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-rw-r--r--synapse/__init__.py2
-rw-r--r--synapse/api/urls.py1
-rw-r--r--synapse/app/homeserver.py12
-rw-r--r--synapse/app/media_repository.py6
-rw-r--r--synapse/app/synchrotron.py18
-rw-r--r--synapse/config/database.py55
-rw-r--r--synapse/config/logger.py26
-rw-r--r--synapse/config/repository.py5
-rw-r--r--synapse/crypto/event_signing.py9
-rw-r--r--synapse/crypto/keyring.py13
-rw-r--r--synapse/handlers/federation.py4
-rw-r--r--synapse/handlers/message.py43
-rw-r--r--synapse/handlers/presence.py9
-rw-r--r--synapse/handlers/room.py20
-rw-r--r--synapse/handlers/room_member.py13
-rw-r--r--synapse/http/site.py18
-rw-r--r--synapse/replication/tcp/client.py3
-rw-r--r--synapse/rest/key/v2/remote_key_resource.py30
-rw-r--r--synapse/rest/media/v0/__init__.py0
-rw-r--r--synapse/rest/media/v0/content_repository.py103
-rw-r--r--synapse/storage/_base.py4
-rw-r--r--synapse/storage/background_updates.py51
-rw-r--r--synapse/storage/data_stores/__init__.py21
-rw-r--r--synapse/storage/data_stores/main/event_federation.py72
-rw-r--r--synapse/storage/data_stores/main/events_worker.py44
-rw-r--r--synapse/storage/data_stores/main/room.py64
-rw-r--r--synapse/storage/data_stores/main/schema/delta/56/remove_tombstoned_rooms_from_directory.sql18
-rw-r--r--synapse/storage/data_stores/main/state.py4
-rw-r--r--synapse/types.py12
29 files changed, 368 insertions, 312 deletions
diff --git a/synapse/__init__.py b/synapse/__init__.py
index 71cb611820..a3bd855045 100644
--- a/synapse/__init__.py
+++ b/synapse/__init__.py
@@ -36,7 +36,7 @@ try:
 except ImportError:
     pass
 
-__version__ = "1.7.3"
+__version__ = "1.8.0rc1"
 
 if bool(os.environ.get("SYNAPSE_TEST_PATCH_LOG_CONTEXTS", False)):
     # We import here so that we don't have to install a bunch of deps when
diff --git a/synapse/api/urls.py b/synapse/api/urls.py
index ff1f39e86c..f34434bd67 100644
--- a/synapse/api/urls.py
+++ b/synapse/api/urls.py
@@ -29,7 +29,6 @@ FEDERATION_V2_PREFIX = FEDERATION_PREFIX + "/v2"
 FEDERATION_UNSTABLE_PREFIX = FEDERATION_PREFIX + "/unstable"
 STATIC_PREFIX = "/_matrix/static"
 WEB_CLIENT_PREFIX = "/_matrix/client"
-CONTENT_REPO_PREFIX = "/_matrix/content"
 SERVER_KEY_V2_PREFIX = "/_matrix/key/v2"
 MEDIA_PREFIX = "/_matrix/media/r0"
 LEGACY_MEDIA_PREFIX = "/_matrix/media/v1"
diff --git a/synapse/app/homeserver.py b/synapse/app/homeserver.py
index 0e9bf7f53a..e5b44a5eed 100644
--- a/synapse/app/homeserver.py
+++ b/synapse/app/homeserver.py
@@ -39,7 +39,6 @@ import synapse
 import synapse.config.logger
 from synapse import events
 from synapse.api.urls import (
-    CONTENT_REPO_PREFIX,
     FEDERATION_PREFIX,
     LEGACY_MEDIA_PREFIX,
     MEDIA_PREFIX,
@@ -65,7 +64,6 @@ from synapse.replication.tcp.resource import ReplicationStreamProtocolFactory
 from synapse.rest import ClientRestResource
 from synapse.rest.admin import AdminRestResource
 from synapse.rest.key.v2 import KeyApiV2Resource
-from synapse.rest.media.v0.content_repository import ContentRepoResource
 from synapse.rest.well_known import WellKnownResource
 from synapse.server import HomeServer
 from synapse.storage import DataStore
@@ -223,13 +221,7 @@ class SynapseHomeServer(HomeServer):
             if self.get_config().enable_media_repo:
                 media_repo = self.get_media_repository_resource()
                 resources.update(
-                    {
-                        MEDIA_PREFIX: media_repo,
-                        LEGACY_MEDIA_PREFIX: media_repo,
-                        CONTENT_REPO_PREFIX: ContentRepoResource(
-                            self, self.config.uploads_path
-                        ),
-                    }
+                    {MEDIA_PREFIX: media_repo, LEGACY_MEDIA_PREFIX: media_repo}
                 )
             elif name == "media":
                 raise ConfigError(
@@ -318,7 +310,7 @@ def setup(config_options):
             "Synapse Homeserver", config_options
         )
     except ConfigError as e:
-        sys.stderr.write("\n" + str(e) + "\n")
+        sys.stderr.write("\nERROR: %s\n" % (e,))
         sys.exit(1)
 
     if not config:
diff --git a/synapse/app/media_repository.py b/synapse/app/media_repository.py
index 4c80f257e2..a63c53dc44 100644
--- a/synapse/app/media_repository.py
+++ b/synapse/app/media_repository.py
@@ -21,7 +21,7 @@ from twisted.web.resource import NoResource
 
 import synapse
 from synapse import events
-from synapse.api.urls import CONTENT_REPO_PREFIX, LEGACY_MEDIA_PREFIX, MEDIA_PREFIX
+from synapse.api.urls import LEGACY_MEDIA_PREFIX, MEDIA_PREFIX
 from synapse.app import _base
 from synapse.config._base import ConfigError
 from synapse.config.homeserver import HomeServerConfig
@@ -37,7 +37,6 @@ from synapse.replication.slave.storage.registration import SlavedRegistrationSto
 from synapse.replication.slave.storage.transactions import SlavedTransactionStore
 from synapse.replication.tcp.client import ReplicationClientHandler
 from synapse.rest.admin import register_servlets_for_media_repo
-from synapse.rest.media.v0.content_repository import ContentRepoResource
 from synapse.server import HomeServer
 from synapse.storage.data_stores.main.media_repository import MediaRepositoryStore
 from synapse.util.httpresourcetree import create_resource_tree
@@ -82,9 +81,6 @@ class MediaRepositoryServer(HomeServer):
                         {
                             MEDIA_PREFIX: media_repo,
                             LEGACY_MEDIA_PREFIX: media_repo,
-                            CONTENT_REPO_PREFIX: ContentRepoResource(
-                                self, self.config.uploads_path
-                            ),
                             "/_synapse/admin": admin_resource,
                         }
                     )
diff --git a/synapse/app/synchrotron.py b/synapse/app/synchrotron.py
index dd2132e608..03031ee34d 100644
--- a/synapse/app/synchrotron.py
+++ b/synapse/app/synchrotron.py
@@ -48,7 +48,7 @@ from synapse.replication.slave.storage.receipts import SlavedReceiptsStore
 from synapse.replication.slave.storage.registration import SlavedRegistrationStore
 from synapse.replication.slave.storage.room import RoomStore
 from synapse.replication.tcp.client import ReplicationClientHandler
-from synapse.replication.tcp.streams.events import EventsStreamEventRow
+from synapse.replication.tcp.streams.events import EventsStreamEventRow, EventsStreamRow
 from synapse.rest.client.v1 import events
 from synapse.rest.client.v1.initial_sync import InitialSyncRestServlet
 from synapse.rest.client.v1.room import RoomInitialSyncRestServlet
@@ -371,8 +371,7 @@ class SyncReplicationHandler(ReplicationClientHandler):
     def get_currently_syncing_users(self):
         return self.presence_handler.get_currently_syncing_users()
 
-    @defer.inlineCallbacks
-    def process_and_notify(self, stream_name, token, rows):
+    async def process_and_notify(self, stream_name, token, rows):
         try:
             if stream_name == "events":
                 # We shouldn't get multiple rows per token for events stream, so
@@ -380,7 +379,14 @@ class SyncReplicationHandler(ReplicationClientHandler):
                 for row in rows:
                     if row.type != EventsStreamEventRow.TypeId:
                         continue
-                    event = yield self.store.get_event(row.data.event_id)
+                    assert isinstance(row, EventsStreamRow)
+
+                    event = await self.store.get_event(
+                        row.data.event_id, allow_rejected=True
+                    )
+                    if event.rejected_reason:
+                        continue
+
                     extra_users = ()
                     if event.type == EventTypes.Member:
                         extra_users = (event.state_key,)
@@ -412,11 +418,11 @@ class SyncReplicationHandler(ReplicationClientHandler):
             elif stream_name == "device_lists":
                 all_room_ids = set()
                 for row in rows:
-                    room_ids = yield self.store.get_rooms_for_user(row.user_id)
+                    room_ids = await self.store.get_rooms_for_user(row.user_id)
                     all_room_ids.update(room_ids)
                 self.notifier.on_new_event("device_list_key", token, rooms=all_room_ids)
             elif stream_name == "presence":
-                yield self.presence_handler.process_replication_rows(token, rows)
+                await self.presence_handler.process_replication_rows(token, rows)
             elif stream_name == "receipts":
                 self.notifier.on_new_event(
                     "groups_key", token, users=[row.user_id for row in rows]
diff --git a/synapse/config/database.py b/synapse/config/database.py
index 134824789c..219b32f670 100644
--- a/synapse/config/database.py
+++ b/synapse/config/database.py
@@ -15,7 +15,6 @@
 import logging
 import os
 from textwrap import indent
-from typing import List
 
 import yaml
 
@@ -30,16 +29,13 @@ class DatabaseConnectionConfig:
     Args:
         name: A label for the database, used for logging.
         db_config: The config for a particular database, as per `database`
-            section of main config. Has two fields: `name` for database
-            module name, and `args` for the args to give to the database
-            connector.
-        data_stores: The list of data stores that should be provisioned on the
-            database. Defaults to all data stores.
+            section of main config. Has three fields: `name` for database
+            module name, `args` for the args to give to the database
+            connector, and optional `data_stores` that is a list of stores to
+            provision on this database (defaulting to all).
     """
 
-    def __init__(
-        self, name: str, db_config: dict, data_stores: List[str] = ["main", "state"]
-    ):
+    def __init__(self, name: str, db_config: dict):
         if db_config["name"] not in ("sqlite3", "psycopg2"):
             raise ConfigError("Unsupported database type %r" % (db_config["name"],))
 
@@ -48,6 +44,10 @@ class DatabaseConnectionConfig:
                 {"cp_min": 1, "cp_max": 1, "check_same_thread": False}
             )
 
+        data_stores = db_config.get("data_stores")
+        if data_stores is None:
+            data_stores = ["main", "state"]
+
         self.name = name
         self.config = db_config
         self.data_stores = data_stores
@@ -59,14 +59,43 @@ class DatabaseConfig(Config):
     def read_config(self, config, **kwargs):
         self.event_cache_size = self.parse_size(config.get("event_cache_size", "10K"))
 
+        # We *experimentally* support specifying multiple databases via the
+        # `databases` key. This is a map from a label to database config in the
+        # same format as the `database` config option, plus an extra
+        # `data_stores` key to specify which data store goes where. For example:
+        #
+        #   databases:
+        #       master:
+        #           name: psycopg2
+        #           data_stores: ["main"]
+        #           args: {}
+        #       state:
+        #           name: psycopg2
+        #           data_stores: ["state"]
+        #           args: {}
+
+        multi_database_config = config.get("databases")
         database_config = config.get("database")
 
-        if database_config is None:
-            database_config = {"name": "sqlite3", "args": {}}
+        if multi_database_config and database_config:
+            raise ConfigError("Can't specify both 'database' and 'datbases' in config")
+
+        if multi_database_config:
+            if config.get("database_path"):
+                raise ConfigError("Can't specify 'database_path' with 'databases'")
+
+            self.databases = [
+                DatabaseConnectionConfig(name, db_conf)
+                for name, db_conf in multi_database_config.items()
+            ]
+
+        else:
+            if database_config is None:
+                database_config = {"name": "sqlite3", "args": {}}
 
-        self.databases = [DatabaseConnectionConfig("master", database_config)]
+            self.databases = [DatabaseConnectionConfig("master", database_config)]
 
-        self.set_databasepath(config.get("database_path"))
+            self.set_databasepath(config.get("database_path"))
 
     def generate_config_section(self, data_dir_path, database_conf, **kwargs):
         if not database_conf:
diff --git a/synapse/config/logger.py b/synapse/config/logger.py
index 75bb904718..a25c70e928 100644
--- a/synapse/config/logger.py
+++ b/synapse/config/logger.py
@@ -12,7 +12,7 @@
 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 # See the License for the specific language governing permissions and
 # limitations under the License.
-
+import argparse
 import logging
 import logging.config
 import os
@@ -37,10 +37,17 @@ from synapse.logging._structured import (
 from synapse.logging.context import LoggingContextFilter
 from synapse.util.versionstring import get_version_string
 
-from ._base import Config
+from ._base import Config, ConfigError
 
 DEFAULT_LOG_CONFIG = Template(
-    """
+    """\
+# Log configuration for Synapse.
+#
+# This is a YAML file containing a standard Python logging configuration
+# dictionary. See [1] for details on the valid settings.
+#
+# [1]: https://docs.python.org/3.7/library/logging.config.html#configuration-dictionary-schema
+
 version: 1
 
 formatters:
@@ -81,11 +88,18 @@ disable_existing_loggers: false
 """
 )
 
+LOG_FILE_ERROR = """\
+Support for the log_file configuration option and --log-file command-line option was
+removed in Synapse 1.3.0. You should instead set up a separate log configuration file.
+"""
+
 
 class LoggingConfig(Config):
     section = "logging"
 
     def read_config(self, config, **kwargs):
+        if config.get("log_file"):
+            raise ConfigError(LOG_FILE_ERROR)
         self.log_config = self.abspath(config.get("log_config"))
         self.no_redirect_stdio = config.get("no_redirect_stdio", False)
 
@@ -106,6 +120,8 @@ class LoggingConfig(Config):
     def read_arguments(self, args):
         if args.no_redirect_stdio is not None:
             self.no_redirect_stdio = args.no_redirect_stdio
+        if args.log_file is not None:
+            raise ConfigError(LOG_FILE_ERROR)
 
     @staticmethod
     def add_arguments(parser):
@@ -118,6 +134,10 @@ class LoggingConfig(Config):
             help="Do not redirect stdout/stderr to the log",
         )
 
+        logging_group.add_argument(
+            "-f", "--log-file", dest="log_file", help=argparse.SUPPRESS,
+        )
+
     def generate_files(self, config, config_dir_path):
         log_config = config.get("log_config")
         if log_config and not os.path.exists(log_config):
diff --git a/synapse/config/repository.py b/synapse/config/repository.py
index d0205e14b9..7d2dd27fd0 100644
--- a/synapse/config/repository.py
+++ b/synapse/config/repository.py
@@ -156,7 +156,6 @@ class ContentRepositoryConfig(Config):
                 (provider_class, parsed_config, wrapper_config)
             )
 
-        self.uploads_path = self.ensure_directory(config.get("uploads_path", "uploads"))
         self.dynamic_thumbnails = config.get("dynamic_thumbnails", False)
         self.thumbnail_requirements = parse_thumbnail_requirements(
             config.get("thumbnail_sizes", DEFAULT_THUMBNAIL_SIZES)
@@ -231,10 +230,6 @@ class ContentRepositoryConfig(Config):
         #    config:
         #       directory: /mnt/some/other/directory
 
-        # Directory where in-progress uploads are stored.
-        #
-        uploads_path: "%(uploads_path)s"
-
         # The largest allowed upload size in bytes
         #
         #max_upload_size: 10M
diff --git a/synapse/crypto/event_signing.py b/synapse/crypto/event_signing.py
index ccaa8a9920..e65bd61d97 100644
--- a/synapse/crypto/event_signing.py
+++ b/synapse/crypto/event_signing.py
@@ -14,7 +14,7 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
-
+import collections.abc
 import hashlib
 import logging
 
@@ -40,8 +40,11 @@ def check_event_content_hash(event, hash_algorithm=hashlib.sha256):
     # some malformed events lack a 'hashes'. Protect against it being missing
     # or a weird type by basically treating it the same as an unhashed event.
     hashes = event.get("hashes")
-    if not isinstance(hashes, dict):
-        raise SynapseError(400, "Malformed 'hashes'", Codes.UNAUTHORIZED)
+    # nb it might be a frozendict or a dict
+    if not isinstance(hashes, collections.abc.Mapping):
+        raise SynapseError(
+            400, "Malformed 'hashes': %s" % (type(hashes),), Codes.UNAUTHORIZED
+        )
 
     if name not in hashes:
         raise SynapseError(
diff --git a/synapse/crypto/keyring.py b/synapse/crypto/keyring.py
index 7cfad192e8..6fe5a6a26a 100644
--- a/synapse/crypto/keyring.py
+++ b/synapse/crypto/keyring.py
@@ -511,17 +511,18 @@ class BaseV2KeyFetcher(object):
         server_name = response_json["server_name"]
         verified = False
         for key_id in response_json["signatures"].get(server_name, {}):
-            # each of the keys used for the signature must be present in the response
-            # json.
             key = verify_keys.get(key_id)
             if not key:
-                raise KeyLookupError(
-                    "Key response is signed by key id %s:%s but that key is not "
-                    "present in the response" % (server_name, key_id)
-                )
+                # the key may not be present in verify_keys if:
+                #  * we got the key from the notary server, and:
+                #  * the key belongs to the notary server, and:
+                #  * the notary server is using a different key to sign notary
+                #    responses.
+                continue
 
             verify_signed_json(response_json, server_name, key.verify_key)
             verified = True
+            break
 
         if not verified:
             raise KeyLookupError(
diff --git a/synapse/handlers/federation.py b/synapse/handlers/federation.py
index 72a0febc2b..61b6713c88 100644
--- a/synapse/handlers/federation.py
+++ b/synapse/handlers/federation.py
@@ -248,13 +248,13 @@ class FederationHandler(BaseHandler):
             prevs = set(pdu.prev_event_ids())
             seen = await self.store.have_seen_events(prevs)
 
-            if min_depth and pdu.depth < min_depth:
+            if min_depth is not None and pdu.depth < min_depth:
                 # This is so that we don't notify the user about this
                 # message, to work around the fact that some events will
                 # reference really really old events we really don't want to
                 # send to the clients.
                 pdu.internal_metadata.outlier = True
-            elif min_depth and pdu.depth > min_depth:
+            elif min_depth is not None and pdu.depth > min_depth:
                 missing_prevs = prevs - seen
                 if sent_to_us_directly and missing_prevs:
                     # If we're missing stuff, ensure we only fetch stuff one
diff --git a/synapse/handlers/message.py b/synapse/handlers/message.py
index 4ad752205f..8ea3aca2f4 100644
--- a/synapse/handlers/message.py
+++ b/synapse/handlers/message.py
@@ -48,7 +48,7 @@ from synapse.metrics.background_process_metrics import run_as_background_process
 from synapse.replication.http.send_event import ReplicationSendEventRestServlet
 from synapse.storage.data_stores.main.events_worker import EventRedactBehaviour
 from synapse.storage.state import StateFilter
-from synapse.types import RoomAlias, UserID, create_requester
+from synapse.types import Collection, RoomAlias, UserID, create_requester
 from synapse.util.async_helpers import Linearizer
 from synapse.util.frozenutils import frozendict_json_encoder
 from synapse.util.metrics import measure_func
@@ -422,7 +422,7 @@ class EventCreationHandler(object):
         event_dict,
         token_id=None,
         txn_id=None,
-        prev_events_and_hashes=None,
+        prev_event_ids: Optional[Collection[str]] = None,
         require_consent=True,
     ):
         """
@@ -439,10 +439,9 @@ class EventCreationHandler(object):
             token_id (str)
             txn_id (str)
 
-            prev_events_and_hashes (list[(str, dict[str, str], int)]|None):
+            prev_event_ids:
                 the forward extremities to use as the prev_events for the
-                new event. For each event, a tuple of (event_id, hashes, depth)
-                where *hashes* is a map from algorithm to hash.
+                new event.
 
                 If None, they will be requested from the database.
 
@@ -498,9 +497,7 @@ class EventCreationHandler(object):
             builder.internal_metadata.txn_id = txn_id
 
         event, context = yield self.create_new_client_event(
-            builder=builder,
-            requester=requester,
-            prev_events_and_hashes=prev_events_and_hashes,
+            builder=builder, requester=requester, prev_event_ids=prev_event_ids,
         )
 
         # In an ideal world we wouldn't need the second part of this condition. However,
@@ -714,7 +711,7 @@ class EventCreationHandler(object):
     @measure_func("create_new_client_event")
     @defer.inlineCallbacks
     def create_new_client_event(
-        self, builder, requester=None, prev_events_and_hashes=None
+        self, builder, requester=None, prev_event_ids: Optional[Collection[str]] = None
     ):
         """Create a new event for a local client
 
@@ -723,10 +720,9 @@ class EventCreationHandler(object):
 
             requester (synapse.types.Requester|None):
 
-            prev_events_and_hashes (list[(str, dict[str, str], int)]|None):
+            prev_event_ids:
                 the forward extremities to use as the prev_events for the
-                new event. For each event, a tuple of (event_id, hashes, depth)
-                where *hashes* is a map from algorithm to hash.
+                new event.
 
                 If None, they will be requested from the database.
 
@@ -734,22 +730,15 @@ class EventCreationHandler(object):
             Deferred[(synapse.events.EventBase, synapse.events.snapshot.EventContext)]
         """
 
-        if prev_events_and_hashes is not None:
-            assert len(prev_events_and_hashes) <= 10, (
+        if prev_event_ids is not None:
+            assert len(prev_event_ids) <= 10, (
                 "Attempting to create an event with %i prev_events"
-                % (len(prev_events_and_hashes),)
+                % (len(prev_event_ids),)
             )
         else:
-            prev_events_and_hashes = yield self.store.get_prev_events_for_room(
-                builder.room_id
-            )
-
-        prev_events = [
-            (event_id, prev_hashes)
-            for event_id, prev_hashes, _ in prev_events_and_hashes
-        ]
+            prev_event_ids = yield self.store.get_prev_events_for_room(builder.room_id)
 
-        event = yield builder.build(prev_event_ids=[p for p, _ in prev_events])
+        event = yield builder.build(prev_event_ids=prev_event_ids)
         context = yield self.state.compute_event_context(event)
         if requester:
             context.app_service = requester.app_service
@@ -1042,9 +1031,7 @@ class EventCreationHandler(object):
             # For each room we need to find a joined member we can use to send
             # the dummy event with.
 
-            prev_events_and_hashes = yield self.store.get_prev_events_for_room(room_id)
-
-            latest_event_ids = (event_id for (event_id, _, _) in prev_events_and_hashes)
+            latest_event_ids = yield self.store.get_prev_events_for_room(room_id)
 
             members = yield self.state.get_current_users_in_room(
                 room_id, latest_event_ids=latest_event_ids
@@ -1063,7 +1050,7 @@ class EventCreationHandler(object):
                             "room_id": room_id,
                             "sender": user_id,
                         },
-                        prev_events_and_hashes=prev_events_and_hashes,
+                        prev_event_ids=latest_event_ids,
                     )
 
                     event.internal_metadata.proactively_send = False
diff --git a/synapse/handlers/presence.py b/synapse/handlers/presence.py
index 240c4add12..202aa9294f 100644
--- a/synapse/handlers/presence.py
+++ b/synapse/handlers/presence.py
@@ -95,12 +95,7 @@ assert LAST_ACTIVE_GRANULARITY < IDLE_TIMER
 
 
 class PresenceHandler(object):
-    def __init__(self, hs):
-        """
-
-        Args:
-            hs (synapse.server.HomeServer):
-        """
+    def __init__(self, hs: "synapse.server.HomeServer"):
         self.hs = hs
         self.is_mine = hs.is_mine
         self.is_mine_id = hs.is_mine_id
@@ -230,7 +225,7 @@ class PresenceHandler(object):
         is some spurious presence changes that will self-correct.
         """
         # If the DB pool has already terminated, don't try updating
-        if not self.store.database.is_running():
+        if not self.store.db.is_running():
             return
 
         logger.info(
diff --git a/synapse/handlers/room.py b/synapse/handlers/room.py
index 89c9118b26..9cab2adbfb 100644
--- a/synapse/handlers/room.py
+++ b/synapse/handlers/room.py
@@ -16,6 +16,7 @@
 # limitations under the License.
 
 """Contains functions for performing events on rooms."""
+
 import itertools
 import logging
 import math
@@ -271,7 +272,7 @@ class RoomCreationHandler(BaseHandler):
             except AuthError as e:
                 logger.warning("Unable to update PLs in old room: %s", e)
 
-        logger.info("Setting correct PLs in new room")
+        logger.info("Setting correct PLs in new room to %s", old_room_pl_state.content)
         yield self.event_creation_handler.create_and_send_nonmember_event(
             requester,
             {
@@ -365,13 +366,18 @@ class RoomCreationHandler(BaseHandler):
         needed_power_level = max(state_default, ban, max(event_power_levels.values()))
 
         # Raise the requester's power level in the new room if necessary
-        current_power_level = power_levels["users"][requester.user.to_string()]
+        current_power_level = power_levels["users"][user_id]
         if current_power_level < needed_power_level:
-            # Assign this power level to the requester
-            power_levels["users"][requester.user.to_string()] = needed_power_level
+            # make sure we copy the event content rather than overwriting it.
+            # note that if frozen_dicts are enabled, `power_levels` will be a frozen
+            # dict so we can't just copy.deepcopy it.
 
-        # Set the power levels to the modified state
-        initial_state[(EventTypes.PowerLevels, "")] = power_levels
+            new_power_levels = {k: v for k, v in power_levels.items() if k != "users"}
+            new_power_levels["users"] = {
+                k: v for k, v in power_levels.get("users", {}).items() if k != user_id
+            }
+            new_power_levels["users"][user_id] = needed_power_level
+            initial_state[(EventTypes.PowerLevels, "")] = new_power_levels
 
         yield self._send_events_for_new_room(
             requester,
@@ -733,7 +739,7 @@ class RoomCreationHandler(BaseHandler):
         initial_state,
         creation_content,
         room_alias=None,
-        power_level_content_override=None,
+        power_level_content_override=None,  # Doesn't apply when initial state has power level state event content
         creator_join_profile=None,
     ):
         def create(etype, content, **kwargs):
diff --git a/synapse/handlers/room_member.py b/synapse/handlers/room_member.py
index 44c5e3239c..03bb52ccfb 100644
--- a/synapse/handlers/room_member.py
+++ b/synapse/handlers/room_member.py
@@ -25,7 +25,7 @@ from twisted.internet import defer
 from synapse import types
 from synapse.api.constants import EventTypes, Membership
 from synapse.api.errors import AuthError, Codes, SynapseError
-from synapse.types import RoomID, UserID
+from synapse.types import Collection, RoomID, UserID
 from synapse.util.async_helpers import Linearizer
 from synapse.util.distributor import user_joined_room, user_left_room
 
@@ -149,7 +149,7 @@ class RoomMemberHandler(object):
         target,
         room_id,
         membership,
-        prev_events_and_hashes,
+        prev_event_ids: Collection[str],
         txn_id=None,
         ratelimit=True,
         content=None,
@@ -177,7 +177,7 @@ class RoomMemberHandler(object):
             },
             token_id=requester.access_token_id,
             txn_id=txn_id,
-            prev_events_and_hashes=prev_events_and_hashes,
+            prev_event_ids=prev_event_ids,
             require_consent=require_consent,
         )
 
@@ -370,8 +370,7 @@ class RoomMemberHandler(object):
             if block_invite:
                 raise SynapseError(403, "Invites have been disabled on this server")
 
-        prev_events_and_hashes = yield self.store.get_prev_events_for_room(room_id)
-        latest_event_ids = (event_id for (event_id, _, _) in prev_events_and_hashes)
+        latest_event_ids = yield self.store.get_prev_events_for_room(room_id)
 
         current_state_ids = yield self.state_handler.get_current_state_ids(
             room_id, latest_event_ids=latest_event_ids
@@ -485,7 +484,7 @@ class RoomMemberHandler(object):
             membership=effective_membership_state,
             txn_id=txn_id,
             ratelimit=ratelimit,
-            prev_events_and_hashes=prev_events_and_hashes,
+            prev_event_ids=latest_event_ids,
             content=content,
             require_consent=require_consent,
         )
@@ -507,6 +506,8 @@ class RoomMemberHandler(object):
         Returns:
             Deferred
         """
+        logger.info("Transferring room state from %s to %s", old_room_id, room_id)
+
         # Find all local users that were in the old room and copy over each user's state
         users = yield self.store.get_users_in_room(old_room_id)
         yield self.copy_user_state_on_room_upgrade(old_room_id, room_id, users)
diff --git a/synapse/http/site.py b/synapse/http/site.py
index ff8184a3d0..9f2d035fa0 100644
--- a/synapse/http/site.py
+++ b/synapse/http/site.py
@@ -47,9 +47,9 @@ class SynapseRequest(Request):
         logcontext(LoggingContext) : the log context for this request
     """
 
-    def __init__(self, site, channel, *args, **kw):
+    def __init__(self, channel, *args, **kw):
         Request.__init__(self, channel, *args, **kw)
-        self.site = site
+        self.site = channel.site
         self._channel = channel  # this is used by the tests
         self.authenticated_entity = None
         self.start_time = 0
@@ -331,18 +331,6 @@ class XForwardedForRequest(SynapseRequest):
         )
 
 
-class SynapseRequestFactory(object):
-    def __init__(self, site, x_forwarded_for):
-        self.site = site
-        self.x_forwarded_for = x_forwarded_for
-
-    def __call__(self, *args, **kwargs):
-        if self.x_forwarded_for:
-            return XForwardedForRequest(self.site, *args, **kwargs)
-        else:
-            return SynapseRequest(self.site, *args, **kwargs)
-
-
 class SynapseSite(Site):
     """
     Subclass of a twisted http Site that does access logging with python's
@@ -364,7 +352,7 @@ class SynapseSite(Site):
         self.site_tag = site_tag
 
         proxied = config.get("x_forwarded", False)
-        self.requestFactory = SynapseRequestFactory(self, proxied)
+        self.requestFactory = XForwardedForRequest if proxied else SynapseRequest
         self.access_logger = logging.getLogger(logger_name)
         self.server_version_string = server_version_string.encode("ascii")
 
diff --git a/synapse/replication/tcp/client.py b/synapse/replication/tcp/client.py
index fead78388c..bbcb84646c 100644
--- a/synapse/replication/tcp/client.py
+++ b/synapse/replication/tcp/client.py
@@ -46,7 +46,8 @@ class ReplicationClientFactory(ReconnectingClientFactory):
     is required.
     """
 
-    maxDelay = 30  # Try at least once every N seconds
+    initialDelay = 0.1
+    maxDelay = 1  # Try at least once every N seconds
 
     def __init__(self, hs, client_name, handler: AbstractReplicationClientHandler):
         self.client_name = client_name
diff --git a/synapse/rest/key/v2/remote_key_resource.py b/synapse/rest/key/v2/remote_key_resource.py
index e7fc3f0431..bf5e0eb844 100644
--- a/synapse/rest/key/v2/remote_key_resource.py
+++ b/synapse/rest/key/v2/remote_key_resource.py
@@ -15,6 +15,7 @@
 import logging
 
 from canonicaljson import encode_canonical_json, json
+from signedjson.key import encode_verify_key_base64
 from signedjson.sign import sign_json
 
 from twisted.internet import defer
@@ -216,15 +217,28 @@ class RemoteKey(DirectServeResource):
         if cache_misses and query_remote_on_cache_miss:
             yield self.fetcher.get_keys(cache_misses)
             yield self.query_keys(request, query, query_remote_on_cache_miss=False)
-        else:
-            signed_keys = []
-            for key_json in json_results:
-                key_json = json.loads(key_json)
+            return
+
+        signed_keys = []
+        for key_json in json_results:
+            key_json = json.loads(key_json)
+
+            # backwards-compatibility hack for #6596: if the requested key belongs
+            # to us, make sure that all of the signing keys appear in the
+            # "verify_keys" section.
+            if key_json["server_name"] == self.config.server_name:
+                verify_keys = key_json["verify_keys"]
                 for signing_key in self.config.key_server_signing_keys:
-                    key_json = sign_json(key_json, self.config.server_name, signing_key)
+                    key_id = "%s:%s" % (signing_key.alg, signing_key.version)
+                    verify_keys[key_id] = {
+                        "key": encode_verify_key_base64(signing_key.verify_key)
+                    }
+
+            for signing_key in self.config.key_server_signing_keys:
+                key_json = sign_json(key_json, self.config.server_name, signing_key)
 
-                signed_keys.append(key_json)
+            signed_keys.append(key_json)
 
-            results = {"server_keys": signed_keys}
+        results = {"server_keys": signed_keys}
 
-            respond_with_json_bytes(request, 200, encode_canonical_json(results))
+        respond_with_json_bytes(request, 200, encode_canonical_json(results))
diff --git a/synapse/rest/media/v0/__init__.py b/synapse/rest/media/v0/__init__.py
deleted file mode 100644
index e69de29bb2..0000000000
--- a/synapse/rest/media/v0/__init__.py
+++ /dev/null
diff --git a/synapse/rest/media/v0/content_repository.py b/synapse/rest/media/v0/content_repository.py
deleted file mode 100644
index 86884c0ef4..0000000000
--- a/synapse/rest/media/v0/content_repository.py
+++ /dev/null
@@ -1,103 +0,0 @@
-# -*- coding: utf-8 -*-
-# Copyright 2014-2016 OpenMarket Ltd
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-
-import base64
-import logging
-import os
-import re
-
-from canonicaljson import json
-
-from twisted.protocols.basic import FileSender
-from twisted.web import resource, server
-
-from synapse.api.errors import Codes, cs_error
-from synapse.http.server import finish_request, respond_with_json_bytes
-
-logger = logging.getLogger(__name__)
-
-
-class ContentRepoResource(resource.Resource):
-    """Provides file uploading and downloading.
-
-    Uploads are POSTed to wherever this Resource is linked to. This resource
-    returns a "content token" which can be used to GET this content again. The
-    token is typically a path, but it may not be. Tokens can expire, be
-    one-time uses, etc.
-
-    In this case, the token is a path to the file and contains 3 interesting
-    sections:
-        - User ID base64d (for namespacing content to each user)
-        - random 24 char string
-        - Content type base64d (so we can return it when clients GET it)
-
-    """
-
-    isLeaf = True
-
-    def __init__(self, hs, directory):
-        resource.Resource.__init__(self)
-        self.hs = hs
-        self.directory = directory
-
-    def render_GET(self, request):
-        # no auth here on purpose, to allow anyone to view, even across home
-        # servers.
-
-        # TODO: A little crude here, we could do this better.
-        filename = request.path.decode("ascii").split("/")[-1]
-        # be paranoid
-        filename = re.sub("[^0-9A-z.-_]", "", filename)
-
-        file_path = self.directory + "/" + filename
-
-        logger.debug("Searching for %s", file_path)
-
-        if os.path.isfile(file_path):
-            # filename has the content type
-            base64_contentype = filename.split(".")[1]
-            content_type = base64.urlsafe_b64decode(base64_contentype)
-            logger.info("Sending file %s", file_path)
-            f = open(file_path, "rb")
-            request.setHeader("Content-Type", content_type)
-
-            # cache for at least a day.
-            # XXX: we might want to turn this off for data we don't want to
-            # recommend caching as it's sensitive or private - or at least
-            # select private. don't bother setting Expires as all our matrix
-            # clients are smart enough to be happy with Cache-Control (right?)
-            request.setHeader(b"Cache-Control", b"public,max-age=86400,s-maxage=86400")
-
-            d = FileSender().beginFileTransfer(f, request)
-
-            # after the file has been sent, clean up and finish the request
-            def cbFinished(ignored):
-                f.close()
-                finish_request(request)
-
-            d.addCallback(cbFinished)
-        else:
-            respond_with_json_bytes(
-                request,
-                404,
-                json.dumps(cs_error("Not found", code=Codes.NOT_FOUND)),
-                send_cors=True,
-            )
-
-        return server.NOT_DONE_YET
-
-    def render_OPTIONS(self, request):
-        respond_with_json_bytes(request, 200, {}, send_cors=True)
-        return server.NOT_DONE_YET
diff --git a/synapse/storage/_base.py b/synapse/storage/_base.py
index 88546ad614..3bb9381663 100644
--- a/synapse/storage/_base.py
+++ b/synapse/storage/_base.py
@@ -16,6 +16,7 @@
 # limitations under the License.
 import logging
 import random
+from abc import ABCMeta
 
 from six import PY2
 from six.moves import builtins
@@ -30,7 +31,8 @@ from synapse.types import get_domain_from_id
 logger = logging.getLogger(__name__)
 
 
-class SQLBaseStore(object):
+# some of our subclasses have abstract methods, so we use the ABCMeta metaclass.
+class SQLBaseStore(metaclass=ABCMeta):
     """Base class for data stores that holds helper functions.
 
     Note that multiple instances of this class will exist as there will be one
diff --git a/synapse/storage/background_updates.py b/synapse/storage/background_updates.py
index 4f97fd5ab6..bd547f35cf 100644
--- a/synapse/storage/background_updates.py
+++ b/synapse/storage/background_updates.py
@@ -14,6 +14,7 @@
 # limitations under the License.
 
 import logging
+from typing import Optional
 
 from canonicaljson import json
 
@@ -97,15 +98,14 @@ class BackgroundUpdater(object):
     def start_doing_background_updates(self):
         run_as_background_process("background_updates", self.run_background_updates)
 
-    @defer.inlineCallbacks
-    def run_background_updates(self, sleep=True):
+    async def run_background_updates(self, sleep=True):
         logger.info("Starting background schema updates")
         while True:
             if sleep:
-                yield self._clock.sleep(self.BACKGROUND_UPDATE_INTERVAL_MS / 1000.0)
+                await self._clock.sleep(self.BACKGROUND_UPDATE_INTERVAL_MS / 1000.0)
 
             try:
-                result = yield self.do_next_background_update(
+                result = await self.do_next_background_update(
                     self.BACKGROUND_UPDATE_DURATION_MS
                 )
             except Exception:
@@ -170,20 +170,21 @@ class BackgroundUpdater(object):
 
         return not update_exists
 
-    @defer.inlineCallbacks
-    def do_next_background_update(self, desired_duration_ms):
+    async def do_next_background_update(
+        self, desired_duration_ms: float
+    ) -> Optional[int]:
         """Does some amount of work on the next queued background update
 
+        Returns once some amount of work is done.
+
         Args:
             desired_duration_ms(float): How long we want to spend
                 updating.
         Returns:
-            A deferred that completes once some amount of work is done.
-            The deferred will have a value of None if there is currently
-            no more work to do.
+            None if there is no more work to do, otherwise an int
         """
         if not self._background_update_queue:
-            updates = yield self.db.simple_select_list(
+            updates = await self.db.simple_select_list(
                 "background_updates",
                 keyvalues=None,
                 retcols=("update_name", "depends_on"),
@@ -201,11 +202,12 @@ class BackgroundUpdater(object):
         update_name = self._background_update_queue.pop(0)
         self._background_update_queue.append(update_name)
 
-        res = yield self._do_background_update(update_name, desired_duration_ms)
+        res = await self._do_background_update(update_name, desired_duration_ms)
         return res
 
-    @defer.inlineCallbacks
-    def _do_background_update(self, update_name, desired_duration_ms):
+    async def _do_background_update(
+        self, update_name: str, desired_duration_ms: float
+    ) -> int:
         logger.info("Starting update batch on background update '%s'", update_name)
 
         update_handler = self._background_update_handlers[update_name]
@@ -225,7 +227,7 @@ class BackgroundUpdater(object):
         else:
             batch_size = self.DEFAULT_BACKGROUND_BATCH_SIZE
 
-        progress_json = yield self.db.simple_select_one_onecol(
+        progress_json = await self.db.simple_select_one_onecol(
             "background_updates",
             keyvalues={"update_name": update_name},
             retcol="progress_json",
@@ -234,7 +236,7 @@ class BackgroundUpdater(object):
         progress = json.loads(progress_json)
 
         time_start = self._clock.time_msec()
-        items_updated = yield update_handler(progress, batch_size)
+        items_updated = await update_handler(progress, batch_size)
         time_stop = self._clock.time_msec()
 
         duration_ms = time_stop - time_start
@@ -263,7 +265,9 @@ class BackgroundUpdater(object):
         * A dict of the current progress
         * An integer count of the number of items to update in this batch.
 
-        The handler should return a deferred integer count of items updated.
+        The handler should return a deferred or coroutine which returns an integer count
+        of items updated.
+
         The handler is responsible for updating the progress of the update.
 
         Args:
@@ -432,6 +436,21 @@ class BackgroundUpdater(object):
             "background_updates", keyvalues={"update_name": update_name}
         )
 
+    def _background_update_progress(self, update_name: str, progress: dict):
+        """Update the progress of a background update
+
+        Args:
+            update_name: The name of the background update task
+            progress: The progress of the update.
+        """
+
+        return self.db.runInteraction(
+            "background_update_progress",
+            self._background_update_progress_txn,
+            update_name,
+            progress,
+        )
+
     def _background_update_progress_txn(self, txn, update_name, progress):
         """Update the progress of a background update
 
diff --git a/synapse/storage/data_stores/__init__.py b/synapse/storage/data_stores/__init__.py
index d20df5f076..092e803799 100644
--- a/synapse/storage/data_stores/__init__.py
+++ b/synapse/storage/data_stores/__init__.py
@@ -37,6 +37,8 @@ class DataStores(object):
         # store.
 
         self.databases = []
+        self.main = None
+        self.state = None
 
         for database_config in hs.config.database.databases:
             db_name = database_config.name
@@ -54,10 +56,22 @@ class DataStores(object):
 
                 if "main" in database_config.data_stores:
                     logger.info("Starting 'main' data store")
+
+                    # Sanity check we don't try and configure the main store on
+                    # multiple databases.
+                    if self.main:
+                        raise Exception("'main' data store already configured")
+
                     self.main = main_store_class(database, db_conn, hs)
 
                 if "state" in database_config.data_stores:
                     logger.info("Starting 'state' data store")
+
+                    # Sanity check we don't try and configure the state store on
+                    # multiple databases.
+                    if self.state:
+                        raise Exception("'state' data store already configured")
+
                     self.state = StateGroupDataStore(database, db_conn, hs)
 
                 db_conn.commit()
@@ -65,3 +79,10 @@ class DataStores(object):
                 self.databases.append(database)
 
                 logger.info("Database %r prepared", db_name)
+
+        # Sanity check that we have actually configured all the required stores.
+        if not self.main:
+            raise Exception("No 'main' data store configured")
+
+        if not self.state:
+            raise Exception("No 'main' data store configured")
diff --git a/synapse/storage/data_stores/main/event_federation.py b/synapse/storage/data_stores/main/event_federation.py
index 1f517e8fad..60c67457b4 100644
--- a/synapse/storage/data_stores/main/event_federation.py
+++ b/synapse/storage/data_stores/main/event_federation.py
@@ -14,13 +14,10 @@
 # limitations under the License.
 import itertools
 import logging
-import random
 
 from six.moves import range
 from six.moves.queue import Empty, PriorityQueue
 
-from unpaddedbase64 import encode_base64
-
 from twisted.internet import defer
 
 from synapse.api.errors import StoreError
@@ -148,8 +145,7 @@ class EventFederationWorkerStore(EventsWorkerStore, SignatureWorkerStore, SQLBas
             retcol="event_id",
         )
 
-    @defer.inlineCallbacks
-    def get_prev_events_for_room(self, room_id):
+    def get_prev_events_for_room(self, room_id: str):
         """
         Gets a subset of the current forward extremities in the given room.
 
@@ -160,40 +156,29 @@ class EventFederationWorkerStore(EventsWorkerStore, SignatureWorkerStore, SQLBas
             room_id (str): room_id
 
         Returns:
-            Deferred[list[(str, dict[str, str], int)]]
-                for each event, a tuple of (event_id, hashes, depth)
-                where *hashes* is a map from algorithm to hash.
+            Deferred[List[str]]: the event ids of the forward extremites
+
         """
-        res = yield self.get_latest_event_ids_and_hashes_in_room(room_id)
-        if len(res) > 10:
-            # Sort by reverse depth, so we point to the most recent.
-            res.sort(key=lambda a: -a[2])
 
-            # we use half of the limit for the actual most recent events, and
-            # the other half to randomly point to some of the older events, to
-            # make sure that we don't completely ignore the older events.
-            res = res[0:5] + random.sample(res[5:], 5)
+        return self.db.runInteraction(
+            "get_prev_events_for_room", self._get_prev_events_for_room_txn, room_id
+        )
 
-        return res
+    def _get_prev_events_for_room_txn(self, txn, room_id: str):
+        # we just use the 10 newest events. Older events will become
+        # prev_events of future events.
 
-    def get_latest_event_ids_and_hashes_in_room(self, room_id):
+        sql = """
+            SELECT e.event_id FROM event_forward_extremities AS f
+            INNER JOIN events AS e USING (event_id)
+            WHERE f.room_id = ?
+            ORDER BY e.depth DESC
+            LIMIT 10
         """
-        Gets the current forward extremities in the given room
 
-        Args:
-            room_id (str): room_id
+        txn.execute(sql, (room_id,))
 
-        Returns:
-            Deferred[list[(str, dict[str, str], int)]]
-                for each event, a tuple of (event_id, hashes, depth)
-                where *hashes* is a map from algorithm to hash.
-        """
-
-        return self.db.runInteraction(
-            "get_latest_event_ids_and_hashes_in_room",
-            self._get_latest_event_ids_and_hashes_in_room,
-            room_id,
-        )
+        return [row[0] for row in txn]
 
     def get_rooms_with_many_extremities(self, min_count, limit, room_id_filter):
         """Get the top rooms with at least N extremities.
@@ -243,27 +228,6 @@ class EventFederationWorkerStore(EventsWorkerStore, SignatureWorkerStore, SQLBas
             desc="get_latest_event_ids_in_room",
         )
 
-    def _get_latest_event_ids_and_hashes_in_room(self, txn, room_id):
-        sql = (
-            "SELECT e.event_id, e.depth FROM events as e "
-            "INNER JOIN event_forward_extremities as f "
-            "ON e.event_id = f.event_id "
-            "AND e.room_id = f.room_id "
-            "WHERE f.room_id = ?"
-        )
-
-        txn.execute(sql, (room_id,))
-
-        results = []
-        for event_id, depth in txn.fetchall():
-            hashes = self._get_event_reference_hashes_txn(txn, event_id)
-            prev_hashes = {
-                k: encode_base64(v) for k, v in hashes.items() if k == "sha256"
-            }
-            results.append((event_id, prev_hashes, depth))
-
-        return results
-
     def get_min_depth(self, room_id):
         """ For hte given room, get the minimum depth we have seen for it.
         """
@@ -506,7 +470,7 @@ class EventFederationStore(EventFederationWorkerStore):
     def _update_min_depth_for_room_txn(self, txn, room_id, depth):
         min_depth = self._get_min_depth_interaction(txn, room_id)
 
-        if min_depth and depth >= min_depth:
+        if min_depth is not None and depth >= min_depth:
             return
 
         self.db.simple_upsert_txn(
diff --git a/synapse/storage/data_stores/main/events_worker.py b/synapse/storage/data_stores/main/events_worker.py
index 2c9142814c..0cce5232f5 100644
--- a/synapse/storage/data_stores/main/events_worker.py
+++ b/synapse/storage/data_stores/main/events_worker.py
@@ -137,7 +137,7 @@ class EventsWorkerStore(SQLBaseStore):
     @defer.inlineCallbacks
     def get_event(
         self,
-        event_id: List[str],
+        event_id: str,
         redact_behaviour: EventRedactBehaviour = EventRedactBehaviour.REDACT,
         get_prev_content: bool = False,
         allow_rejected: bool = False,
@@ -148,15 +148,22 @@ class EventsWorkerStore(SQLBaseStore):
 
         Args:
             event_id: The event_id of the event to fetch
+
             redact_behaviour: Determine what to do with a redacted event. Possible values:
                 * AS_IS - Return the full event body with no redacted content
                 * REDACT - Return the event but with a redacted body
-                * DISALLOW - Do not return redacted events
+                * DISALLOW - Do not return redacted events (behave as per allow_none
+                    if the event is redacted)
+
             get_prev_content: If True and event is a state event,
                 include the previous states content in the unsigned field.
-            allow_rejected: If True return rejected events.
+
+            allow_rejected: If True, return rejected events. Otherwise,
+                behave as per allow_none.
+
             allow_none: If True, return None if no event found, if
                 False throw a NotFoundError
+
             check_room_id: if not None, check the room of the found event.
                 If there is a mismatch, behave as per allow_none.
 
@@ -196,14 +203,18 @@ class EventsWorkerStore(SQLBaseStore):
 
         Args:
             event_ids: The event_ids of the events to fetch
+
             redact_behaviour: Determine what to do with a redacted event. Possible
                 values:
                 * AS_IS - Return the full event body with no redacted content
                 * REDACT - Return the event but with a redacted body
-                * DISALLOW - Do not return redacted events
+                * DISALLOW - Do not return redacted events (omit them from the response)
+
             get_prev_content: If True and event is a state event,
                 include the previous states content in the unsigned field.
-            allow_rejected: If True return rejected events.
+
+            allow_rejected: If True, return rejected events. Otherwise,
+                omits rejeted events from the response.
 
         Returns:
             Deferred : Dict from event_id to event.
@@ -228,15 +239,21 @@ class EventsWorkerStore(SQLBaseStore):
         """Get events from the database and return in a list in the same order
         as given by `event_ids` arg.
 
+        Unknown events will be omitted from the response.
+
         Args:
             event_ids: The event_ids of the events to fetch
+
             redact_behaviour: Determine what to do with a redacted event. Possible values:
                 * AS_IS - Return the full event body with no redacted content
                 * REDACT - Return the event but with a redacted body
-                * DISALLOW - Do not return redacted events
+                * DISALLOW - Do not return redacted events (omit them from the response)
+
             get_prev_content: If True and event is a state event,
                 include the previous states content in the unsigned field.
-            allow_rejected: If True, return rejected events.
+
+            allow_rejected: If True, return rejected events. Otherwise,
+                omits rejected events from the response.
 
         Returns:
             Deferred[list[EventBase]]: List of events fetched from the database. The
@@ -369,9 +386,14 @@ class EventsWorkerStore(SQLBaseStore):
 
         If events are pulled from the database, they will be cached for future lookups.
 
+        Unknown events are omitted from the response.
+
         Args:
+
             event_ids (Iterable[str]): The event_ids of the events to fetch
-            allow_rejected (bool): Whether to include rejected events
+
+            allow_rejected (bool): Whether to include rejected events. If False,
+                rejected events are omitted from the response.
 
         Returns:
             Deferred[Dict[str, _EventCacheEntry]]:
@@ -506,9 +528,13 @@ class EventsWorkerStore(SQLBaseStore):
 
         Returned events will be added to the cache for future lookups.
 
+        Unknown events are omitted from the response.
+
         Args:
             event_ids (Iterable[str]): The event_ids of the events to fetch
-            allow_rejected (bool): Whether to include rejected events
+
+            allow_rejected (bool): Whether to include rejected events. If False,
+                rejected events are omitted from the response.
 
         Returns:
             Deferred[Dict[str, _EventCacheEntry]]:
diff --git a/synapse/storage/data_stores/main/room.py b/synapse/storage/data_stores/main/room.py
index aa476d0fbf..79cfd39194 100644
--- a/synapse/storage/data_stores/main/room.py
+++ b/synapse/storage/data_stores/main/room.py
@@ -17,6 +17,7 @@
 import collections
 import logging
 import re
+from abc import abstractmethod
 from typing import Optional, Tuple
 
 from six import integer_types
@@ -367,6 +368,8 @@ class RoomWorkerStore(SQLBaseStore):
 
 
 class RoomBackgroundUpdateStore(SQLBaseStore):
+    REMOVE_TOMESTONED_ROOMS_BG_UPDATE = "remove_tombstoned_rooms_from_directory"
+
     def __init__(self, database: Database, db_conn, hs):
         super(RoomBackgroundUpdateStore, self).__init__(database, db_conn, hs)
 
@@ -376,6 +379,11 @@ class RoomBackgroundUpdateStore(SQLBaseStore):
             "insert_room_retention", self._background_insert_retention,
         )
 
+        self.db.updates.register_background_update_handler(
+            self.REMOVE_TOMESTONED_ROOMS_BG_UPDATE,
+            self._remove_tombstoned_rooms_from_directory,
+        )
+
     @defer.inlineCallbacks
     def _background_insert_retention(self, progress, batch_size):
         """Retrieves a list of all rooms within a range and inserts an entry for each of
@@ -444,6 +452,62 @@ class RoomBackgroundUpdateStore(SQLBaseStore):
 
         defer.returnValue(batch_size)
 
+    async def _remove_tombstoned_rooms_from_directory(
+        self, progress, batch_size
+    ) -> int:
+        """Removes any rooms with tombstone events from the room directory
+
+        Nowadays this is handled by the room upgrade handler, but we may have some
+        that got left behind
+        """
+
+        last_room = progress.get("room_id", "")
+
+        def _get_rooms(txn):
+            txn.execute(
+                """
+                SELECT room_id
+                FROM rooms r
+                INNER JOIN current_state_events cse USING (room_id)
+                WHERE room_id > ? AND r.is_public
+                AND cse.type = '%s' AND cse.state_key = ''
+                ORDER BY room_id ASC
+                LIMIT ?;
+                """
+                % EventTypes.Tombstone,
+                (last_room, batch_size),
+            )
+
+            return [row[0] for row in txn]
+
+        rooms = await self.db.runInteraction(
+            "get_tombstoned_directory_rooms", _get_rooms
+        )
+
+        if not rooms:
+            await self.db.updates._end_background_update(
+                self.REMOVE_TOMESTONED_ROOMS_BG_UPDATE
+            )
+            return 0
+
+        for room_id in rooms:
+            logger.info("Removing tombstoned room %s from the directory", room_id)
+            await self.set_room_is_public(room_id, False)
+
+        await self.db.updates._background_update_progress(
+            self.REMOVE_TOMESTONED_ROOMS_BG_UPDATE, {"room_id": rooms[-1]}
+        )
+
+        return len(rooms)
+
+    @abstractmethod
+    def set_room_is_public(self, room_id, is_public):
+        # this will need to be implemented if a background update is performed with
+        # existing (tombstoned, public) rooms in the database.
+        #
+        # It's overridden by RoomStore for the synapse master.
+        raise NotImplementedError()
+
 
 class RoomStore(RoomBackgroundUpdateStore, RoomWorkerStore, SearchStore):
     def __init__(self, database: Database, db_conn, hs):
diff --git a/synapse/storage/data_stores/main/schema/delta/56/remove_tombstoned_rooms_from_directory.sql b/synapse/storage/data_stores/main/schema/delta/56/remove_tombstoned_rooms_from_directory.sql
new file mode 100644
index 0000000000..aeb17813d3
--- /dev/null
+++ b/synapse/storage/data_stores/main/schema/delta/56/remove_tombstoned_rooms_from_directory.sql
@@ -0,0 +1,18 @@
+/* Copyright 2020 The Matrix.org Foundation C.I.C.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+-- Now that #6232 is a thing, we can remove old rooms from the directory.
+INSERT INTO background_updates (update_name, progress_json) VALUES
+  ('remove_tombstoned_rooms_from_directory', '{}');
diff --git a/synapse/storage/data_stores/main/state.py b/synapse/storage/data_stores/main/state.py
index 0dc39f139c..d07440e3ed 100644
--- a/synapse/storage/data_stores/main/state.py
+++ b/synapse/storage/data_stores/main/state.py
@@ -12,7 +12,7 @@
 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 # See the License for the specific language governing permissions and
 # limitations under the License.
-
+import collections.abc
 import logging
 from collections import namedtuple
 from typing import Iterable, Tuple
@@ -107,7 +107,7 @@ class StateGroupWorkerStore(EventsWorkerStore, SQLBaseStore):
         predecessor = create_event.content.get("predecessor", None)
 
         # Ensure the key is a dictionary
-        if not isinstance(predecessor, dict):
+        if not isinstance(predecessor, collections.abc.Mapping):
             return None
 
         return predecessor
diff --git a/synapse/types.py b/synapse/types.py
index aafc3ffe74..cd996c0b5a 100644
--- a/synapse/types.py
+++ b/synapse/types.py
@@ -15,6 +15,7 @@
 # limitations under the License.
 import re
 import string
+import sys
 from collections import namedtuple
 
 import attr
@@ -23,6 +24,17 @@ from unpaddedbase64 import decode_base64
 
 from synapse.api.errors import SynapseError
 
+# define a version of typing.Collection that works on python 3.5
+if sys.version_info[:3] >= (3, 6, 0):
+    from typing import Collection
+else:
+    from typing import Sized, Iterable, Container, TypeVar
+
+    T_co = TypeVar("T_co", covariant=True)
+
+    class Collection(Iterable[T_co], Container[T_co], Sized):
+        __slots__ = ()
+
 
 class Requester(
     namedtuple(