Merge pull request #5278 from matrix-org/erikj/cleanup_bad_extremities

 Add DB bg update to cleanup extremities.

1 files changed, 401 insertions, 0 deletions

diff --git a/synapse/storage/events_bg_updates.py b/synapse/storage/events_bg_updates.py
new file mode 100644
index 0000000000..75c1935bf3
--- /dev/null
+++ b/synapse/storage/events_bg_updates.py
@@ -0,0 +1,401 @@
+# -*- coding: utf-8 -*-
+# Copyright 2019 The Matrix.org Foundation C.I.C.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+import logging
+
+from six import text_type
+
+from canonicaljson import json
+
+from twisted.internet import defer
+
+from synapse.storage.background_updates import BackgroundUpdateStore
+
+logger = logging.getLogger(__name__)
+
+
+class EventsBackgroundUpdatesStore(BackgroundUpdateStore):
+
+    EVENT_ORIGIN_SERVER_TS_NAME = "event_origin_server_ts"
+    EVENT_FIELDS_SENDER_URL_UPDATE_NAME = "event_fields_sender_url"
+    DELETE_SOFT_FAILED_EXTREMITIES = "delete_soft_failed_extremities"
+
+    def __init__(self, db_conn, hs):
+        super(EventsBackgroundUpdatesStore, self).__init__(db_conn, hs)
+
+        self.register_background_update_handler(
+            self.EVENT_ORIGIN_SERVER_TS_NAME, self._background_reindex_origin_server_ts
+        )
+        self.register_background_update_handler(
+            self.EVENT_FIELDS_SENDER_URL_UPDATE_NAME,
+            self._background_reindex_fields_sender,
+        )
+
+        self.register_background_index_update(
+            "event_contains_url_index",
+            index_name="event_contains_url_index",
+            table="events",
+            columns=["room_id", "topological_ordering", "stream_ordering"],
+            where_clause="contains_url = true AND outlier = false",
+        )
+
+        # an event_id index on event_search is useful for the purge_history
+        # api. Plus it means we get to enforce some integrity with a UNIQUE
+        # clause
+        self.register_background_index_update(
+            "event_search_event_id_idx",
+            index_name="event_search_event_id_idx",
+            table="event_search",
+            columns=["event_id"],
+            unique=True,
+            psql_only=True,
+        )
+
+        self.register_background_update_handler(
+            self.DELETE_SOFT_FAILED_EXTREMITIES,
+            self._cleanup_extremities_bg_update,
+        )
+
+    @defer.inlineCallbacks
+    def _background_reindex_fields_sender(self, progress, batch_size):
+        target_min_stream_id = progress["target_min_stream_id_inclusive"]
+        max_stream_id = progress["max_stream_id_exclusive"]
+        rows_inserted = progress.get("rows_inserted", 0)
+
+        INSERT_CLUMP_SIZE = 1000
+
+        def reindex_txn(txn):
+            sql = (
+                "SELECT stream_ordering, event_id, json FROM events"
+                " INNER JOIN event_json USING (event_id)"
+                " WHERE ? <= stream_ordering AND stream_ordering < ?"
+                " ORDER BY stream_ordering DESC"
+                " LIMIT ?"
+            )
+
+            txn.execute(sql, (target_min_stream_id, max_stream_id, batch_size))
+
+            rows = txn.fetchall()
+            if not rows:
+                return 0
+
+            min_stream_id = rows[-1][0]
+
+            update_rows = []
+            for row in rows:
+                try:
+                    event_id = row[1]
+                    event_json = json.loads(row[2])
+                    sender = event_json["sender"]
+                    content = event_json["content"]
+
+                    contains_url = "url" in content
+                    if contains_url:
+                        contains_url &= isinstance(content["url"], text_type)
+                except (KeyError, AttributeError):
+                    # If the event is missing a necessary field then
+                    # skip over it.
+                    continue
+
+                update_rows.append((sender, contains_url, event_id))
+
+            sql = "UPDATE events SET sender = ?, contains_url = ? WHERE event_id = ?"
+
+            for index in range(0, len(update_rows), INSERT_CLUMP_SIZE):
+                clump = update_rows[index : index + INSERT_CLUMP_SIZE]
+                txn.executemany(sql, clump)
+
+            progress = {
+                "target_min_stream_id_inclusive": target_min_stream_id,
+                "max_stream_id_exclusive": min_stream_id,
+                "rows_inserted": rows_inserted + len(rows),
+            }
+
+            self._background_update_progress_txn(
+                txn, self.EVENT_FIELDS_SENDER_URL_UPDATE_NAME, progress
+            )
+
+            return len(rows)
+
+        result = yield self.runInteraction(
+            self.EVENT_FIELDS_SENDER_URL_UPDATE_NAME, reindex_txn
+        )
+
+        if not result:
+            yield self._end_background_update(self.EVENT_FIELDS_SENDER_URL_UPDATE_NAME)
+
+        defer.returnValue(result)
+
+    @defer.inlineCallbacks
+    def _background_reindex_origin_server_ts(self, progress, batch_size):
+        target_min_stream_id = progress["target_min_stream_id_inclusive"]
+        max_stream_id = progress["max_stream_id_exclusive"]
+        rows_inserted = progress.get("rows_inserted", 0)
+
+        INSERT_CLUMP_SIZE = 1000
+
+        def reindex_search_txn(txn):
+            sql = (
+                "SELECT stream_ordering, event_id FROM events"
+                " WHERE ? <= stream_ordering AND stream_ordering < ?"
+                " ORDER BY stream_ordering DESC"
+                " LIMIT ?"
+            )
+
+            txn.execute(sql, (target_min_stream_id, max_stream_id, batch_size))
+
+            rows = txn.fetchall()
+            if not rows:
+                return 0
+
+            min_stream_id = rows[-1][0]
+            event_ids = [row[1] for row in rows]
+
+            rows_to_update = []
+
+            chunks = [event_ids[i : i + 100] for i in range(0, len(event_ids), 100)]
+            for chunk in chunks:
+                ev_rows = self._simple_select_many_txn(
+                    txn,
+                    table="event_json",
+                    column="event_id",
+                    iterable=chunk,
+                    retcols=["event_id", "json"],
+                    keyvalues={},
+                )
+
+                for row in ev_rows:
+                    event_id = row["event_id"]
+                    event_json = json.loads(row["json"])
+                    try:
+                        origin_server_ts = event_json["origin_server_ts"]
+                    except (KeyError, AttributeError):
+                        # If the event is missing a necessary field then
+                        # skip over it.
+                        continue
+
+                    rows_to_update.append((origin_server_ts, event_id))
+
+            sql = "UPDATE events SET origin_server_ts = ? WHERE event_id = ?"
+
+            for index in range(0, len(rows_to_update), INSERT_CLUMP_SIZE):
+                clump = rows_to_update[index : index + INSERT_CLUMP_SIZE]
+                txn.executemany(sql, clump)
+
+            progress = {
+                "target_min_stream_id_inclusive": target_min_stream_id,
+                "max_stream_id_exclusive": min_stream_id,
+                "rows_inserted": rows_inserted + len(rows_to_update),
+            }
+
+            self._background_update_progress_txn(
+                txn, self.EVENT_ORIGIN_SERVER_TS_NAME, progress
+            )
+
+            return len(rows_to_update)
+
+        result = yield self.runInteraction(
+            self.EVENT_ORIGIN_SERVER_TS_NAME, reindex_search_txn
+        )
+
+        if not result:
+            yield self._end_background_update(self.EVENT_ORIGIN_SERVER_TS_NAME)
+
+        defer.returnValue(result)
+
+    @defer.inlineCallbacks
+    def _cleanup_extremities_bg_update(self, progress, batch_size):
+        """Background update to clean out extremities that should have been
+        deleted previously.
+
+        Mainly used to deal with the aftermath of #5269.
+        """
+
+        # This works by first copying all existing forward extremities into the
+        # `_extremities_to_check` table at start up, and then checking each
+        # event in that table whether we have any descendants that are not
+        # soft-failed/rejected. If that is the case then we delete that event
+        # from the forward extremities table.
+        #
+        # For efficiency, we do this in batches by recursively pulling out all
+        # descendants of a batch until we find the non soft-failed/rejected
+        # events, i.e. the set of descendants whose chain of prev events back
+        # to the batch of extremities are all soft-failed or rejected.
+        # Typically, we won't find any such events as extremities will rarely
+        # have any descendants, but if they do then we should delete those
+        # extremities.
+
+        def _cleanup_extremities_bg_update_txn(txn):
+            # The set of extremity event IDs that we're checking this round
+            original_set = set()
+
+            # A dict[str, set[str]] of event ID to their prev events.
+            graph = {}
+
+            # The set of descendants of the original set that are not rejected
+            # nor soft-failed. Ancestors of these events should be removed
+            # from the forward extremities table.
+            non_rejected_leaves = set()
+
+            # Set of event IDs that have been soft failed, and for which we
+            # should check if they have descendants which haven't been soft
+            # failed.
+            soft_failed_events_to_lookup = set()
+
+            # First, we get `batch_size` events from the table, pulling out
+            # their successor events, if any, and the successor events'
+            # rejection status.
+            txn.execute(
+                """SELECT prev_event_id, event_id, internal_metadata,
+                    rejections.event_id IS NOT NULL, events.outlier
+                FROM (
+                    SELECT event_id AS prev_event_id
+                    FROM _extremities_to_check
+                    LIMIT ?
+                ) AS f
+                LEFT JOIN event_edges USING (prev_event_id)
+                LEFT JOIN events USING (event_id)
+                LEFT JOIN event_json USING (event_id)
+                LEFT JOIN rejections USING (event_id)
+                """, (batch_size,)
+            )
+
+            for prev_event_id, event_id, metadata, rejected, outlier in txn:
+                original_set.add(prev_event_id)
+
+                if not event_id or outlier:
+                    # Common case where the forward extremity doesn't have any
+                    # descendants.
+                    continue
+
+                graph.setdefault(event_id, set()).add(prev_event_id)
+
+                soft_failed = False
+                if metadata:
+                    soft_failed = json.loads(metadata).get("soft_failed")
+
+                if soft_failed or rejected:
+                    soft_failed_events_to_lookup.add(event_id)
+                else:
+                    non_rejected_leaves.add(event_id)
+
+            # Now we recursively check all the soft-failed descendants we
+            # found above in the same way, until we have nothing left to
+            # check.
+            while soft_failed_events_to_lookup:
+                # We only want to do 100 at a time, so we split given list
+                # into two.
+                batch = list(soft_failed_events_to_lookup)
+                to_check, to_defer = batch[:100], batch[100:]
+                soft_failed_events_to_lookup = set(to_defer)
+
+                sql = """SELECT prev_event_id, event_id, internal_metadata,
+                    rejections.event_id IS NOT NULL
+                    FROM event_edges
+                    INNER JOIN events USING (event_id)
+                    INNER JOIN event_json USING (event_id)
+                    LEFT JOIN rejections USING (event_id)
+                    WHERE
+                        prev_event_id IN (%s)
+                        AND NOT events.outlier
+                """ % (
+                    ",".join("?" for _ in to_check),
+                )
+                txn.execute(sql, to_check)
+
+                for prev_event_id, event_id, metadata, rejected in txn:
+                    if event_id in graph:
+                        # Already handled this event previously, but we still
+                        # want to record the edge.
+                        graph[event_id].add(prev_event_id)
+                        continue
+
+                    graph[event_id] = {prev_event_id}
+
+                    soft_failed = json.loads(metadata).get("soft_failed")
+                    if soft_failed or rejected:
+                        soft_failed_events_to_lookup.add(event_id)
+                    else:
+                        non_rejected_leaves.add(event_id)
+
+            # We have a set of non-soft-failed descendants, so we recurse up
+            # the graph to find all ancestors and add them to the set of event
+            # IDs that we can delete from forward extremities table.
+            to_delete = set()
+            while non_rejected_leaves:
+                event_id = non_rejected_leaves.pop()
+                prev_event_ids = graph.get(event_id, set())
+                non_rejected_leaves.update(prev_event_ids)
+                to_delete.update(prev_event_ids)
+
+            to_delete.intersection_update(original_set)
+
+            deleted = self._simple_delete_many_txn(
+                txn=txn,
+                table="event_forward_extremities",
+                column="event_id",
+                iterable=to_delete,
+                keyvalues={},
+            )
+
+            logger.info(
+                "Deleted %d forward extremities of %d checked, to clean up #5269",
+                deleted,
+                len(original_set),
+            )
+
+            if deleted:
+                # We now need to invalidate the caches of these rooms
+                rows = self._simple_select_many_txn(
+                    txn,
+                    table="events",
+                    column="event_id",
+                    iterable=to_delete,
+                    keyvalues={},
+                    retcols=("room_id",)
+                )
+                room_ids = set(row["room_id"] for row in rows)
+                for room_id in room_ids:
+                    txn.call_after(
+                        self.get_latest_event_ids_in_room.invalidate,
+                        (room_id,)
+                    )
+
+            self._simple_delete_many_txn(
+                txn=txn,
+                table="_extremities_to_check",
+                column="event_id",
+                iterable=original_set,
+                keyvalues={},
+            )
+
+            return len(original_set)
+
+        num_handled = yield self.runInteraction(
+            "_cleanup_extremities_bg_update", _cleanup_extremities_bg_update_txn,
+        )
+
+        if not num_handled:
+            yield self._end_background_update(self.DELETE_SOFT_FAILED_EXTREMITIES)
+
+            def _drop_table_txn(txn):
+                txn.execute("DROP TABLE _extremities_to_check")
+
+            yield self.runInteraction(
+                "_cleanup_extremities_bg_update_drop_table",
+                _drop_table_txn,
+            )
+
+        defer.returnValue(num_handled)