Merge remote-tracking branch 'origin/release-v1.70' into matrix-org-hotfixes

author: Erik Johnston <erik@matrix.org> 2022-10-18 10:55:09 +0100
committer: Erik Johnston <erik@matrix.org> 2022-10-18 10:55:09 +0100
commit: 1235316645b3167495cd936601d474e6f9c4e5a7 (patch)
tree: 500957b38e5ae9b28570734afbc7ad72908e3efa
parent: Merge remote-tracking branch 'origin/release-v1.69' into matrix-org-hotfixes (diff)
parent: Allow poetry-core 1.3.2 (#14217) (diff)
download: synapse-1235316645b3167495cd936601d474e6f9c4e5a7.tar.xz
207 files changed, 4152 insertions, 1683 deletions
diff --git a/.ci/scripts/setup_complement_prerequisites.sh b/.ci/scripts/setup_complement_prerequisites.sh
index 4848901cbf..42ef654167 100755
--- a/.ci/scripts/setup_complement_prerequisites.sh
+++ b/.ci/scripts/setup_complement_prerequisites.sh
@@ -21,7 +21,7 @@ endblock
 
 block Install Complement Dependencies
   sudo apt-get -qq update && sudo apt-get install -qqy libolm3 libolm-dev
-  go get -v github.com/haveyoudebuggedit/gotestfmt/v2/cmd/gotestfmt@latest
+  go get -v github.com/gotesttools/gotestfmt/v2/cmd/gotestfmt@latest
 endblock
 
 block Install custom gotestfmt template
diff --git a/.github/dependabot.yml b/.github/dependabot.yml
index 9c7db1fc86..9ee62bf539 100644
--- a/.github/dependabot.yml
+++ b/.github/dependabot.yml
@@ -15,3 +15,8 @@ updates:
     directory: "/"
     schedule:
       interval: "weekly"
+
+  - package-ecosystem: "cargo"
+    directory: "/"
+    schedule:
+      interval: "weekly"
diff --git a/.github/workflows/latest_deps.yml b/.github/workflows/latest_deps.yml
index e240bf4e4f..b1e45ee648 100644
--- a/.github/workflows/latest_deps.yml
+++ b/.github/workflows/latest_deps.yml
@@ -76,7 +76,7 @@ jobs:
             -e POSTGRES_PASSWORD=postgres \
             -e POSTGRES_INITDB_ARGS="--lc-collate C --lc-ctype C --encoding UTF8" \
             postgres:${{ matrix.postgres-version }}
-      - uses: actions/setup-python@v2
+      - uses: actions/setup-python@v4
         with:
           python-version: "3.x"
       - run: pip install .[all,test]
diff --git a/.github/workflows/release-artifacts.yml b/.github/workflows/release-artifacts.yml
index eb12d88fbc..1c004fbc11 100644
--- a/.github/workflows/release-artifacts.yml
+++ b/.github/workflows/release-artifacts.yml
@@ -26,7 +26,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v3
-      - uses: actions/setup-python@v2
+      - uses: actions/setup-python@v4
       - id: set-distros
         run: |
           # if we're running from a tag, get the full list of distros; otherwise just use debian:sid
@@ -69,7 +69,7 @@ jobs:
             ${{ runner.os }}-buildx-
 
       - name: Set up python
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v4
 
       - name: Build the packages
         # see https://github.com/docker/build-push-action/issues/252
@@ -107,7 +107,11 @@ jobs:
     steps:
       - uses: actions/checkout@v3
 
-      - uses: actions/setup-python@v3
+      - uses: actions/setup-python@v4
+        with:
+          # setup-python@v4 doesn't impose a default python version. Need to use 3.x
+          # here, because `python` on osx points to Python 2.7.
+          python-version: "3.x"
 
       - name: Install cibuildwheel
         run: python -m pip install cibuildwheel==2.9.0 poetry==1.2.0
diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml
index 94eb58b59d..1115dcc5f3 100644
--- a/.github/workflows/tests.yml
+++ b/.github/workflows/tests.yml
@@ -32,7 +32,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v3
-      - uses: actions/setup-python@v2
+      - uses: actions/setup-python@v4
       - uses: matrix-org/setup-python-poetry@v1
         with:
           extras: "all"
@@ -43,7 +43,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v3
-      - uses: actions/setup-python@v2
+      - uses: actions/setup-python@v4
       - run: "pip install 'click==8.1.1' 'GitPython>=3.1.20'"
       - run: scripts-dev/check_schema_delta.py --force-colors
 
@@ -67,7 +67,7 @@ jobs:
         with:
           ref: ${{ github.event.pull_request.head.sha }}
           fetch-depth: 0
-      - uses: actions/setup-python@v2
+      - uses: actions/setup-python@v4
       - run: "pip install 'towncrier>=18.6.0rc1'"
       - run: scripts-dev/check-newsfragment.sh
         env:
@@ -142,7 +142,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v3
-      - uses: actions/setup-python@v2
+      - uses: actions/setup-python@v4
       - id: get-matrix
         run: .ci/scripts/calculate_jobs.py
     outputs:
diff --git a/CHANGES.md b/CHANGES.md
index e280ddcdb5..87afa6f109 100644
--- a/CHANGES.md
+++ b/CHANGES.md
@@ -1,11 +1,32 @@
-Synapse 1.69.0rc3 (2022-10-12)
-==============================
+Synapse 1.69.0 (2022-10-17)
+===========================
 
 Please note that legacy Prometheus metric names are now deprecated and will be removed in Synapse 1.73.0.
 Server administrators should update their dashboards and alerting rules to avoid using the deprecated metric names.
 See the [upgrade notes](https://matrix-org.github.io/synapse/v1.69/upgrade.html#upgrading-to-v1690) for more details.
 
 
+No significant changes since 1.69.0rc4.
+
+
+Synapse 1.69.0rc4 (2022-10-14)
+==============================
+
+Bugfixes
+--------
+
+- Fix poor performance of the `event_push_backfill_thread_id` background update, which was introduced in Synapse 1.68.0rc1. ([\#14172](https://github.com/matrix-org/synapse/issues/14172), [\#14181](https://github.com/matrix-org/synapse/issues/14181))
+
+
+Updates to the Docker image
+---------------------------
+
+- Fix docker build OOMing in CI for arm64 builds. ([\#14173](https://github.com/matrix-org/synapse/issues/14173))
+
+
+Synapse 1.69.0rc3 (2022-10-12)
+==============================
+
 Bugfixes
 --------
 
diff --git a/Cargo.lock b/Cargo.lock
index b952b6b4c0..b3090ad726 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -104,9 +104,9 @@ checksum = "adab1eaa3408fb7f0c777a73e7465fd5656136fc93b670eb6df3c88c2c1344e3"
 
 [[package]]
 name = "itoa"
-version = "1.0.3"
+version = "1.0.4"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "6c8af84674fe1f223a982c933a0ee1086ac4d4052aa0fb8060c12c6ad838e754"
+checksum = "4217ad341ebadf8d8e724e264f13e593e0648f5b3e94b3896a5df283be015ecc"
 
 [[package]]
 name = "lazy_static"
@@ -116,15 +116,15 @@ checksum = "e2abad23fbc42b3700f2f279844dc832adb2b2eb069b2df918f455c4e18cc646"
 
 [[package]]
 name = "libc"
-version = "0.2.132"
+version = "0.2.135"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "8371e4e5341c3a96db127eb2465ac681ced4c433e01dd0e938adbef26ba93ba5"
+checksum = "68783febc7782c6c5cb401fbda4de5a9898be1762314da0bb2c10ced61f18b0c"
 
 [[package]]
 name = "lock_api"
-version = "0.4.7"
+version = "0.4.9"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "327fa5b6a6940e4699ec49a9beae1ea4845c6bab9314e4f84ac68742139d8c53"
+checksum = "435011366fe56583b16cf956f9df0095b405b82d76425bc8981c0e22e60ec4df"
 dependencies = [
  "autocfg",
  "scopeguard",
@@ -156,9 +156,9 @@ dependencies = [
 
 [[package]]
 name = "once_cell"
-version = "1.13.1"
+version = "1.15.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "074864da206b4973b84eb91683020dbefd6a8c3f0f38e054d93954e891935e4e"
+checksum = "e82dad04139b71a90c080c8463fe0dc7902db5192d939bd0950f074d014339e1"
 
 [[package]]
 name = "parking_lot"
@@ -185,18 +185,18 @@ dependencies = [
 
 [[package]]
 name = "proc-macro2"
-version = "1.0.43"
+version = "1.0.46"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "0a2ca2c61bc9f3d74d2886294ab7b9853abd9c1ad903a3ac7815c58989bb7bab"
+checksum = "94e2ef8dbfc347b10c094890f778ee2e36ca9bb4262e86dc99cd217e35f3470b"
 dependencies = [
  "unicode-ident",
 ]
 
 [[package]]
 name = "pyo3"
-version = "0.17.1"
+version = "0.17.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "12f72538a0230791398a0986a6518ebd88abc3fded89007b506ed072acc831e1"
+checksum = "201b6887e5576bf2f945fe65172c1fcbf3fcf285b23e4d71eb171d9736e38d32"
 dependencies = [
  "anyhow",
  "cfg-if",
@@ -212,9 +212,9 @@ dependencies = [
 
 [[package]]
 name = "pyo3-build-config"
-version = "0.17.1"
+version = "0.17.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "fc4cf18c20f4f09995f3554e6bcf9b09bd5e4d6b67c562fdfaafa644526ba479"
+checksum = "bf0708c9ed01692635cbf056e286008e5a2927ab1a5e48cdd3aeb1ba5a6fef47"
 dependencies = [
  "once_cell",
  "target-lexicon",
@@ -222,9 +222,9 @@ dependencies = [
 
 [[package]]
 name = "pyo3-ffi"
-version = "0.17.1"
+version = "0.17.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "a41877f28d8ebd600b6aa21a17b40c3b0fc4dfe73a27b6e81ab3d895e401b0e9"
+checksum = "90352dea4f486932b72ddf776264d293f85b79a1d214de1d023927b41461132d"
 dependencies = [
  "libc",
  "pyo3-build-config",
@@ -243,9 +243,9 @@ dependencies = [
 
 [[package]]
 name = "pyo3-macros"
-version = "0.17.1"
+version = "0.17.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2e81c8d4bcc2f216dc1b665412df35e46d12ee8d3d046b381aad05f1fcf30547"
+checksum = "7eb24b804a2d9e88bfcc480a5a6dd76f006c1e3edaf064e8250423336e2cd79d"
 dependencies = [
  "proc-macro2",
  "pyo3-macros-backend",
@@ -255,9 +255,9 @@ dependencies = [
 
 [[package]]
 name = "pyo3-macros-backend"
-version = "0.17.1"
+version = "0.17.2"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "85752a767ee19399a78272cc2ab625cd7d373b2e112b4b13db28de71fa892784"
+checksum = "f22bb49f6a7348c253d7ac67a6875f2dc65f36c2ae64a82c381d528972bea6d6"
 dependencies = [
  "proc-macro2",
  "quote",
@@ -343,9 +343,9 @@ dependencies = [
 
 [[package]]
 name = "serde_json"
-version = "1.0.85"
+version = "1.0.86"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "e55a28e3aaef9d5ce0506d0a14dbba8054ddc7e499ef522dd8b26859ec9d4a44"
+checksum = "41feea4228a6f1cd09ec7a3593a682276702cd67b5273544757dae23c096f074"
 dependencies = [
  "itoa",
  "ryu",
@@ -354,9 +354,9 @@ dependencies = [
 
 [[package]]
 name = "smallvec"
-version = "1.9.0"
+version = "1.10.0"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "2fd0db749597d91ff862fd1d55ea87f7855a744a8425a64695b6fca237d1dad1"
+checksum = "a507befe795404456341dfab10cef66ead4c041f62b8b11bbb92bffe5d0953e0"
 
 [[package]]
 name = "subtle"
@@ -366,9 +366,9 @@ checksum = "6bdef32e8150c2a081110b42772ffe7d7c9032b606bc226c8260fd97e0976601"
 
 [[package]]
 name = "syn"
-version = "1.0.99"
+version = "1.0.102"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "58dbef6ec655055e20b86b15a8cc6d439cca19b667537ac6a1369572d151ab13"
+checksum = "3fcd952facd492f9be3ef0d0b7032a6e442ee9b361d4acc2b1d0c4aaa5f613a1"
 dependencies = [
  "proc-macro2",
  "quote",
@@ -406,9 +406,9 @@ checksum = "dcf81ac59edc17cc8697ff311e8f5ef2d99fcbd9817b34cec66f90b6c3dfd987"
 
 [[package]]
 name = "unicode-ident"
-version = "1.0.3"
+version = "1.0.5"
 source = "registry+https://github.com/rust-lang/crates.io-index"
-checksum = "c4f5b37a154999a8f3f98cc23a628d850e154479cd94decf3414696e12e31aaf"
+checksum = "6ceab39d59e4c9499d4e5a8ee0e2735b891bb7308ac83dfb4e80cad195c9f6f3"
 
 [[package]]
 name = "unindent"
diff --git a/changelog.d/13394.feature b/changelog.d/13394.feature
new file mode 100644
index 0000000000..df3ce45a76
--- /dev/null
+++ b/changelog.d/13394.feature
@@ -0,0 +1 @@
+Support for [MSC3856](https://github.com/matrix-org/matrix-spec-proposals/pull/3856): threads list API.
diff --git a/changelog.d/13776.feature b/changelog.d/13776.feature
new file mode 100644
index 0000000000..5d0ae16e13
--- /dev/null
+++ b/changelog.d/13776.feature
@@ -0,0 +1 @@
+Support for thread-specific notifications & receipts ([MSC3771](https://github.com/matrix-org/matrix-spec-proposals/pull/3771) and [MSC3773](https://github.com/matrix-org/matrix-spec-proposals/pull/3773)).
diff --git a/changelog.d/13813.bugfix b/changelog.d/13813.bugfix
new file mode 100644
index 0000000000..23388788ff
--- /dev/null
+++ b/changelog.d/13813.bugfix
@@ -0,0 +1 @@
+Fix a long-standing bug where redactions were not being sent over federation if we did not have the original event.
diff --git a/changelog.d/13816.feature b/changelog.d/13816.feature
new file mode 100644
index 0000000000..5eaa936b08
--- /dev/null
+++ b/changelog.d/13816.feature
@@ -0,0 +1 @@
+Stop fetching missing `prev_events` after we already know their signature is invalid.
diff --git a/changelog.d/13824.feature b/changelog.d/13824.feature
new file mode 100644
index 0000000000..5d0ae16e13
--- /dev/null
+++ b/changelog.d/13824.feature
@@ -0,0 +1 @@
+Support for thread-specific notifications & receipts ([MSC3771](https://github.com/matrix-org/matrix-spec-proposals/pull/3771) and [MSC3773](https://github.com/matrix-org/matrix-spec-proposals/pull/3773)).
diff --git a/changelog.d/13877.feature b/changelog.d/13877.feature
new file mode 100644
index 0000000000..5d0ae16e13
--- /dev/null
+++ b/changelog.d/13877.feature
@@ -0,0 +1 @@
+Support for thread-specific notifications & receipts ([MSC3771](https://github.com/matrix-org/matrix-spec-proposals/pull/3771) and [MSC3773](https://github.com/matrix-org/matrix-spec-proposals/pull/3773)).
diff --git a/changelog.d/13878.feature b/changelog.d/13878.feature
new file mode 100644
index 0000000000..5d0ae16e13
--- /dev/null
+++ b/changelog.d/13878.feature
@@ -0,0 +1 @@
+Support for thread-specific notifications & receipts ([MSC3771](https://github.com/matrix-org/matrix-spec-proposals/pull/3771) and [MSC3773](https://github.com/matrix-org/matrix-spec-proposals/pull/3773)).
diff --git a/changelog.d/13955.docker b/changelog.d/13955.docker
new file mode 100644
index 0000000000..043b5690a3
--- /dev/null
+++ b/changelog.d/13955.docker
@@ -0,0 +1 @@
+Update the version of frozendict in Docker images and Debian packages from 2.3.3 to 2.3.4, which may fix memory leak problems.
diff --git a/changelog.d/13983.misc b/changelog.d/13983.misc
new file mode 100644
index 0000000000..69ed75be90
--- /dev/null
+++ b/changelog.d/13983.misc
@@ -0,0 +1 @@
+Bump actions/setup-python from 2 to 4.
diff --git a/changelog.d/13984.misc b/changelog.d/13984.misc
new file mode 100644
index 0000000000..120d042fad
--- /dev/null
+++ b/changelog.d/13984.misc
@@ -0,0 +1 @@
+Bump types-pyopenssl from 22.0.0 to 22.0.10.
diff --git a/changelog.d/13985.misc b/changelog.d/13985.misc
new file mode 100644
index 0000000000..48e8960720
--- /dev/null
+++ b/changelog.d/13985.misc
@@ -0,0 +1 @@
+Bump jsonschema from 4.4.0 to 4.16.0.
diff --git a/changelog.d/13986.misc b/changelog.d/13986.misc
new file mode 100644
index 0000000000..f71aed474b
--- /dev/null
+++ b/changelog.d/13986.misc
@@ -0,0 +1 @@
+Bump types-setuptools from 57.4.9 to 65.4.0.0.
diff --git a/changelog.d/13987.misc b/changelog.d/13987.misc
new file mode 100644
index 0000000000..b1164201be
--- /dev/null
+++ b/changelog.d/13987.misc
@@ -0,0 +1 @@
+Bump types-requests from 2.27.11 to 2.28.11.
diff --git a/changelog.d/13988.misc b/changelog.d/13988.misc
new file mode 100644
index 0000000000..e8c6b4e9b1
--- /dev/null
+++ b/changelog.d/13988.misc
@@ -0,0 +1 @@
+Bump isort from 5.7.0 to 5.10.1.
diff --git a/changelog.d/13991.misc b/changelog.d/13991.misc
new file mode 100644
index 0000000000..f425fb17b2
--- /dev/null
+++ b/changelog.d/13991.misc
@@ -0,0 +1 @@
+Optimise queries used to get a users rooms during sync. Contributed by Nick @ Beeper (@fizzadar).
diff --git a/changelog.d/13996.feature b/changelog.d/13996.feature
new file mode 100644
index 0000000000..771f1c97a3
--- /dev/null
+++ b/changelog.d/13996.feature
@@ -0,0 +1 @@
+Send application service access tokens as a header (and query parameter). Implement [MSC2832](https://github.com/matrix-org/matrix-spec-proposals/pull/2832).
diff --git a/changelog.d/13997.feature b/changelog.d/13997.feature
new file mode 100644
index 0000000000..23f7ed106f
--- /dev/null
+++ b/changelog.d/13997.feature
@@ -0,0 +1 @@
+Ignore server ACL changes when generating pushes. Implement [MSC3786](https://github.com/matrix-org/matrix-spec-proposals/pull/3786).
diff --git a/changelog.d/14006.misc b/changelog.d/14006.misc
new file mode 100644
index 0000000000..c06dcadf02
--- /dev/null
+++ b/changelog.d/14006.misc
@@ -0,0 +1 @@
+Update authlib from 0.15.5 to 1.1.0.
diff --git a/changelog.d/14007.misc b/changelog.d/14007.misc
new file mode 100644
index 0000000000..3f0f3afe1c
--- /dev/null
+++ b/changelog.d/14007.misc
@@ -0,0 +1 @@
+Make `parse_server_name` consistent in handling invalid server names.
\ No newline at end of file
diff --git a/changelog.d/14028.feature b/changelog.d/14028.feature
new file mode 100644
index 0000000000..6f5663a0ef
--- /dev/null
+++ b/changelog.d/14028.feature
@@ -0,0 +1 @@
+The `/relations` endpoint can now be used on workers.
diff --git a/changelog.d/14032.feature b/changelog.d/14032.feature
new file mode 100644
index 0000000000..016c704227
--- /dev/null
+++ b/changelog.d/14032.feature
@@ -0,0 +1 @@
+Advertise support for Matrix 1.3 and 1.4 on `/_matrix/client/versions`.
diff --git a/changelog.d/14033.misc b/changelog.d/14033.misc
new file mode 100644
index 0000000000..fe42852aa5
--- /dev/null
+++ b/changelog.d/14033.misc
@@ -0,0 +1 @@
+Don't repeatedly wake up the same users for batched events.
\ No newline at end of file
diff --git a/changelog.d/14034.bugfix b/changelog.d/14034.bugfix
new file mode 100644
index 0000000000..e437ef3a01
--- /dev/null
+++ b/changelog.d/14034.bugfix
@@ -0,0 +1 @@
+Fix a long-standing bug where edits of non-`m.room.message` events would not be correctly bundled or have their new content applied.
diff --git a/changelog.d/14040.misc b/changelog.d/14040.misc
new file mode 100644
index 0000000000..1a4d3146b5
--- /dev/null
+++ b/changelog.d/14040.misc
@@ -0,0 +1 @@
+Bump msgpack from 1.0.3 to 1.0.4.
diff --git a/changelog.d/14041.misc b/changelog.d/14041.misc
new file mode 100644
index 0000000000..a2119627f8
--- /dev/null
+++ b/changelog.d/14041.misc
@@ -0,0 +1 @@
+Bump types-pyyaml from 6.0.4 to 6.0.12.
diff --git a/changelog.d/14043.misc b/changelog.d/14043.misc
new file mode 100644
index 0000000000..102dc5c773
--- /dev/null
+++ b/changelog.d/14043.misc
@@ -0,0 +1 @@
+Bump phonenumbers from 8.12.44 to 8.12.56.
diff --git a/changelog.d/14044.misc b/changelog.d/14044.misc
new file mode 100644
index 0000000000..0909739a25
--- /dev/null
+++ b/changelog.d/14044.misc
@@ -0,0 +1 @@
+Bump pydantic from 1.9.1 to 1.10.2.
diff --git a/changelog.d/14046.misc b/changelog.d/14046.misc
new file mode 100644
index 0000000000..69ed75be90
--- /dev/null
+++ b/changelog.d/14046.misc
@@ -0,0 +1 @@
+Bump actions/setup-python from 2 to 4.
diff --git a/changelog.d/14050.feature b/changelog.d/14050.feature
new file mode 100644
index 0000000000..5d0ae16e13
--- /dev/null
+++ b/changelog.d/14050.feature
@@ -0,0 +1 @@
+Support for thread-specific notifications & receipts ([MSC3771](https://github.com/matrix-org/matrix-spec-proposals/pull/3771) and [MSC3773](https://github.com/matrix-org/matrix-spec-proposals/pull/3773)).
diff --git a/changelog.d/14053.bugfix b/changelog.d/14053.bugfix
new file mode 100644
index 0000000000..07769f51d0
--- /dev/null
+++ b/changelog.d/14053.bugfix
@@ -0,0 +1 @@
+Fix a bug introduced in Synapse 1.53.0 when querying `/publicRooms` with both a `room_type` filter and a `third_party_instance_id`.
diff --git a/changelog.d/14054.feature b/changelog.d/14054.feature
new file mode 100644
index 0000000000..9cf3f7a557
--- /dev/null
+++ b/changelog.d/14054.feature
@@ -0,0 +1 @@
+Improve validation of request bodies for the [Device Management](https://spec.matrix.org/v1.4/client-server-api/#device-management) and [MSC2697 Device Dehyrdation](https://github.com/matrix-org/matrix-spec-proposals/pull/2697) client-server API endpoints.
diff --git a/changelog.d/14063.misc b/changelog.d/14063.misc
new file mode 100644
index 0000000000..f0d1e47f1a
--- /dev/null
+++ b/changelog.d/14063.misc
@@ -0,0 +1 @@
+Complement test image: capture logs from nginx.
diff --git a/changelog.d/14065.misc b/changelog.d/14065.misc
new file mode 100644
index 0000000000..98998b0015
--- /dev/null
+++ b/changelog.d/14065.misc
@@ -0,0 +1 @@
+Fix a bug introduced in Synapse 1.35.0 where errors parsing a `/send_join` or `/state` response would produce excessive, low-quality Sentry events.
diff --git a/changelog.d/14072.misc b/changelog.d/14072.misc
new file mode 100644
index 0000000000..3070c756d5
--- /dev/null
+++ b/changelog.d/14072.misc
@@ -0,0 +1 @@
+Don't create noisy Sentry events when a requester drops connection to the metrics server mid-request.
diff --git a/changelog.d/14077.doc b/changelog.d/14077.doc
new file mode 100644
index 0000000000..7853e7cd5e
--- /dev/null
+++ b/changelog.d/14077.doc
@@ -0,0 +1 @@
+Add sample worker files for `pusher` and `federation_sender`.
diff --git a/changelog.d/14078.doc b/changelog.d/14078.doc
new file mode 100644
index 0000000000..cbe3c8b381
--- /dev/null
+++ b/changelog.d/14078.doc
@@ -0,0 +1 @@
+Improve the listener example on the metrics documentation.
diff --git a/changelog.d/14081.doc b/changelog.d/14081.doc
new file mode 100644
index 0000000000..0a6925b3bf
--- /dev/null
+++ b/changelog.d/14081.doc
@@ -0,0 +1 @@
+Expand Google OpenID Connect example config to map email attribute. Contributed by @ptman.
diff --git a/changelog.d/14083.bugfix b/changelog.d/14083.bugfix
new file mode 100644
index 0000000000..752982b1ca
--- /dev/null
+++ b/changelog.d/14083.bugfix
@@ -0,0 +1 @@
+Fix a long-standing bug where Synapse would error on the optional 'invite_room_state' field not being provided to [`PUT /_matrix/federation/v2/invite/{roomId}/{eventId}`](https://spec.matrix.org/v1.4/server-server-api/#put_matrixfederationv2inviteroomideventid).
\ No newline at end of file
diff --git a/changelog.d/14087.doc b/changelog.d/14087.doc
new file mode 100644
index 0000000000..28d1ce67c5
--- /dev/null
+++ b/changelog.d/14087.doc
@@ -0,0 +1 @@
+The changelog entry ending in a full stop or exclamation mark is not optional.
diff --git a/changelog.d/14089.bugfix b/changelog.d/14089.bugfix
new file mode 100644
index 0000000000..4a398921bb
--- /dev/null
+++ b/changelog.d/14089.bugfix
@@ -0,0 +1 @@
+Fix a bug where invalid oEmbed fields would cause the entire response to be discarded. Introduced in Synapse 1.18.0.
diff --git a/changelog.d/14092.misc b/changelog.d/14092.misc
new file mode 100644
index 0000000000..c48f40cd38
--- /dev/null
+++ b/changelog.d/14092.misc
@@ -0,0 +1 @@
+Run the integration test suites with the asyncio reactor enabled in CI.
diff --git a/changelog.d/14093.doc b/changelog.d/14093.doc
new file mode 100644
index 0000000000..cb1ff9490e
--- /dev/null
+++ b/changelog.d/14093.doc
@@ -0,0 +1 @@
+Fix links to jemalloc documentation, which were broken in #13491.
diff --git a/changelog.d/14094.removal b/changelog.d/14094.removal
new file mode 100644
index 0000000000..6ef03b1a0f
--- /dev/null
+++ b/changelog.d/14094.removal
@@ -0,0 +1 @@
+Remove the experimental implementation of [MSC3772](https://github.com/matrix-org/matrix-spec-proposals/pull/3772).
diff --git a/changelog.d/14095.misc b/changelog.d/14095.misc
new file mode 100644
index 0000000000..3483201d5f
--- /dev/null
+++ b/changelog.d/14095.misc
@@ -0,0 +1 @@
+Add debug logs to figure out why an event was filtered out of the client response.
diff --git a/changelog.d/14097.misc b/changelog.d/14097.misc
new file mode 100644
index 0000000000..8392448c4d
--- /dev/null
+++ b/changelog.d/14097.misc
@@ -0,0 +1 @@
+Indicate what endpoint came back with a JSON response we were unable to parse.
diff --git a/changelog.d/14102.bugfix b/changelog.d/14102.bugfix
new file mode 100644
index 0000000000..d71e108f7c
--- /dev/null
+++ b/changelog.d/14102.bugfix
@@ -0,0 +1 @@
+Fix a bug introduced in Synapse v1.37.0 in which an incorrect key name was used for sending and receiving room metadata when knocking on a room.
\ No newline at end of file
diff --git a/changelog.d/14106.removal b/changelog.d/14106.removal
new file mode 100644
index 0000000000..08fa752897
--- /dev/null
+++ b/changelog.d/14106.removal
@@ -0,0 +1 @@
+Remove the unstable identifier for [MSC3715](https://github.com/matrix-org/matrix-doc/pull/3715).
diff --git a/changelog.d/14107.doc b/changelog.d/14107.doc
new file mode 100644
index 0000000000..7063de05cd
--- /dev/null
+++ b/changelog.d/14107.doc
@@ -0,0 +1 @@
+Remove not needed `replication` listener in docker compose example.
diff --git a/changelog.d/14109.misc b/changelog.d/14109.misc
new file mode 100644
index 0000000000..7987c2050f
--- /dev/null
+++ b/changelog.d/14109.misc
@@ -0,0 +1 @@
+Break up calls to fetch rooms for many users. Contributed by Nick @ Beeper (@fizzadar).
diff --git a/changelog.d/14113.misc b/changelog.d/14113.misc
new file mode 100644
index 0000000000..11aafc63ed
--- /dev/null
+++ b/changelog.d/14113.misc
@@ -0,0 +1 @@
+Bump types-pillow from 9.0.15 to 9.2.2.
diff --git a/changelog.d/14114.misc b/changelog.d/14114.misc
new file mode 100644
index 0000000000..273f82c382
--- /dev/null
+++ b/changelog.d/14114.misc
@@ -0,0 +1 @@
+Bump types-psycopg2 from 2.9.9 to 2.9.21.1.
diff --git a/changelog.d/14115.misc b/changelog.d/14115.misc
new file mode 100644
index 0000000000..d93581fac4
--- /dev/null
+++ b/changelog.d/14115.misc
@@ -0,0 +1 @@
+Bump idna from 3.3 to 3.4.
diff --git a/changelog.d/14116.misc b/changelog.d/14116.misc
new file mode 100644
index 0000000000..e020fad075
--- /dev/null
+++ b/changelog.d/14116.misc
@@ -0,0 +1 @@
+Bump bleach from 4.1.0 to 5.0.1.
diff --git a/changelog.d/14124.doc b/changelog.d/14124.doc
new file mode 100644
index 0000000000..f578f93616
--- /dev/null
+++ b/changelog.d/14124.doc
@@ -0,0 +1 @@
+Fix name of `alias_creation_rules` option in the config manual documentation.
\ No newline at end of file
diff --git a/changelog.d/14125.bugfix b/changelog.d/14125.bugfix
new file mode 100644
index 0000000000..852f00ebb9
--- /dev/null
+++ b/changelog.d/14125.bugfix
@@ -0,0 +1 @@
+Fix a bug introduced in v1.69.0rc1 where the joined hosts for a given event were not being properly cached.
diff --git a/changelog.d/14129.bugfix b/changelog.d/14129.bugfix
new file mode 100644
index 0000000000..c392d07d22
--- /dev/null
+++ b/changelog.d/14129.bugfix
@@ -0,0 +1 @@
+Fix pinning Rust dependencies in docker images.
diff --git a/changelog.d/14130.misc b/changelog.d/14130.misc
new file mode 100644
index 0000000000..b801e172f0
--- /dev/null
+++ b/changelog.d/14130.misc
@@ -0,0 +1 @@
+Cache Rust build cache when building docker images.
diff --git a/changelog.d/14132.misc b/changelog.d/14132.misc
new file mode 100644
index 0000000000..c9df48599b
--- /dev/null
+++ b/changelog.d/14132.misc
@@ -0,0 +1 @@
+Enable dependabot for Rust dependencies.
diff --git a/changelog.d/14134.misc b/changelog.d/14134.misc
new file mode 100644
index 0000000000..1ce679b331
--- /dev/null
+++ b/changelog.d/14134.misc
@@ -0,0 +1 @@
+Bump typing-extensions from 4.1.1 to 4.4.0.
diff --git a/changelog.d/14140.feature b/changelog.d/14140.feature
new file mode 100644
index 0000000000..5d0ae16e13
--- /dev/null
+++ b/changelog.d/14140.feature
@@ -0,0 +1 @@
+Support for thread-specific notifications & receipts ([MSC3771](https://github.com/matrix-org/matrix-spec-proposals/pull/3771) and [MSC3773](https://github.com/matrix-org/matrix-spec-proposals/pull/3773)).
diff --git a/changelog.d/14141.docker b/changelog.d/14141.docker
new file mode 100644
index 0000000000..561806cdae
--- /dev/null
+++ b/changelog.d/14141.docker
@@ -0,0 +1 @@
+Use the `minimal` Rust profile when building Synapse.
diff --git a/changelog.d/14141.misc b/changelog.d/14141.misc
new file mode 100644
index 0000000000..561806cdae
--- /dev/null
+++ b/changelog.d/14141.misc
@@ -0,0 +1 @@
+Use the `minimal` Rust profile when building Synapse.
diff --git a/changelog.d/14142.misc b/changelog.d/14142.misc
new file mode 100644
index 0000000000..3649317013
--- /dev/null
+++ b/changelog.d/14142.misc
@@ -0,0 +1 @@
+Remove unused configuration code.
diff --git a/changelog.d/14144.misc b/changelog.d/14144.misc
new file mode 100644
index 0000000000..8a136f5290
--- /dev/null
+++ b/changelog.d/14144.misc
@@ -0,0 +1 @@
+Prepare for the [`gotestfmt` repository move](https://github.com/GoTestTools/gotestfmt/discussions/46).
diff --git a/changelog.d/14146.removal b/changelog.d/14146.removal
new file mode 100644
index 0000000000..08fa752897
--- /dev/null
+++ b/changelog.d/14146.removal
@@ -0,0 +1 @@
+Remove the unstable identifier for [MSC3715](https://github.com/matrix-org/matrix-doc/pull/3715).
diff --git a/changelog.d/14148.feature b/changelog.d/14148.feature
new file mode 100644
index 0000000000..951d0cac80
--- /dev/null
+++ b/changelog.d/14148.feature
@@ -0,0 +1 @@
+Experimental support for [MSC3874](https://github.com/matrix-org/matrix-spec-proposals/pull/3874).
diff --git a/changelog.d/14155.misc b/changelog.d/14155.misc
new file mode 100644
index 0000000000..79539cdc32
--- /dev/null
+++ b/changelog.d/14155.misc
@@ -0,0 +1 @@
+Invalidate rooms for user caches on replicated event, fix sync cache race in synapse workers. Contributed by Nick @ Beeper (@fizzadar).
diff --git a/changelog.d/14159.feature b/changelog.d/14159.feature
new file mode 100644
index 0000000000..5d0ae16e13
--- /dev/null
+++ b/changelog.d/14159.feature
@@ -0,0 +1 @@
+Support for thread-specific notifications & receipts ([MSC3771](https://github.com/matrix-org/matrix-spec-proposals/pull/3771) and [MSC3773](https://github.com/matrix-org/matrix-spec-proposals/pull/3773)).
diff --git a/changelog.d/14161.bugfix b/changelog.d/14161.bugfix
new file mode 100644
index 0000000000..aed4d9e386
--- /dev/null
+++ b/changelog.d/14161.bugfix
@@ -0,0 +1 @@
+Fix a bug introduced in 1.30.0 where purging and rejoining a room without restarting in-between would result in a broken room.
\ No newline at end of file
diff --git a/changelog.d/14163.feature b/changelog.d/14163.feature
new file mode 100644
index 0000000000..5d0ae16e13
--- /dev/null
+++ b/changelog.d/14163.feature
@@ -0,0 +1 @@
+Support for thread-specific notifications & receipts ([MSC3771](https://github.com/matrix-org/matrix-spec-proposals/pull/3771) and [MSC3773](https://github.com/matrix-org/matrix-spec-proposals/pull/3773)).
diff --git a/changelog.d/14164.bugfix b/changelog.d/14164.bugfix
new file mode 100644
index 0000000000..aed4d9e386
--- /dev/null
+++ b/changelog.d/14164.bugfix
@@ -0,0 +1 @@
+Fix a bug introduced in 1.30.0 where purging and rejoining a room without restarting in-between would result in a broken room.
\ No newline at end of file
diff --git a/changelog.d/14165.docker b/changelog.d/14165.docker
new file mode 100644
index 0000000000..7f4bc62520
--- /dev/null
+++ b/changelog.d/14165.docker
@@ -0,0 +1 @@
+Prevent a class of database sharding errors when using `Dockerfile-workers` to spawn multiple instances of the same worker. Contributed by Jason Little.
diff --git a/changelog.d/14171.feature b/changelog.d/14171.feature
new file mode 100644
index 0000000000..df3ce45a76
--- /dev/null
+++ b/changelog.d/14171.feature
@@ -0,0 +1 @@
+Support for [MSC3856](https://github.com/matrix-org/matrix-spec-proposals/pull/3856): threads list API.
diff --git a/changelog.d/14172.bugfix b/changelog.d/14172.bugfix
deleted file mode 100644
index 36521c670c..0000000000
--- a/changelog.d/14172.bugfix
+++ /dev/null
@@ -1 +0,0 @@
-Fix poor performance of the `event_push_backfill_thread_id` background update, which was introduced in Synapse 1.68.0rc1.
diff --git a/changelog.d/14173.docker b/changelog.d/14173.docker
deleted file mode 100644
index 5ad113f435..0000000000
--- a/changelog.d/14173.docker
+++ /dev/null
@@ -1 +0,0 @@
-Fix docker build OOMing in CI for arm64 builds.
diff --git a/changelog.d/14174.feature b/changelog.d/14174.feature
new file mode 100644
index 0000000000..5d0ae16e13
--- /dev/null
+++ b/changelog.d/14174.feature
@@ -0,0 +1 @@
+Support for thread-specific notifications & receipts ([MSC3771](https://github.com/matrix-org/matrix-spec-proposals/pull/3771) and [MSC3773](https://github.com/matrix-org/matrix-spec-proposals/pull/3773)).
diff --git a/changelog.d/14175.feature b/changelog.d/14175.feature
new file mode 100644
index 0000000000..df3ce45a76
--- /dev/null
+++ b/changelog.d/14175.feature
@@ -0,0 +1 @@
+Support for [MSC3856](https://github.com/matrix-org/matrix-spec-proposals/pull/3856): threads list API.
diff --git a/changelog.d/14179.feature b/changelog.d/14179.feature
new file mode 100644
index 0000000000..48f2db91d3
--- /dev/null
+++ b/changelog.d/14179.feature
@@ -0,0 +1 @@
+Improve the validation of the following PUT endpoints: [`/directory/room/{roomAlias}`](https://spec.matrix.org/v1.4/client-server-api/#put_matrixclientv3directoryroomroomalias), [`/directory/list/room/{roomId}`](https://spec.matrix.org/v1.4/client-server-api/#put_matrixclientv3directorylistroomroomid) and [`/directory/list/appservice/{networkId}/{roomId}`](https://spec.matrix.org/v1.4/application-service-api/#put_matrixclientv3directorylistappservicenetworkidroomid).
diff --git a/changelog.d/14181.bugfix b/changelog.d/14181.bugfix
deleted file mode 100644
index 36521c670c..0000000000
--- a/changelog.d/14181.bugfix
+++ /dev/null
@@ -1 +0,0 @@
-Fix poor performance of the `event_push_backfill_thread_id` background update, which was introduced in Synapse 1.68.0rc1.
diff --git a/changelog.d/14182.docker b/changelog.d/14182.docker
new file mode 100644
index 0000000000..a0ce1bce53
--- /dev/null
+++ b/changelog.d/14182.docker
@@ -0,0 +1 @@
+Set LD_PRELOAD to use jemalloc memory allocator in Dockerfile-workers.
diff --git a/changelog.d/14184.feature b/changelog.d/14184.feature
new file mode 100644
index 0000000000..016c704227
--- /dev/null
+++ b/changelog.d/14184.feature
@@ -0,0 +1 @@
+Advertise support for Matrix 1.3 and 1.4 on `/_matrix/client/versions`.
diff --git a/changelog.d/14186.misc b/changelog.d/14186.misc
new file mode 100644
index 0000000000..7b369cd871
--- /dev/null
+++ b/changelog.d/14186.misc
@@ -0,0 +1 @@
+Bump bcrypt from 3.2.0 to 4.0.1.
diff --git a/changelog.d/14187.misc b/changelog.d/14187.misc
new file mode 100644
index 0000000000..2e40b737a7
--- /dev/null
+++ b/changelog.d/14187.misc
@@ -0,0 +1 @@
+Bump types-pillow from 9.2.2 to 9.2.2.1.
diff --git a/changelog.d/14188.misc b/changelog.d/14188.misc
new file mode 100644
index 0000000000..57eadcf197
--- /dev/null
+++ b/changelog.d/14188.misc
@@ -0,0 +1 @@
+Bump types-bleach from 4.1.4 to 5.0.3.
diff --git a/changelog.d/14189.doc b/changelog.d/14189.doc
new file mode 100644
index 0000000000..6c7e556ad9
--- /dev/null
+++ b/changelog.d/14189.doc
@@ -0,0 +1 @@
+Fix dead link to the [Admin Registration API](https://matrix-org.github.io/synapse/latest/admin_api/register_api.html).
diff --git a/changelog.d/14200.misc b/changelog.d/14200.misc
new file mode 100644
index 0000000000..97c6934c23
--- /dev/null
+++ b/changelog.d/14200.misc
@@ -0,0 +1 @@
+Bump psycopg2 from 2.9.3 to 2.9.4.
diff --git a/changelog.d/14201.misc b/changelog.d/14201.misc
new file mode 100644
index 0000000000..1828206a9b
--- /dev/null
+++ b/changelog.d/14201.misc
@@ -0,0 +1 @@
+Bump click from 8.1.1 to 8.1.3.
diff --git a/changelog.d/14217.misc b/changelog.d/14217.misc
new file mode 100644
index 0000000000..625df66637
--- /dev/null
+++ b/changelog.d/14217.misc
@@ -0,0 +1 @@
+Update dependency requirements to allow building with poetry-core 1.3.2.
diff --git a/contrib/docker_compose_workers/README.md b/contrib/docker_compose_workers/README.md
index 4dbfee2853..bdd3dd32e0 100644
--- a/contrib/docker_compose_workers/README.md
+++ b/contrib/docker_compose_workers/README.md
@@ -94,20 +94,6 @@ worker_replication_host: synapse
 worker_replication_http_port: 9093
 ```
 
-### Add Workers to `instance_map`
-
-Locate the `instance_map` section of your `homeserver.yaml` and populate it with your workers:
-
-```yaml
-instance_map:
-  synapse-generic-worker-1:        # The worker_name setting in your worker configuration file
-    host: synapse-generic-worker-1 # The name of the worker service in your Docker Compose file
-    port: 8034                     # The port assigned to the replication listener in your worker config file
-  synapse-federation-sender-1:
-    host: synapse-federation-sender-1
-    port: 8034
-```
-
 ### Configure Federation Senders
 
 This section is applicable if you are using Federation senders (synapse.app.federation_sender). Locate the `send_federation` and `federation_sender_instances` settings in your `homeserver.yaml` and configure them:
@@ -122,4 +108,4 @@ federation_sender_instances:
 
 ## Other Worker types
 
-Using the concepts shown here it is possible to create other worker types in Docker Compose. See the [Workers](https://matrix-org.github.io/synapse/latest/workers.html#available-worker-applications) documentation for a list of available workers.
\ No newline at end of file
+Using the concepts shown here it is possible to create other worker types in Docker Compose. See the [Workers](https://matrix-org.github.io/synapse/latest/workers.html#available-worker-applications) documentation for a list of available workers.
diff --git a/contrib/docker_compose_workers/workers/synapse-federation-sender-1.yaml b/contrib/docker_compose_workers/workers/synapse-federation-sender-1.yaml
index 5ba42a92d2..5b40664d67 100644
--- a/contrib/docker_compose_workers/workers/synapse-federation-sender-1.yaml
+++ b/contrib/docker_compose_workers/workers/synapse-federation-sender-1.yaml
@@ -5,10 +5,4 @@ worker_name: synapse-federation-sender-1
 worker_replication_host: synapse
 worker_replication_http_port: 9093
 
-worker_listeners:
-  - type: http
-    port: 8034
-    resources:
-      - names: [replication]
-
 worker_log_config: /data/federation_sender.log.config
diff --git a/contrib/docker_compose_workers/workers/synapse-generic-worker-1.yaml b/contrib/docker_compose_workers/workers/synapse-generic-worker-1.yaml
index 694584105a..09e55df9f3 100644
--- a/contrib/docker_compose_workers/workers/synapse-generic-worker-1.yaml
+++ b/contrib/docker_compose_workers/workers/synapse-generic-worker-1.yaml
@@ -7,10 +7,6 @@ worker_replication_http_port: 9093
 
 worker_listeners:
   - type: http
-    port: 8034
-    resources:
-      - names: [replication]
-  - type: http
     port: 8081
     x_forwarded: true
     resources:
diff --git a/debian/changelog b/debian/changelog
index e2c3a64f40..f1de7b15d5 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,15 @@
+matrix-synapse-py3 (1.69.0) stable; urgency=medium
+
+  * New Synapse release 1.69.0.
+
+ -- Synapse Packaging team <packages@matrix.org>  Mon, 17 Oct 2022 11:31:03 +0100
+
+matrix-synapse-py3 (1.69.0~rc4) stable; urgency=medium
+
+  * New Synapse release 1.69.0rc4.
+
+ -- Synapse Packaging team <packages@matrix.org>  Fri, 14 Oct 2022 15:04:47 +0100
+
 matrix-synapse-py3 (1.69.0~rc3) stable; urgency=medium
 
   * New Synapse release 1.69.0rc3.
diff --git a/docker/Dockerfile b/docker/Dockerfile
index 62f0a9bf93..7f8756e8a4 100644
--- a/docker/Dockerfile
+++ b/docker/Dockerfile
@@ -106,7 +106,7 @@ ENV CARGO_HOME=/cargo
 ENV PATH=/cargo/bin:/rust/bin:$PATH
 RUN mkdir /rust /cargo
 
-RUN curl -sSf https://sh.rustup.rs | sh -s -- -y --no-modify-path --default-toolchain stable
+RUN curl -sSf https://sh.rustup.rs | sh -s -- -y --no-modify-path --default-toolchain stable --profile minimal
 
 
 # arm64 builds consume a lot of memory if `CARGO_NET_GIT_FETCH_WITH_CLI` is not
@@ -135,7 +135,9 @@ ARG TEST_ONLY_IGNORE_POETRY_LOCKFILE
 # Install the synapse package itself.
 # If we have populated requirements.txt, we don't install any dependencies
 # as we should already have those from the previous `pip install` step.
-RUN if [ -z "$TEST_ONLY_IGNORE_POETRY_LOCKFILE" ]; then \
+RUN --mount=type=cache,target=/synapse/target,sharing=locked \
+  --mount=type=cache,target=${CARGO_HOME}/registry,sharing=locked \
+  if [ -z "$TEST_ONLY_IGNORE_POETRY_LOCKFILE" ]; then \
     pip install --prefix="/install" --no-deps --no-warn-script-location /synapse[all]; \
   else \
     pip install --prefix="/install" --no-warn-script-location /synapse[all]; \
diff --git a/docker/Dockerfile-dhvirtualenv b/docker/Dockerfile-dhvirtualenv
index ca3a259081..73165f6f85 100644
--- a/docker/Dockerfile-dhvirtualenv
+++ b/docker/Dockerfile-dhvirtualenv
@@ -92,7 +92,7 @@ ENV CARGO_HOME=/cargo
 ENV PATH=/cargo/bin:/rust/bin:$PATH
 RUN mkdir /rust /cargo
 
-RUN curl -sSf https://sh.rustup.rs | sh -s -- -y --no-modify-path --default-toolchain stable
+RUN curl -sSf https://sh.rustup.rs | sh -s -- -y --no-modify-path --default-toolchain stable --profile minimal
 
 
 COPY --from=builder /dh-virtualenv_1.2.2-1_all.deb /
diff --git a/docker/Dockerfile-workers b/docker/Dockerfile-workers
index 003a1cc3bf..0c2d4f3047 100644
--- a/docker/Dockerfile-workers
+++ b/docker/Dockerfile-workers
@@ -40,7 +40,11 @@ FROM matrixdotorg/synapse:$SYNAPSE_VERSION
     COPY --from=deps_base /etc/nginx /etc/nginx
     RUN rm /etc/nginx/sites-enabled/default
     RUN mkdir /var/log/nginx /var/lib/nginx
-    RUN chown www-data /var/log/nginx /var/lib/nginx
+    RUN chown www-data /var/lib/nginx
+
+    # have nginx log to stderr/out
+    RUN ln -sf /dev/stdout /var/log/nginx/access.log
+    RUN ln -sf /dev/stderr /var/log/nginx/error.log
 
     # Copy Synapse worker, nginx and supervisord configuration template files
     COPY ./docker/conf-workers/* /conf/
diff --git a/docker/README.md b/docker/README.md
index 017f046c58..eda3221c23 100644
--- a/docker/README.md
+++ b/docker/README.md
@@ -241,4 +241,4 @@ healthcheck:
 
 Jemalloc is embedded in the image and will be used instead of the default allocator.
 You can read about jemalloc by reading the Synapse
-[README](https://github.com/matrix-org/synapse/blob/HEAD/README.rst#help-synapse-is-slow-and-eats-all-my-ram-cpu).
+[Admin FAQ](https://matrix-org.github.io/synapse/latest/usage/administration/admin_faq.html#help-synapse-is-slow-and-eats-all-my-ramcpu).
diff --git a/docker/complement/conf/start_for_complement.sh b/docker/complement/conf/start_for_complement.sh
index cc6482f763..bb85d9fed7 100755
--- a/docker/complement/conf/start_for_complement.sh
+++ b/docker/complement/conf/start_for_complement.sh
@@ -57,6 +57,7 @@ if [[ -n "$SYNAPSE_COMPLEMENT_USE_WORKERS" ]]; then
       federation_reader, \
       federation_sender, \
       synchrotron, \
+      client_reader, \
       appservice, \
       pusher"
 
diff --git a/docker/configure_workers_and_start.py b/docker/configure_workers_and_start.py
index 51583dc13d..60a5c10ea7 100755
--- a/docker/configure_workers_and_start.py
+++ b/docker/configure_workers_and_start.py
@@ -39,6 +39,7 @@
 # continue to work if so.
 
 import os
+import platform
 import subprocess
 import sys
 from pathlib import Path
@@ -107,6 +108,34 @@ WORKERS_CONFIG: Dict[str, Dict[str, Any]] = {
         "shared_extra_conf": {},
         "worker_extra_conf": "",
     },
+    "client_reader": {
+        "app": "synapse.app.generic_worker",
+        "listener_resources": ["client"],
+        "endpoint_patterns": [
+            "^/_matrix/client/(api/v1|r0|v3|unstable)/publicRooms$",
+            "^/_matrix/client/(api/v1|r0|v3|unstable)/rooms/.*/joined_members$",
+            "^/_matrix/client/(api/v1|r0|v3|unstable)/rooms/.*/context/.*$",
+            "^/_matrix/client/(api/v1|r0|v3|unstable)/rooms/.*/members$",
+            "^/_matrix/client/(api/v1|r0|v3|unstable)/rooms/.*/state$",
+            "^/_matrix/client/v1/rooms/.*/hierarchy$",
+            "^/_matrix/client/(v1|unstable)/rooms/.*/relations/",
+            "^/_matrix/client/v1/rooms/.*/threads$",
+            "^/_matrix/client/(api/v1|r0|v3|unstable)/login$",
+            "^/_matrix/client/(api/v1|r0|v3|unstable)/account/3pid$",
+            "^/_matrix/client/(api/v1|r0|v3|unstable)/account/whoami$",
+            "^/_matrix/client/versions$",
+            "^/_matrix/client/(api/v1|r0|v3|unstable)/voip/turnServer$",
+            "^/_matrix/client/(r0|v3|unstable)/register$",
+            "^/_matrix/client/(r0|v3|unstable)/auth/.*/fallback/web$",
+            "^/_matrix/client/(api/v1|r0|v3|unstable)/rooms/.*/messages$",
+            "^/_matrix/client/(api/v1|r0|v3|unstable)/rooms/.*/event",
+            "^/_matrix/client/(api/v1|r0|v3|unstable)/joined_rooms",
+            "^/_matrix/client/(api/v1|r0|v3|unstable/.*)/rooms/.*/aliases",
+            "^/_matrix/client/(api/v1|r0|v3|unstable)/search",
+        ],
+        "shared_extra_conf": {},
+        "worker_extra_conf": "",
+    },
     "federation_reader": {
         "app": "synapse.app.generic_worker",
         "listener_resources": ["federation"],
@@ -373,8 +402,8 @@ def generate_worker_files(
         # No workers, just the main process
         worker_types = []
     else:
-        # Split type names by comma
-        worker_types = worker_types_env.split(",")
+        # Split type names by comma, ignoring whitespace.
+        worker_types = [x.strip() for x in worker_types_env.split(",")]
 
     # Create the worker configuration directory if it doesn't already exist
     os.makedirs("/conf/workers", exist_ok=True)
@@ -393,8 +422,6 @@ def generate_worker_files(
 
     # For each worker type specified by the user, create config values
     for worker_type in worker_types:
-        worker_type = worker_type.strip()
-
         worker_config = WORKERS_CONFIG.get(worker_type)
         if worker_config:
             worker_config = worker_config.copy()
@@ -604,14 +631,23 @@ def main(args: List[str], environ: MutableMapping[str, str]) -> None:
         with open(mark_filepath, "w") as f:
             f.write("")
 
+    # Lifted right out of start.py
+    jemallocpath = "/usr/lib/%s-linux-gnu/libjemalloc.so.2" % (platform.machine(),)
+
+    if os.path.isfile(jemallocpath):
+        environ["LD_PRELOAD"] = jemallocpath
+    else:
+        log("Could not find %s, will not use" % (jemallocpath,))
+
     # Start supervisord, which will start Synapse, all of the configured worker
     # processes, redis, nginx etc. according to the config we created above.
     log("Starting supervisord")
-    os.execl(
+    os.execle(
         "/usr/local/bin/supervisord",
         "supervisord",
         "-c",
         "/etc/supervisor/supervisord.conf",
+        environ,
     )
 
 
diff --git a/docs/development/contributing_guide.md b/docs/development/contributing_guide.md
index 5c37225168..1e52f9808c 100644
--- a/docs/development/contributing_guide.md
+++ b/docs/development/contributing_guide.md
@@ -333,7 +333,7 @@ SYNAPSE_TEST_LOG_LEVEL=DEBUG COMPLEMENT_DIR=../complement ./scripts-dev/compleme
 ### Prettier formatting with `gotestfmt`
 
 If you want to format the output of the tests the same way as it looks in CI,
-install [gotestfmt](https://github.com/haveyoudebuggedit/gotestfmt).
+install [gotestfmt](https://github.com/GoTestTools/gotestfmt).
 
 You can then use this incantation to format the tests appropriately:
 
@@ -390,7 +390,7 @@ This file will become part of our [changelog](
 https://github.com/matrix-org/synapse/blob/master/CHANGES.md) at the next
 release, so the content of the file should be a short description of your
 change in the same style as the rest of the changelog. The file can contain Markdown
-formatting, and should end with a full stop (.) or an exclamation mark (!) for
+formatting, and must end with a full stop (.) or an exclamation mark (!) for
 consistency.
 
 Adding credits to the changelog is encouraged, we value your
diff --git a/docs/metrics-howto.md b/docs/metrics-howto.md
index d8416b5a5f..8f1f11f2b2 100644
--- a/docs/metrics-howto.md
+++ b/docs/metrics-howto.md
@@ -16,14 +16,21 @@
     There are two methods of enabling the metrics endpoint in Synapse.
 
     The first serves the metrics as a part of the usual web server and
-    can be enabled by adding the \"metrics\" resource to the existing
-    listener as such:
+    can be enabled by adding the `metrics` resource to the existing
+    listener as such as in this example:
 
     ```yaml
-      resources:
-        - names:
-          - client
-          - metrics
+    listeners:
+      - port: 8008
+        tls: false
+        type: http
+        x_forwarded: true
+        bind_addresses: ['::1', '127.0.0.1']
+
+        resources:
+          # added "metrics" in this line
+          - names: [client, federation, metrics]
+            compress: false
     ```
 
     This provides a simple way of adding metrics to your Synapse
@@ -37,14 +44,24 @@
     to just internal networks easier. The served metrics are available
     over HTTP only, and will be available at `/_synapse/metrics`.
 
-    Add a new listener to homeserver.yaml:
+    Add a new listener to homeserver.yaml as in this example:
 
     ```yaml
-      listeners:
-        - type: metrics
-          port: 9000
-          bind_addresses:
-            - '0.0.0.0'
+    listeners:
+      - port: 8008
+        tls: false
+        type: http
+        x_forwarded: true
+        bind_addresses: ['::1', '127.0.0.1']
+
+        resources:
+          - names: [client, federation]
+            compress: false
+
+      # beginning of the new metrics listener
+      - port: 9000
+        type: metrics
+        bind_addresses: ['::1', '127.0.0.1']
     ```
 
 1.  Restart Synapse.
diff --git a/docs/openid.md b/docs/openid.md
index ce9b026228..87ebea4c29 100644
--- a/docs/openid.md
+++ b/docs/openid.md
@@ -336,11 +336,12 @@ oidc_providers:
        issuer: "https://accounts.google.com/"
        client_id: "your-client-id" # TO BE FILLED
        client_secret: "your-client-secret" # TO BE FILLED
-       scopes: ["openid", "profile"]
+       scopes: ["openid", "profile", "email"] # email is optional, read below
        user_mapping_provider:
          config:
            localpart_template: "{{ user.given_name|lower }}"
            display_name_template: "{{ user.name }}"
+           email_template: "{{ user.email }}" # needs "email" in scopes above
    ```
 4. Back in the Google console, add this Authorized redirect URI: `[synapse
    public baseurl]/_synapse/client/oidc/callback`.
@@ -423,7 +424,7 @@ Synapse config:
     user_mapping_provider:
       config:
         display_name_template: "{{ user.name }}"
-        email_template: "{{ '{{ user.email }}' }}"
+        email_template: "{{ user.email }}"
 ```
 
 Relevant documents:
diff --git a/docs/systemd-with-workers/workers/federation_sender.yaml b/docs/systemd-with-workers/workers/federation_sender.yaml
new file mode 100644
index 0000000000..5c591aec2c
--- /dev/null
+++ b/docs/systemd-with-workers/workers/federation_sender.yaml
@@ -0,0 +1,8 @@
+worker_app: synapse.app.federation_sender
+worker_name: federation_sender1
+
+# The replication listener on the main synapse process.
+worker_replication_host: 127.0.0.1
+worker_replication_http_port: 9093
+
+worker_log_config: /etc/matrix-synapse/federation-sender-log.yaml
diff --git a/docs/systemd-with-workers/workers/pusher_worker.yaml b/docs/systemd-with-workers/workers/pusher_worker.yaml
new file mode 100644
index 0000000000..46e22c6f06
--- /dev/null
+++ b/docs/systemd-with-workers/workers/pusher_worker.yaml
@@ -0,0 +1,8 @@
+worker_app: synapse.app.pusher
+worker_name: pusher_worker1
+
+# The replication listener on the main synapse process.
+worker_replication_host: 127.0.0.1
+worker_replication_http_port: 9093
+
+worker_log_config: /etc/matrix-synapse/pusher-worker-log.yaml
diff --git a/docs/usage/configuration/config_documentation.md b/docs/usage/configuration/config_documentation.md
index 8a71a934ea..7c91a3ac4e 100644
--- a/docs/usage/configuration/config_documentation.md
+++ b/docs/usage/configuration/config_documentation.md
@@ -1139,7 +1139,7 @@ number of entries that can be stored.
 
 * `cache_autotuning` and its sub-options `max_cache_memory_usage`, `target_cache_memory_usage`, and
    `min_cache_ttl` work in conjunction with each other to maintain a balance between cache memory
-   usage and cache entry availability. You must be using [jemalloc](https://github.com/matrix-org/synapse#help-synapse-is-slow-and-eats-all-my-ramcpu)
+   usage and cache entry availability. You must be using [jemalloc](../administration/admin_faq.md#help-synapse-is-slow-and-eats-all-my-ramcpu)
    to utilize this option, and all three of the options must be specified for this feature to work. This option
    defaults to off, enable it by providing values for the sub-options listed below. Please note that the feature will not work
    and may cause unstable behavior (such as excessive emptying of caches or exceptions) if all of the values are not provided.
@@ -2088,7 +2088,7 @@ set.
 
 This is primarily intended for use with the `register_new_matrix_user` script
 (see [Registering a user](../../setup/installation.md#registering-a-user));
-however, the interface is [documented](../admin_api/register_api.html).
+however, the interface is [documented](../../admin_api/register_api.html).
 
 See also [`registration_shared_secret_path`](#registration_shared_secret_path).
 
@@ -3541,9 +3541,9 @@ Example configuration:
 enable_room_list_search: false
 ```
 ---
-### `alias_creation`
+### `alias_creation_rules`
 
-The `alias_creation` option controls who is allowed to create aliases
+The `alias_creation_rules` option controls who is allowed to create aliases
 on this server.
 
 The format of this option is a list of rules that contain globs that
diff --git a/docs/workers.md b/docs/workers.md
index 25f2e13237..c27b3f8bd5 100644
--- a/docs/workers.md
+++ b/docs/workers.md
@@ -203,6 +203,8 @@ information.
     ^/_matrix/client/(api/v1|r0|v3|unstable)/rooms/.*/members$
     ^/_matrix/client/(api/v1|r0|v3|unstable)/rooms/.*/state$
     ^/_matrix/client/v1/rooms/.*/hierarchy$
+    ^/_matrix/client/(v1|unstable)/rooms/.*/relations/
+    ^/_matrix/client/v1/rooms/.*/threads$
     ^/_matrix/client/unstable/org.matrix.msc2716/rooms/.*/batch_send$
     ^/_matrix/client/unstable/im.nheko.summary/rooms/.*/summary$
     ^/_matrix/client/(r0|v3|unstable)/account/3pid$
@@ -488,6 +490,12 @@ pusher_instances:
     - pusher_worker2
 ```
 
+An example for a pusher instance:
+
+```yaml
+{{#include systemd-with-workers/workers/pusher_worker.yaml}}
+```
+
 
 ### `synapse.app.appservice`
 
@@ -518,6 +526,12 @@ federation_sender_instances:
     - federation_sender2
 ```
 
+An example for a federation sender instance:
+
+```yaml
+{{#include systemd-with-workers/workers/federation_sender.yaml}}
+```
+
 ### `synapse.app.media_repository`
 
 Handles the media repository. It can handle all endpoints starting with:
diff --git a/poetry.lock b/poetry.lock
index 63ef8573a0..f76b010fd0 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -10,21 +10,18 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 dev = ["cloudpickle", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "mypy", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "six", "sphinx", "sphinx-notfound-page", "zope.interface"]
 docs = ["furo", "sphinx", "sphinx-notfound-page", "zope.interface"]
 tests = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "six", "zope.interface"]
-tests_no_zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "six"]
+tests-no-zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "six"]
 
 [[package]]
-name = "authlib"
-version = "0.15.5"
-description = "The ultimate Python library in building OAuth and OpenID Connect servers."
+name = "Authlib"
+version = "1.1.0"
+description = "The ultimate Python library in building OAuth and OpenID Connect servers and clients."
 category = "main"
 optional = true
 python-versions = "*"
 
 [package.dependencies]
-cryptography = "*"
-
-[package.extras]
-client = ["requests"]
+cryptography = ">=3.2"
 
 [[package]]
 name = "automat"
@@ -43,16 +40,12 @@ visualize = ["Twisted (>=16.1.1)", "graphviz (>0.5.1)"]
 
 [[package]]
 name = "bcrypt"
-version = "3.2.0"
+version = "4.0.1"
 description = "Modern password hashing for your software and your servers"
 category = "main"
 optional = false
 python-versions = ">=3.6"
 
-[package.dependencies]
-cffi = ">=1.1"
-six = ">=1.4.1"
-
 [package.extras]
 tests = ["pytest (>=3.2.1,!=3.3.0)"]
 typecheck = ["mypy"]
@@ -82,17 +75,20 @@ uvloop = ["uvloop (>=0.15.2)"]
 
 [[package]]
 name = "bleach"
-version = "4.1.0"
+version = "5.0.1"
 description = "An easy safelist-based HTML-sanitizing tool."
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
-packaging = "*"
 six = ">=1.9.0"
 webencodings = "*"
 
+[package.extras]
+css = ["tinycss2 (>=1.1.0,<1.2)"]
+dev = ["Sphinx (==4.3.2)", "black (==22.3.0)", "build (==0.8.0)", "flake8 (==4.0.1)", "hashin (==0.17.0)", "mypy (==0.961)", "pip-tools (==6.6.2)", "pytest (==7.1.2)", "tox (==3.25.0)", "twine (==4.0.1)", "wheel (==0.37.1)"]
+
 [[package]]
 name = "canonicaljson"
 version = "1.6.3"
@@ -136,11 +132,11 @@ optional = false
 python-versions = ">=3.5.0"
 
 [package.extras]
-unicode_backport = ["unicodedata2"]
+unicode-backport = ["unicodedata2"]
 
 [[package]]
 name = "click"
-version = "8.1.1"
+version = "8.1.3"
 description = "Composable command line interface toolkit"
 category = "dev"
 optional = false
@@ -291,7 +287,7 @@ importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
 
 [[package]]
 name = "frozendict"
-version = "2.3.3"
+version = "2.3.4"
 description = "A simple immutable dictionary"
 category = "main"
 optional = false
@@ -341,7 +337,7 @@ idna = ">=2.5"
 
 [[package]]
 name = "idna"
-version = "3.3"
+version = "3.4"
 description = "Internationalized Domain Names in Applications (IDNA)"
 category = "main"
 optional = false
@@ -399,16 +395,17 @@ scripts = ["click (>=6.0)", "twisted (>=16.4.0)"]
 
 [[package]]
 name = "isort"
-version = "5.7.0"
+version = "5.10.1"
 description = "A Python utility / library to sort Python imports."
 category = "dev"
 optional = false
-python-versions = ">=3.6,<4.0"
+python-versions = ">=3.6.1,<4.0"
 
 [package.extras]
 colors = ["colorama (>=0.4.3,<0.5.0)"]
-pipfile_deprecated_finder = ["pipreqs", "requirementslib"]
-requirements_deprecated_finder = ["pip-api", "pipreqs"]
+pipfile-deprecated-finder = ["pipreqs", "requirementslib"]
+plugins = ["setuptools"]
+requirements-deprecated-finder = ["pip-api", "pipreqs"]
 
 [[package]]
 name = "jaeger-client"
@@ -455,7 +452,7 @@ i18n = ["Babel (>=2.7)"]
 
 [[package]]
 name = "jsonschema"
-version = "4.4.0"
+version = "4.16.0"
 description = "An implementation of JSON Schema validation for Python"
 category = "main"
 optional = false
@@ -465,12 +462,13 @@ python-versions = ">=3.7"
 attrs = ">=17.4.0"
 importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
 importlib-resources = {version = ">=1.4.0", markers = "python_version < \"3.9\""}
+pkgutil-resolve-name = {version = ">=1.3.10", markers = "python_version < \"3.9\""}
 pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2"
 typing-extensions = {version = "*", markers = "python_version < \"3.8\""}
 
 [package.extras]
 format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"]
-format_nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"]
+format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"]
 
 [[package]]
 name = "keyring"
@@ -565,8 +563,8 @@ python-versions = "*"
 
 [[package]]
 name = "msgpack"
-version = "1.0.3"
-description = "MessagePack (de)serializer."
+version = "1.0.4"
+description = "MessagePack serializer"
 category = "main"
 optional = false
 python-versions = "*"
@@ -665,7 +663,7 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
 
 [[package]]
 name = "phonenumbers"
-version = "8.12.44"
+version = "8.12.56"
 description = "Python version of Google's common library for parsing, formatting, storing and validating international phone numbers."
 category = "main"
 optional = false
@@ -691,6 +689,14 @@ python-versions = "*"
 testing = ["coverage", "nose"]
 
 [[package]]
+name = "pkgutil_resolve_name"
+version = "1.3.10"
+description = "Resolve a name to an object."
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[[package]]
 name = "platformdirs"
 version = "2.5.1"
 description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
@@ -715,7 +721,7 @@ twisted = ["twisted"]
 
 [[package]]
 name = "psycopg2"
-version = "2.9.3"
+version = "2.9.4"
 description = "psycopg2 - Python-PostgreSQL Database Adapter"
 category = "main"
 optional = true
@@ -781,14 +787,14 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "pydantic"
-version = "1.9.1"
+version = "1.10.2"
 description = "Data validation and settings management using python type hints"
 category = "main"
 optional = false
-python-versions = ">=3.6.1"
+python-versions = ">=3.7"
 
 [package.dependencies]
-typing-extensions = ">=3.7.4.3"
+typing-extensions = ">=4.1.0"
 
 [package.extras]
 dotenv = ["python-dotenv (>=0.10.4)"]
@@ -1000,7 +1006,7 @@ urllib3 = ">=1.21.1,<1.27"
 
 [package.extras]
 socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"]
-use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"]
+use-chardet-on-py3 = ["chardet (>=3.0.2,<5)"]
 
 [[package]]
 name = "requests-toolbelt"
@@ -1070,7 +1076,7 @@ django = ["django (>=1.8)"]
 falcon = ["falcon (>=1.4)"]
 flask = ["blinker (>=1.1)", "flask (>=0.11)"]
 httpx = ["httpx (>=0.16.0)"]
-pure_eval = ["asttokens", "executing", "pure-eval"]
+pure-eval = ["asttokens", "executing", "pure-eval"]
 pyspark = ["pyspark (>=2.4.4)"]
 quart = ["blinker (>=1.1)", "quart (>=0.16.1)"]
 rq = ["rq (>=0.6)"]
@@ -1322,20 +1328,20 @@ typing-extensions = ">=3.6.5"
 "zope.interface" = ">=4.4.2"
 
 [package.extras]
-all_non_platform = ["PyHamcrest (>=1.9.0)", "appdirs (>=1.4.0)", "bcrypt (>=3.0.0)", "contextvars (>=2.4,<3)", "cryptography (>=2.6)", "cython-test-exception-raiser (>=1.0.2,<2)", "h2 (>=3.0,<5.0)", "idna (>=2.4)", "priority (>=1.1.0,<2.0)", "pyasn1", "pyopenssl (>=16.0.0)", "pyserial (>=3.0)", "pywin32 (!=226)", "service-identity (>=18.1.0)"]
+all-non-platform = ["PyHamcrest (>=1.9.0)", "appdirs (>=1.4.0)", "bcrypt (>=3.0.0)", "contextvars (>=2.4,<3)", "cryptography (>=2.6)", "cython-test-exception-raiser (>=1.0.2,<2)", "h2 (>=3.0,<5.0)", "idna (>=2.4)", "priority (>=1.1.0,<2.0)", "pyasn1", "pyopenssl (>=16.0.0)", "pyserial (>=3.0)", "pywin32 (!=226)", "service-identity (>=18.1.0)"]
 conch = ["appdirs (>=1.4.0)", "bcrypt (>=3.0.0)", "cryptography (>=2.6)", "pyasn1"]
-conch_nacl = ["PyNaCl", "appdirs (>=1.4.0)", "bcrypt (>=3.0.0)", "cryptography (>=2.6)", "pyasn1"]
+conch-nacl = ["PyNaCl", "appdirs (>=1.4.0)", "bcrypt (>=3.0.0)", "cryptography (>=2.6)", "pyasn1"]
 contextvars = ["contextvars (>=2.4,<3)"]
 dev = ["coverage (>=6b1,<7)", "pydoctor (>=21.9.0,<21.10.0)", "pyflakes (>=2.2,<3.0)", "python-subunit (>=1.4,<2.0)", "readthedocs-sphinx-ext (>=2.1,<3.0)", "sphinx (>=4.1.2,<6)", "sphinx-rtd-theme (>=0.5,<1.0)", "towncrier (>=19.2,<20.0)", "twistedchecker (>=0.7,<1.0)"]
-dev_release = ["pydoctor (>=21.9.0,<21.10.0)", "readthedocs-sphinx-ext (>=2.1,<3.0)", "sphinx (>=4.1.2,<6)", "sphinx-rtd-theme (>=0.5,<1.0)", "towncrier (>=19.2,<20.0)"]
+dev-release = ["pydoctor (>=21.9.0,<21.10.0)", "readthedocs-sphinx-ext (>=2.1,<3.0)", "sphinx (>=4.1.2,<6)", "sphinx-rtd-theme (>=0.5,<1.0)", "towncrier (>=19.2,<20.0)"]
 http2 = ["h2 (>=3.0,<5.0)", "priority (>=1.1.0,<2.0)"]
-macos_platform = ["PyHamcrest (>=1.9.0)", "appdirs (>=1.4.0)", "bcrypt (>=3.0.0)", "contextvars (>=2.4,<3)", "cryptography (>=2.6)", "cython-test-exception-raiser (>=1.0.2,<2)", "h2 (>=3.0,<5.0)", "idna (>=2.4)", "priority (>=1.1.0,<2.0)", "pyasn1", "pyobjc-core", "pyobjc-framework-CFNetwork", "pyobjc-framework-Cocoa", "pyopenssl (>=16.0.0)", "pyserial (>=3.0)", "pywin32 (!=226)", "service-identity (>=18.1.0)"]
+macos-platform = ["PyHamcrest (>=1.9.0)", "appdirs (>=1.4.0)", "bcrypt (>=3.0.0)", "contextvars (>=2.4,<3)", "cryptography (>=2.6)", "cython-test-exception-raiser (>=1.0.2,<2)", "h2 (>=3.0,<5.0)", "idna (>=2.4)", "priority (>=1.1.0,<2.0)", "pyasn1", "pyobjc-core", "pyobjc-framework-CFNetwork", "pyobjc-framework-Cocoa", "pyopenssl (>=16.0.0)", "pyserial (>=3.0)", "pywin32 (!=226)", "service-identity (>=18.1.0)"]
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+osx-platform = ["PyHamcrest (>=1.9.0)", "appdirs (>=1.4.0)", "bcrypt (>=3.0.0)", "contextvars (>=2.4,<3)", "cryptography (>=2.6)", "cython-test-exception-raiser (>=1.0.2,<2)", "h2 (>=3.0,<5.0)", "idna (>=2.4)", "priority (>=1.1.0,<2.0)", "pyasn1", "pyobjc-core", "pyobjc-framework-CFNetwork", "pyobjc-framework-Cocoa", "pyopenssl (>=16.0.0)", "pyserial (>=3.0)", "pywin32 (!=226)", "service-identity (>=18.1.0)"]
 serial = ["pyserial (>=3.0)", "pywin32 (!=226)"]
 test = ["PyHamcrest (>=1.9.0)", "cython-test-exception-raiser (>=1.0.2,<2)"]
 tls = ["idna (>=2.4)", "pyopenssl (>=16.0.0)", "service-identity (>=18.1.0)"]
-windows_platform = ["PyHamcrest (>=1.9.0)", "appdirs (>=1.4.0)", "bcrypt (>=3.0.0)", "contextvars (>=2.4,<3)", "cryptography (>=2.6)", "cython-test-exception-raiser (>=1.0.2,<2)", "h2 (>=3.0,<5.0)", "idna (>=2.4)", "priority (>=1.1.0,<2.0)", "pyasn1", "pyopenssl (>=16.0.0)", "pyserial (>=3.0)", "pywin32 (!=226)", "pywin32 (!=226)", "service-identity (>=18.1.0)"]
+windows-platform = ["PyHamcrest (>=1.9.0)", "appdirs (>=1.4.0)", "bcrypt (>=3.0.0)", "contextvars (>=2.4,<3)", "cryptography (>=2.6)", "cython-test-exception-raiser (>=1.0.2,<2)", "h2 (>=3.0,<5.0)", "idna (>=2.4)", "priority (>=1.1.0,<2.0)", "pyasn1", "pyopenssl (>=16.0.0)", "pyserial (>=3.0)", "pywin32 (!=226)", "pywin32 (!=226)", "service-identity (>=18.1.0)"]
 
 [[package]]
 name = "twisted-iocpsupport"
@@ -1367,7 +1373,7 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "types-bleach"
-version = "4.1.4"
+version = "5.0.3"
 description = "Typing stubs for bleach"
 category = "dev"
 optional = false
@@ -1427,7 +1433,7 @@ python-versions = "*"
 
 [[package]]
 name = "types-pillow"
-version = "9.0.15"
+version = "9.2.2.1"
 description = "Typing stubs for Pillow"
 category = "dev"
 optional = false
@@ -1435,15 +1441,15 @@ python-versions = "*"
 
 [[package]]
 name = "types-psycopg2"
-version = "2.9.9"
+version = "2.9.21.1"
 description = "Typing stubs for psycopg2"
 category = "dev"
 optional = false
 python-versions = "*"
 
 [[package]]
-name = "types-pyopenssl"
-version = "22.0.0"
+name = "types-pyOpenSSL"
+version = "22.0.10"
 description = "Typing stubs for pyOpenSSL"
 category = "dev"
 optional = false
@@ -1453,8 +1459,8 @@ python-versions = "*"
 types-cryptography = "*"
 
 [[package]]
-name = "types-pyyaml"
-version = "6.0.4"
+name = "types-PyYAML"
+version = "6.0.12"
 description = "Typing stubs for PyYAML"
 category = "dev"
 optional = false
@@ -1462,7 +1468,7 @@ python-versions = "*"
 
 [[package]]
 name = "types-requests"
-version = "2.27.11"
+version = "2.28.11"
 description = "Typing stubs for requests"
 category = "dev"
 optional = false
@@ -1473,7 +1479,7 @@ types-urllib3 = "<1.27"
 
 [[package]]
 name = "types-setuptools"
-version = "57.4.9"
+version = "65.4.0.0"
 description = "Typing stubs for setuptools"
 category = "dev"
 optional = false
@@ -1489,11 +1495,11 @@ python-versions = "*"
 
 [[package]]
 name = "typing-extensions"
-version = "4.1.1"
-description = "Backported and Experimental Type Hints for Python 3.6+"
+version = "4.4.0"
+description = "Backported and Experimental Type Hints for Python 3.7+"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [[package]]
 name = "unpaddedbase64"
@@ -1610,7 +1616,7 @@ test = ["zope.i18nmessageid", "zope.testing", "zope.testrunner"]
 
 [extras]
 all = ["matrix-synapse-ldap3", "psycopg2", "psycopg2cffi", "psycopg2cffi-compat", "pysaml2", "authlib", "lxml", "sentry-sdk", "jaeger-client", "opentracing", "txredisapi", "hiredis", "Pympler"]
-cache_memory = ["Pympler"]
+cache-memory = ["Pympler"]
 jwt = ["authlib"]
 matrix-synapse-ldap3 = ["matrix-synapse-ldap3"]
 oidc = ["authlib"]
@@ -1621,37 +1627,48 @@ saml2 = ["pysaml2"]
 sentry = ["sentry-sdk"]
 systemd = ["systemd-python"]
 test = ["parameterized", "idna"]
-url_preview = ["lxml"]
+url-preview = ["lxml"]
 
 [metadata]
 lock-version = "1.1"
 python-versions = "^3.7.1"
-content-hash = "1b14fc274d9e2a495a7f864150f3ffcf4d9f585e09a67e53301ae4ef3c2f3e48"
+content-hash = "327eb55e543f29feac9ca1a014f17c48fdf01a96bbed9ed9237dab787e9ac614"
 
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@@ -1679,8 +1696,8 @@ black = [
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+    {file = "pydantic-1.10.2-cp39-cp39-musllinux_1_1_x86_64.whl", hash = "sha256:2e05aed07fa02231dbf03d0adb1be1d79cabb09025dd45aa094aa8b4e7b9dcda"},
+    {file = "pydantic-1.10.2-cp39-cp39-win_amd64.whl", hash = "sha256:c1ba1afb396148bbc70e9eaa8c06c1716fdddabaf86e7027c5988bae2a829ab6"},
+    {file = "pydantic-1.10.2-py3-none-any.whl", hash = "sha256:1b6ee725bd6e83ec78b1aa32c5b1fa67a3a65badddde3976bca5fe4568f27709"},
+    {file = "pydantic-1.10.2.tar.gz", hash = "sha256:91b8e218852ef6007c2b98cd861601c6a09f1aa32bbbb74fab5b1c33d4a1e410"},
 ]
 pyflakes = [
     {file = "pyflakes-2.4.0-py2.py3-none-any.whl", hash = "sha256:3bb3a3f256f4b7968c9c788781e4ff07dce46bdf12339dcda61053375426ee2e"},
@@ -2452,6 +2467,13 @@ pyyaml = [
     {file = "PyYAML-6.0-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:f84fbc98b019fef2ee9a1cb3ce93e3187a6df0b2538a651bfb890254ba9f90b5"},
     {file = "PyYAML-6.0-cp310-cp310-win32.whl", hash = "sha256:2cd5df3de48857ed0544b34e2d40e9fac445930039f3cfe4bcc592a1f836d513"},
     {file = "PyYAML-6.0-cp310-cp310-win_amd64.whl", hash = "sha256:daf496c58a8c52083df09b80c860005194014c3698698d1a57cbcfa182142a3a"},
+    {file = "PyYAML-6.0-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:d4b0ba9512519522b118090257be113b9468d804b19d63c71dbcf4a48fa32358"},
+    {file = "PyYAML-6.0-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:81957921f441d50af23654aa6c5e5eaf9b06aba7f0a19c18a538dc7ef291c5a1"},
+    {file = "PyYAML-6.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:afa17f5bc4d1b10afd4466fd3a44dc0e245382deca5b3c353d8b757f9e3ecb8d"},
+    {file = "PyYAML-6.0-cp311-cp311-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:dbad0e9d368bb989f4515da330b88a057617d16b6a8245084f1b05400f24609f"},
+    {file = "PyYAML-6.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:432557aa2c09802be39460360ddffd48156e30721f5e8d917f01d31694216782"},
+    {file = "PyYAML-6.0-cp311-cp311-win32.whl", hash = "sha256:bfaef573a63ba8923503d27530362590ff4f576c626d86a9fed95822a8255fd7"},
+    {file = "PyYAML-6.0-cp311-cp311-win_amd64.whl", hash = "sha256:01b45c0191e6d66c470b6cf1b9531a771a83c1c4208272ead47a3ae4f2f603bf"},
     {file = "PyYAML-6.0-cp36-cp36m-macosx_10_9_x86_64.whl", hash = "sha256:897b80890765f037df3403d22bab41627ca8811ae55e9a722fd0392850ec4d86"},
     {file = "PyYAML-6.0-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:50602afada6d6cbfad699b0c7bb50d5ccffa7e46a3d738092afddc1f9758427f"},
     {file = "PyYAML-6.0-cp36-cp36m-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:48c346915c114f5fdb3ead70312bd042a953a8ce5c7106d5bfb1a5254e47da92"},
@@ -2720,8 +2742,8 @@ typed-ast = [
     {file = "typed_ast-1.5.2.tar.gz", hash = "sha256:525a2d4088e70a9f75b08b3f87a51acc9cde640e19cc523c7e41aa355564ae27"},
 ]
 types-bleach = [
-    {file = "types-bleach-4.1.4.tar.gz", hash = "sha256:2d30c2c4fb6854088ac636471352c9a51bf6c089289800d2a8060820a01cd43a"},
-    {file = "types_bleach-4.1.4-py3-none-any.whl", hash = "sha256:edffe173ed6d7b6f3543036a96204a9319c3bf6c3645917b14274e43f000cc9b"},
+    {file = "types-bleach-5.0.3.tar.gz", hash = "sha256:f7b3df8278efe176d9670d0f063a66c866c77577f71f54b9c7a320e31b1a7bbd"},
+    {file = "types_bleach-5.0.3-py3-none-any.whl", hash = "sha256:5931525d03571f36b2bb40210c34b662c4d26c8fd6f2b1e1e83fe4d2d2fd63c7"},
 ]
 types-commonmark = [
     {file = "types-commonmark-0.9.2.tar.gz", hash = "sha256:b894b67750c52fd5abc9a40a9ceb9da4652a391d75c1b480bba9cef90f19fc86"},
@@ -2748,36 +2770,36 @@ types-opentracing = [
     {file = "types_opentracing-2.4.7-py3-none-any.whl", hash = "sha256:861fb8103b07cf717f501dd400cb274ca9992552314d4d6c7a824b11a215e512"},
 ]
 types-pillow = [
-    {file = "types-Pillow-9.0.15.tar.gz", hash = "sha256:d2e385fe5c192e75970f18accce69f5c2a9f186f3feb578a9b91cd6fdf64211d"},
-    {file = "types_Pillow-9.0.15-py3-none-any.whl", hash = "sha256:c9646595dfafdf8b63d4b1443292ead17ee0fc7b18a143e497b68e0ea2dc1eb6"},
+    {file = "types-Pillow-9.2.2.1.tar.gz", hash = "sha256:85c139e06e1c46ec5f9c634d5c54a156b0958d5d0e8be024ed353db0c804b426"},
+    {file = "types_Pillow-9.2.2.1-py3-none-any.whl", hash = "sha256:3a6a871cade8428433a21ef459bb0a65532b87d05f9e836a0664431ce445bdcf"},
 ]
 types-psycopg2 = [
-    {file = "types-psycopg2-2.9.9.tar.gz", hash = "sha256:4f9d4d52eeb343dc00fd5ed4f1513a8a5c18efba0a072eb82706d15cf4f20a2e"},
-    {file = "types_psycopg2-2.9.9-py3-none-any.whl", hash = "sha256:cec9291d4318ad70b407310f8304b3d40f6d0358f09870448f7a65e3027c80af"},
+    {file = "types-psycopg2-2.9.21.1.tar.gz", hash = "sha256:f5532cf15afdc6b5ebb1e59b7d896617217321f488fd1fbd74e7efb94decfab6"},
+    {file = "types_psycopg2-2.9.21.1-py3-none-any.whl", hash = "sha256:858838f1972f39da2a6e28274201fed8619a40a235dd86e7f66f4548ec474395"},
 ]
-types-pyopenssl = [
-    {file = "types-pyOpenSSL-22.0.0.tar.gz", hash = "sha256:d86dde7f6fe2f1ac9fe0b6282e489f649f480364bdaa9d6a4696d52505f4477e"},
-    {file = "types_pyOpenSSL-22.0.0-py3-none-any.whl", hash = "sha256:da685f57b864979f36df0157895139c8244ad4aad19b551f1678206fbad0108a"},
+types-pyOpenSSL = [
+    {file = "types-pyOpenSSL-22.0.10.tar.gz", hash = "sha256:f943b834f5b97e5e808764c2f6e37be1a2e226c46792296f61558196acfcc3a1"},
+    {file = "types_pyOpenSSL-22.0.10-py3-none-any.whl", hash = "sha256:63baea211768bea580a769ac5c0d637ae8cd3150314aadc5726ca22e4c4f241a"},
 ]
-types-pyyaml = [
-    {file = "types-PyYAML-6.0.4.tar.gz", hash = "sha256:6252f62d785e730e454dfa0c9f0fb99d8dae254c5c3c686903cf878ea27c04b7"},
-    {file = "types_PyYAML-6.0.4-py3-none-any.whl", hash = "sha256:693b01c713464a6851f36ff41077f8adbc6e355eda929addfb4a97208aea9b4b"},
+types-PyYAML = [
+    {file = "types-PyYAML-6.0.12.tar.gz", hash = "sha256:f6f350418125872f3f0409d96a62a5a5ceb45231af5cc07ee0034ec48a3c82fa"},
+    {file = "types_PyYAML-6.0.12-py3-none-any.whl", hash = "sha256:29228db9f82df4f1b7febee06bbfb601677882e98a3da98132e31c6874163e15"},
 ]
 types-requests = [
-    {file = "types-requests-2.27.11.tar.gz", hash = "sha256:6a7ed24b21780af4a5b5e24c310b2cd885fb612df5fd95584d03d87e5f2a195a"},
-    {file = "types_requests-2.27.11-py3-none-any.whl", hash = "sha256:506279bad570c7b4b19ac1f22e50146538befbe0c133b2cea66a9b04a533a859"},
+    {file = "types-requests-2.28.11.tar.gz", hash = "sha256:7ee827eb8ce611b02b5117cfec5da6455365b6a575f5e3ff19f655ba603e6b4e"},
+    {file = "types_requests-2.28.11-py3-none-any.whl", hash = "sha256:af5f55e803cabcfb836dad752bd6d8a0fc8ef1cd84243061c0e27dee04ccf4fd"},
 ]
 types-setuptools = [
-    {file = "types-setuptools-57.4.9.tar.gz", hash = "sha256:536ef74744f8e1e4be4fc719887f886e74e4cf3c792b4a06984320be4df450b5"},
-    {file = "types_setuptools-57.4.9-py3-none-any.whl", hash = "sha256:948dc6863373750e2cd0b223a84f1fb608414cde5e55cf38ea657b93aeb411d2"},
+    {file = "types-setuptools-65.4.0.0.tar.gz", hash = "sha256:d9021d6a70690b34e7bd2947e7ab10167c646fbf062508cb56581be2e2a1615e"},
+    {file = "types_setuptools-65.4.0.0-py3-none-any.whl", hash = "sha256:ce178b3f7dbd6c0e67f8eee7ae29c1be280ade7e5188bdd9e620843de4060d85"},
 ]
 types-urllib3 = [
     {file = "types-urllib3-1.26.10.tar.gz", hash = "sha256:a26898f530e6c3f43f25b907f2b884486868ffd56a9faa94cbf9b3eb6e165d6a"},
     {file = "types_urllib3-1.26.10-py3-none-any.whl", hash = "sha256:d755278d5ecd7a7a6479a190e54230f241f1a99c19b81518b756b19dc69e518c"},
 ]
 typing-extensions = [
-    {file = "typing_extensions-4.1.1-py3-none-any.whl", hash = "sha256:21c85e0fe4b9a155d0799430b0ad741cdce7e359660ccbd8b530613e8df88ce2"},
-    {file = "typing_extensions-4.1.1.tar.gz", hash = "sha256:1a9462dcc3347a79b1f1c0271fbe79e844580bb598bafa1ed208b94da3cdcd42"},
+    {file = "typing_extensions-4.4.0-py3-none-any.whl", hash = "sha256:16fa4864408f655d35ec496218b85f79b3437c829e93320c7c9215ccfd92489e"},
+    {file = "typing_extensions-4.4.0.tar.gz", hash = "sha256:1511434bb92bf8dd198c12b1cc812e800d4181cfcb867674e0f8279cc93087aa"},
 ]
 unpaddedbase64 = [
     {file = "unpaddedbase64-2.1.0-py3-none-any.whl", hash = "sha256:485eff129c30175d2cd6f0cd8d2310dff51e666f7f36175f738d75dfdbd0b1c6"},
diff --git a/pyproject.toml b/pyproject.toml
index 0b1eab634e..7fbbc08915 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -57,7 +57,7 @@ manifest-path = "rust/Cargo.toml"
 
 [tool.poetry]
 name = "matrix-synapse"
-version = "1.69.0rc3"
+version = "1.69.0"
 description = "Homeserver for the Matrix decentralised comms protocol"
 authors = ["Matrix.org Team and Contributors <packages@matrix.org>"]
 license = "Apache-2.0"
@@ -267,7 +267,7 @@ all = [
 
 [tool.poetry.dev-dependencies]
 ## We pin black so that our tests don't start failing on new releases.
-isort = "==5.7.0"
+isort = "==5.10.1"
 black = "==22.3.0"
 flake8-comprehensions = "*"
 flake8-bugbear = "==21.3.2"
@@ -296,7 +296,7 @@ parameterized = ">=0.7.4"
 idna = ">=2.5"
 
 # The following are used by the release script
-click = "==8.1.1"
+click = "==8.1.3"
 # GitPython was == 3.1.14; bumped to 3.1.20, the first release with type hints.
 GitPython = ">=3.1.20"
 commonmark = "==0.9.1"
@@ -312,7 +312,7 @@ towncrier = ">=18.6.0rc1"
 # system changes.
 # We are happy to raise these upper bounds upon request,
 # provided we check that it's safe to do so (i.e. that CI passes).
-requires = ["poetry-core>=1.0.0,<=1.3.1", "setuptools_rust>=1.3,<=1.5.2"]
+requires = ["poetry-core>=1.0.0,<=1.3.2", "setuptools_rust>=1.3,<=1.5.2"]
 build-backend = "poetry.core.masonry.api"
 
 
@@ -321,7 +321,7 @@ build-backend = "poetry.core.masonry.api"
 skip = "cp36* *-musllinux_i686"
 
 # We need a rust compiler
-before-all =  "curl https://sh.rustup.rs -sSf | sh -s -- --default-toolchain stable -y"
+before-all =  "curl https://sh.rustup.rs -sSf | sh -s -- --default-toolchain stable -y --profile minimal"
 environment= { PATH = "$PATH:$HOME/.cargo/bin" }
 
 # For some reason if we don't manually clean the build directory we
diff --git a/rust/src/push/base_rules.rs b/rust/src/push/base_rules.rs
index bb59676bde..63240cacfc 100644
--- a/rust/src/push/base_rules.rs
+++ b/rust/src/push/base_rules.rs
@@ -173,7 +173,7 @@ pub const BASE_APPEND_OVERRIDE_RULES: &[PushRule] = &[
         default_enabled: true,
     },
     PushRule {
-        rule_id: Cow::Borrowed("global/override/.org.matrix.msc3786.rule.room.server_acl"),
+        rule_id: Cow::Borrowed("global/override/.m.rule.room.server_acl"),
         priority_class: 5,
         conditions: Cow::Borrowed(&[
             Condition::Known(KnownCondition::EventMatch(EventMatchCondition {
@@ -258,19 +258,6 @@ pub const BASE_APPEND_UNDERRIDE_RULES: &[PushRule] = &[
         default_enabled: true,
     },
     PushRule {
-        rule_id: Cow::Borrowed("global/underride/.org.matrix.msc3772.thread_reply"),
-        priority_class: 1,
-        conditions: Cow::Borrowed(&[Condition::Known(KnownCondition::RelationMatch {
-            rel_type: Cow::Borrowed("m.thread"),
-            event_type_pattern: None,
-            sender: None,
-            sender_type: Some(Cow::Borrowed("user_id")),
-        })]),
-        actions: Cow::Borrowed(&[Action::Notify, HIGHLIGHT_FALSE_ACTION]),
-        default: true,
-        default_enabled: true,
-    },
-    PushRule {
         rule_id: Cow::Borrowed("global/underride/.m.rule.message"),
         priority_class: 1,
         conditions: Cow::Borrowed(&[Condition::Known(KnownCondition::EventMatch(
diff --git a/rust/src/push/evaluator.rs b/rust/src/push/evaluator.rs
index efe88ec76e..0365dd01dc 100644
--- a/rust/src/push/evaluator.rs
+++ b/rust/src/push/evaluator.rs
@@ -12,10 +12,7 @@
 // See the License for the specific language governing permissions and
 // limitations under the License.
 
-use std::{
-    borrow::Cow,
-    collections::{BTreeMap, BTreeSet},
-};
+use std::collections::BTreeMap;
 
 use anyhow::{Context, Error};
 use lazy_static::lazy_static;
@@ -49,13 +46,6 @@ pub struct PushRuleEvaluator {
     /// The `notifications` section of the current power levels in the room.
     notification_power_levels: BTreeMap<String, i64>,
 
-    /// The relations related to the event as a mapping from relation type to
-    /// set of sender/event type 2-tuples.
-    relations: BTreeMap<String, BTreeSet<(String, String)>>,
-
-    /// Is running "relation" conditions enabled?
-    relation_match_enabled: bool,
-
     /// The power level of the sender of the event, or None if event is an
     /// outlier.
     sender_power_level: Option<i64>,
@@ -70,8 +60,6 @@ impl PushRuleEvaluator {
         room_member_count: u64,
         sender_power_level: Option<i64>,
         notification_power_levels: BTreeMap<String, i64>,
-        relations: BTreeMap<String, BTreeSet<(String, String)>>,
-        relation_match_enabled: bool,
     ) -> Result<Self, Error> {
         let body = flattened_keys
             .get("content.body")
@@ -83,8 +71,6 @@ impl PushRuleEvaluator {
             body,
             room_member_count,
             notification_power_levels,
-            relations,
-            relation_match_enabled,
             sender_power_level,
         })
     }
@@ -203,89 +189,11 @@ impl PushRuleEvaluator {
                     false
                 }
             }
-            KnownCondition::RelationMatch {
-                rel_type,
-                event_type_pattern,
-                sender,
-                sender_type,
-            } => {
-                self.match_relations(rel_type, sender, sender_type, user_id, event_type_pattern)?
-            }
         };
 
         Ok(result)
     }
 
-    /// Evaluates a relation condition.
-    fn match_relations(
-        &self,
-        rel_type: &str,
-        sender: &Option<Cow<str>>,
-        sender_type: &Option<Cow<str>>,
-        user_id: Option<&str>,
-        event_type_pattern: &Option<Cow<str>>,
-    ) -> Result<bool, Error> {
-        // First check if relation matching is enabled...
-        if !self.relation_match_enabled {
-            return Ok(false);
-        }
-
-        // ... and if there are any relations to match against.
-        let relations = if let Some(relations) = self.relations.get(rel_type) {
-            relations
-        } else {
-            return Ok(false);
-        };
-
-        // Extract the sender pattern from the condition
-        let sender_pattern = if let Some(sender) = sender {
-            Some(sender.as_ref())
-        } else if let Some(sender_type) = sender_type {
-            if sender_type == "user_id" {
-                if let Some(user_id) = user_id {
-                    Some(user_id)
-                } else {
-                    return Ok(false);
-                }
-            } else {
-                warn!("Unrecognized sender_type: {sender_type}");
-                return Ok(false);
-            }
-        } else {
-            None
-        };
-
-        let mut sender_compiled_pattern = if let Some(pattern) = sender_pattern {
-            Some(get_glob_matcher(pattern, GlobMatchType::Whole)?)
-        } else {
-            None
-        };
-
-        let mut type_compiled_pattern = if let Some(pattern) = event_type_pattern {
-            Some(get_glob_matcher(pattern, GlobMatchType::Whole)?)
-        } else {
-            None
-        };
-
-        for (relation_sender, event_type) in relations {
-            if let Some(pattern) = &mut sender_compiled_pattern {
-                if !pattern.is_match(relation_sender)? {
-                    continue;
-                }
-            }
-
-            if let Some(pattern) = &mut type_compiled_pattern {
-                if !pattern.is_match(event_type)? {
-                    continue;
-                }
-            }
-
-            return Ok(true);
-        }
-
-        Ok(false)
-    }
-
     /// Evaluates a `event_match` condition.
     fn match_event_match(
         &self,
@@ -359,15 +267,8 @@ impl PushRuleEvaluator {
 fn push_rule_evaluator() {
     let mut flattened_keys = BTreeMap::new();
     flattened_keys.insert("content.body".to_string(), "foo bar bob hello".to_string());
-    let evaluator = PushRuleEvaluator::py_new(
-        flattened_keys,
-        10,
-        Some(0),
-        BTreeMap::new(),
-        BTreeMap::new(),
-        true,
-    )
-    .unwrap();
+    let evaluator =
+        PushRuleEvaluator::py_new(flattened_keys, 10, Some(0), BTreeMap::new()).unwrap();
 
     let result = evaluator.run(&FilteredPushRules::default(), None, Some("bob"));
     assert_eq!(result.len(), 3);
diff --git a/rust/src/push/mod.rs b/rust/src/push/mod.rs
index 30fffc31ad..0dabfab8b8 100644
--- a/rust/src/push/mod.rs
+++ b/rust/src/push/mod.rs
@@ -275,16 +275,6 @@ pub enum KnownCondition {
     SenderNotificationPermission {
         key: Cow<'static, str>,
     },
-    #[serde(rename = "org.matrix.msc3772.relation_match")]
-    RelationMatch {
-        rel_type: Cow<'static, str>,
-        #[serde(skip_serializing_if = "Option::is_none", rename = "type")]
-        event_type_pattern: Option<Cow<'static, str>>,
-        #[serde(skip_serializing_if = "Option::is_none")]
-        sender: Option<Cow<'static, str>>,
-        #[serde(skip_serializing_if = "Option::is_none")]
-        sender_type: Option<Cow<'static, str>>,
-    },
 }
 
 impl IntoPy<PyObject> for Condition {
@@ -401,24 +391,15 @@ impl PushRules {
 pub struct FilteredPushRules {
     push_rules: PushRules,
     enabled_map: BTreeMap<String, bool>,
-    msc3786_enabled: bool,
-    msc3772_enabled: bool,
 }
 
 #[pymethods]
 impl FilteredPushRules {
     #[new]
-    pub fn py_new(
-        push_rules: PushRules,
-        enabled_map: BTreeMap<String, bool>,
-        msc3786_enabled: bool,
-        msc3772_enabled: bool,
-    ) -> Self {
+    pub fn py_new(push_rules: PushRules, enabled_map: BTreeMap<String, bool>) -> Self {
         Self {
             push_rules,
             enabled_map,
-            msc3786_enabled,
-            msc3772_enabled,
         }
     }
 
@@ -433,31 +414,13 @@ impl FilteredPushRules {
     /// Iterates over all the rules and their enabled state, including base
     /// rules, in the order they should be executed in.
     fn iter(&self) -> impl Iterator<Item = (&PushRule, bool)> {
-        self.push_rules
-            .iter()
-            .filter(|rule| {
-                // Ignore disabled experimental push rules
-                if !self.msc3786_enabled
-                    && rule.rule_id == "global/override/.org.matrix.msc3786.rule.room.server_acl"
-                {
-                    return false;
-                }
-
-                if !self.msc3772_enabled
-                    && rule.rule_id == "global/underride/.org.matrix.msc3772.thread_reply"
-                {
-                    return false;
-                }
-
-                true
-            })
-            .map(|r| {
-                let enabled = *self
-                    .enabled_map
-                    .get(&*r.rule_id)
-                    .unwrap_or(&r.default_enabled);
-                (r, enabled)
-            })
+        self.push_rules.iter().map(|r| {
+            let enabled = *self
+                .enabled_map
+                .get(&*r.rule_id)
+                .unwrap_or(&r.default_enabled);
+            (r, enabled)
+        })
     }
 }
 
diff --git a/scripts-dev/complement.sh b/scripts-dev/complement.sh
index eab23f18f1..a7b1e1e3a8 100755
--- a/scripts-dev/complement.sh
+++ b/scripts-dev/complement.sh
@@ -126,7 +126,7 @@ export COMPLEMENT_BASE_IMAGE=complement-synapse
 
 extra_test_args=()
 
-test_tags="synapse_blacklist,msc2716,msc3030,msc3787"
+test_tags="synapse_blacklist,msc3787"
 
 # All environment variables starting with PASS_ will be shared.
 # (The prefix is stripped off before reaching the container.)
@@ -158,7 +158,10 @@ else
 
   # We only test faster room joins on monoliths, because they are purposefully
   # being developed without worker support to start with.
-  test_tags="$test_tags,faster_joins"
+  #
+  # The tests for importing historical messages (MSC2716) and jump to date (MSC3030)
+  # also only pass with monoliths, currently.
+  test_tags="$test_tags,faster_joins,msc2716,msc3030"
 fi
 
 
diff --git a/stubs/synapse/synapse_rust/push.pyi b/stubs/synapse/synapse_rust/push.pyi
index fffb8419c6..f2a61df660 100644
--- a/stubs/synapse/synapse_rust/push.pyi
+++ b/stubs/synapse/synapse_rust/push.pyi
@@ -25,13 +25,7 @@ class PushRules:
     def rules(self) -> Collection[PushRule]: ...
 
 class FilteredPushRules:
-    def __init__(
-        self,
-        push_rules: PushRules,
-        enabled_map: Dict[str, bool],
-        msc3786_enabled: bool,
-        msc3772_enabled: bool,
-    ): ...
+    def __init__(self, push_rules: PushRules, enabled_map: Dict[str, bool]): ...
     def rules(self) -> Collection[Tuple[PushRule, bool]]: ...
 
 def get_base_rule_ids() -> Collection[str]: ...
@@ -43,8 +37,6 @@ class PushRuleEvaluator:
         room_member_count: int,
         sender_power_level: Optional[int],
         notification_power_levels: Mapping[str, int],
-        relations: Mapping[str, Set[Tuple[str, str]]],
-        relation_match_enabled: bool,
     ): ...
     def run(
         self,
diff --git a/synapse/__init__.py b/synapse/__init__.py
index 1bed6393bd..fbfd506a43 100644
--- a/synapse/__init__.py
+++ b/synapse/__init__.py
@@ -21,6 +21,7 @@ import os
 import sys
 
 from synapse.util.rust import check_rust_lib_up_to_date
+from synapse.util.stringutils import strtobool
 
 # Check that we're not running on an unsupported Python version.
 if sys.version_info < (3, 7):
@@ -28,25 +29,22 @@ if sys.version_info < (3, 7):
     sys.exit(1)
 
 # Allow using the asyncio reactor via env var.
-if bool(os.environ.get("SYNAPSE_ASYNC_IO_REACTOR", False)):
-    try:
-        from incremental import Version
+if strtobool(os.environ.get("SYNAPSE_ASYNC_IO_REACTOR", "0")):
+    from incremental import Version
 
-        import twisted
+    import twisted
 
-        # We need a bugfix that is included in Twisted 21.2.0:
-        # https://twistedmatrix.com/trac/ticket/9787
-        if twisted.version < Version("Twisted", 21, 2, 0):
-            print("Using asyncio reactor requires Twisted>=21.2.0")
-            sys.exit(1)
+    # We need a bugfix that is included in Twisted 21.2.0:
+    # https://twistedmatrix.com/trac/ticket/9787
+    if twisted.version < Version("Twisted", 21, 2, 0):
+        print("Using asyncio reactor requires Twisted>=21.2.0")
+        sys.exit(1)
 
-        import asyncio
+    import asyncio
 
-        from twisted.internet import asyncioreactor
+    from twisted.internet import asyncioreactor
 
-        asyncioreactor.install(asyncio.get_event_loop())
-    except ImportError:
-        pass
+    asyncioreactor.install(asyncio.get_event_loop())
 
 # Twisted and canonicaljson will fail to import when this file is executed to
 # get the __version__ during a fresh install. That's OK and subsequent calls to
diff --git a/synapse/_scripts/synapse_port_db.py b/synapse/_scripts/synapse_port_db.py
index 5fa599e70e..d850e54e17 100755
--- a/synapse/_scripts/synapse_port_db.py
+++ b/synapse/_scripts/synapse_port_db.py
@@ -72,6 +72,7 @@ from synapse.storage.databases.main.registration import (
     RegistrationBackgroundUpdateStore,
     find_max_generated_user_id_localpart,
 )
+from synapse.storage.databases.main.relations import RelationsWorkerStore
 from synapse.storage.databases.main.room import RoomBackgroundUpdateStore
 from synapse.storage.databases.main.roommember import RoomMemberBackgroundUpdateStore
 from synapse.storage.databases.main.search import SearchBackgroundUpdateStore
@@ -206,6 +207,7 @@ class Store(
     PusherWorkerStore,
     PresenceBackgroundUpdateStore,
     ReceiptsBackgroundUpdateStore,
+    RelationsWorkerStore,
 ):
     def execute(self, f: Callable[..., R], *args: Any, **kwargs: Any) -> Awaitable[R]:
         return self.db_pool.runInteraction(f.__name__, f, *args, **kwargs)
diff --git a/synapse/api/constants.py b/synapse/api/constants.py
index c031903b1a..44c5ffc6a5 100644
--- a/synapse/api/constants.py
+++ b/synapse/api/constants.py
@@ -31,6 +31,9 @@ MAX_ALIAS_LENGTH = 255
 # the maximum length for a user id is 255 characters
 MAX_USERID_LENGTH = 255
 
+# Constant value used for the pseudo-thread which is the main timeline.
+MAIN_TIMELINE: Final = "main"
+
 
 class Membership:
 
diff --git a/synapse/api/errors.py b/synapse/api/errors.py
index c606207569..e0873b1913 100644
--- a/synapse/api/errors.py
+++ b/synapse/api/errors.py
@@ -640,6 +640,27 @@ class FederationError(RuntimeError):
         }
 
 
+class FederationPullAttemptBackoffError(RuntimeError):
+    """
+    Raised to indicate that we are are deliberately not attempting to pull the given
+    event over federation because we've already done so recently and are backing off.
+
+    Attributes:
+        event_id: The event_id which we are refusing to pull
+        message: A custom error message that gives more context
+    """
+
+    def __init__(self, event_ids: List[str], message: Optional[str]):
+        self.event_ids = event_ids
+
+        if message:
+            error_message = message
+        else:
+            error_message = f"Not attempting to pull event_ids={self.event_ids} because we already tried to pull them recently (backing off)."
+
+        super().__init__(error_message)
+
+
 class HttpResponseException(CodeMessageException):
     """
     Represents an HTTP-level failure of an outbound request
diff --git a/synapse/api/filtering.py b/synapse/api/filtering.py
index f7f46f8d80..26be377d03 100644
--- a/synapse/api/filtering.py
+++ b/synapse/api/filtering.py
@@ -36,7 +36,7 @@ from jsonschema import FormatChecker
 from synapse.api.constants import EduTypes, EventContentFields
 from synapse.api.errors import SynapseError
 from synapse.api.presence import UserPresenceState
-from synapse.events import EventBase
+from synapse.events import EventBase, relation_from_event
 from synapse.types import JsonDict, RoomID, UserID
 
 if TYPE_CHECKING:
@@ -53,6 +53,12 @@ FILTER_SCHEMA = {
         # check types are valid event types
         "types": {"type": "array", "items": {"type": "string"}},
         "not_types": {"type": "array", "items": {"type": "string"}},
+        # MSC3874, filtering /messages.
+        "org.matrix.msc3874.rel_types": {"type": "array", "items": {"type": "string"}},
+        "org.matrix.msc3874.not_rel_types": {
+            "type": "array",
+            "items": {"type": "string"},
+        },
     },
 }
 
@@ -84,6 +90,8 @@ ROOM_EVENT_FILTER_SCHEMA = {
         "contains_url": {"type": "boolean"},
         "lazy_load_members": {"type": "boolean"},
         "include_redundant_members": {"type": "boolean"},
+        "unread_thread_notifications": {"type": "boolean"},
+        "org.matrix.msc3773.unread_thread_notifications": {"type": "boolean"},
         # Include or exclude events with the provided labels.
         # cf https://github.com/matrix-org/matrix-doc/pull/2326
         "org.matrix.labels": {"type": "array", "items": {"type": "string"}},
@@ -240,6 +248,9 @@ class FilterCollection:
     def include_redundant_members(self) -> bool:
         return self._room_state_filter.include_redundant_members
 
+    def unread_thread_notifications(self) -> bool:
+        return self._room_timeline_filter.unread_thread_notifications
+
     async def filter_presence(
         self, events: Iterable[UserPresenceState]
     ) -> List[UserPresenceState]:
@@ -304,6 +315,16 @@ class Filter:
         self.include_redundant_members = filter_json.get(
             "include_redundant_members", False
         )
+        self.unread_thread_notifications: bool = filter_json.get(
+            "unread_thread_notifications", False
+        )
+        if (
+            not self.unread_thread_notifications
+            and hs.config.experimental.msc3773_enabled
+        ):
+            self.unread_thread_notifications = filter_json.get(
+                "org.matrix.msc3773.unread_thread_notifications", False
+            )
 
         self.types = filter_json.get("types", None)
         self.not_types = filter_json.get("not_types", [])
@@ -319,8 +340,15 @@ class Filter:
         self.labels = filter_json.get("org.matrix.labels", None)
         self.not_labels = filter_json.get("org.matrix.not_labels", [])
 
-        self.related_by_senders = self.filter_json.get("related_by_senders", None)
-        self.related_by_rel_types = self.filter_json.get("related_by_rel_types", None)
+        self.related_by_senders = filter_json.get("related_by_senders", None)
+        self.related_by_rel_types = filter_json.get("related_by_rel_types", None)
+
+        # For compatibility with _check_fields.
+        self.rel_types = None
+        self.not_rel_types = []
+        if hs.config.experimental.msc3874_enabled:
+            self.rel_types = filter_json.get("org.matrix.msc3874.rel_types", None)
+            self.not_rel_types = filter_json.get("org.matrix.msc3874.not_rel_types", [])
 
     def filters_all_types(self) -> bool:
         return "*" in self.not_types
@@ -371,11 +399,19 @@ class Filter:
             # check if there is a string url field in the content for filtering purposes
             labels = content.get(EventContentFields.LABELS, [])
 
+            # Check if the event has a relation.
+            rel_type = None
+            if isinstance(event, EventBase):
+                relation = relation_from_event(event)
+                if relation:
+                    rel_type = relation.rel_type
+
             field_matchers = {
                 "rooms": lambda v: room_id == v,
                 "senders": lambda v: sender == v,
                 "types": lambda v: _matches_wildcard(ev_type, v),
                 "labels": lambda v: v in labels,
+                "rel_types": lambda v: rel_type == v,
             }
 
             result = self._check_fields(field_matchers)
diff --git a/synapse/app/generic_worker.py b/synapse/app/generic_worker.py
index 5e3825fca6..dc49840f73 100644
--- a/synapse/app/generic_worker.py
+++ b/synapse/app/generic_worker.py
@@ -65,6 +65,7 @@ from synapse.rest.client import (
     push_rule,
     read_marker,
     receipts,
+    relations,
     room,
     room_batch,
     room_keys,
@@ -308,6 +309,7 @@ class GenericWorkerServer(HomeServer):
                     sync.register_servlets(self, resource)
                     events.register_servlets(self, resource)
                     room.register_servlets(self, resource, is_worker=True)
+                    relations.register_servlets(self, resource)
                     room.register_deprecated_servlets(self, resource)
                     initial_sync.register_servlets(self, resource)
                     room_batch.register_servlets(self, resource)
diff --git a/synapse/appservice/api.py b/synapse/appservice/api.py
index 0963fb3bb4..fbac4375b0 100644
--- a/synapse/appservice/api.py
+++ b/synapse/appservice/api.py
@@ -120,7 +120,11 @@ class ApplicationServiceApi(SimpleHttpClient):
 
         uri = service.url + ("/users/%s" % urllib.parse.quote(user_id))
         try:
-            response = await self.get_json(uri, {"access_token": service.hs_token})
+            response = await self.get_json(
+                uri,
+                {"access_token": service.hs_token},
+                headers={"Authorization": f"Bearer {service.hs_token}"},
+            )
             if response is not None:  # just an empty json object
                 return True
         except CodeMessageException as e:
@@ -140,7 +144,11 @@ class ApplicationServiceApi(SimpleHttpClient):
 
         uri = service.url + ("/rooms/%s" % urllib.parse.quote(alias))
         try:
-            response = await self.get_json(uri, {"access_token": service.hs_token})
+            response = await self.get_json(
+                uri,
+                {"access_token": service.hs_token},
+                headers={"Authorization": f"Bearer {service.hs_token}"},
+            )
             if response is not None:  # just an empty json object
                 return True
         except CodeMessageException as e:
@@ -181,7 +189,9 @@ class ApplicationServiceApi(SimpleHttpClient):
                 **fields,
                 b"access_token": service.hs_token,
             }
-            response = await self.get_json(uri, args=args)
+            response = await self.get_json(
+                uri, args=args, headers={"Authorization": f"Bearer {service.hs_token}"}
+            )
             if not isinstance(response, list):
                 logger.warning(
                     "query_3pe to %s returned an invalid response %r", uri, response
@@ -217,7 +227,11 @@ class ApplicationServiceApi(SimpleHttpClient):
                 urllib.parse.quote(protocol),
             )
             try:
-                info = await self.get_json(uri, {"access_token": service.hs_token})
+                info = await self.get_json(
+                    uri,
+                    {"access_token": service.hs_token},
+                    headers={"Authorization": f"Bearer {service.hs_token}"},
+                )
 
                 if not _is_valid_3pe_metadata(info):
                     logger.warning(
@@ -313,6 +327,7 @@ class ApplicationServiceApi(SimpleHttpClient):
                 uri=uri,
                 json_body=body,
                 args={"access_token": service.hs_token},
+                headers={"Authorization": f"Bearer {service.hs_token}"},
             )
             if logger.isEnabledFor(logging.DEBUG):
                 logger.debug(
diff --git a/synapse/config/experimental.py b/synapse/config/experimental.py
index 31834fb27d..f9a49451d8 100644
--- a/synapse/config/experimental.py
+++ b/synapse/config/experimental.py
@@ -95,16 +95,8 @@ class ExperimentalConfig(Config):
         # MSC2815 (allow room moderators to view redacted event content)
         self.msc2815_enabled: bool = experimental.get("msc2815_enabled", False)
 
-        # MSC3786 (Add a default push rule to ignore m.room.server_acl events)
-        self.msc3786_enabled: bool = experimental.get("msc3786_enabled", False)
-
-        # MSC3771: Thread read receipts
-        self.msc3771_enabled: bool = experimental.get("msc3771_enabled", False)
-        # MSC3772: A push rule for mutual relations.
-        self.msc3772_enabled: bool = experimental.get("msc3772_enabled", False)
-
-        # MSC3715: dir param on /relations.
-        self.msc3715_enabled: bool = experimental.get("msc3715_enabled", False)
+        # MSC3773: Thread notifications
+        self.msc3773_enabled: bool = experimental.get("msc3773_enabled", False)
 
         # MSC3848: Introduce errcodes for specific event sending failures
         self.msc3848_enabled: bool = experimental.get("msc3848_enabled", False)
@@ -125,3 +117,6 @@ class ExperimentalConfig(Config):
         self.msc3882_token_timeout = self.parse_duration(
             experimental.get("msc3882_token_timeout", "5m")
         )
+
+        # MSC3874: Filtering /messages with rel_types / not_rel_types.
+        self.msc3874_enabled: bool = experimental.get("msc3874_enabled", False)
diff --git a/synapse/config/groups.py b/synapse/config/groups.py
deleted file mode 100644
index baa051fdd4..0000000000
--- a/synapse/config/groups.py
+++ /dev/null
@@ -1,27 +0,0 @@
-# Copyright 2017 New Vector Ltd
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-#     http://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-
-from typing import Any
-
-from synapse.types import JsonDict
-
-from ._base import Config
-
-
-class GroupsConfig(Config):
-    section = "groups"
-
-    def read_config(self, config: JsonDict, **kwargs: Any) -> None:
-        self.enable_group_creation = config.get("enable_group_creation", False)
-        self.group_creation_prefix = config.get("group_creation_prefix", "")
diff --git a/synapse/config/logger.py b/synapse/config/logger.py
index 6c1f78f8df..b62b3b9205 100644
--- a/synapse/config/logger.py
+++ b/synapse/config/logger.py
@@ -326,6 +326,8 @@ def setup_logging(
         logBeginner: The Twisted logBeginner to use.
 
     """
+    from twisted.internet import reactor
+
     log_config_path = (
         config.worker.worker_log_config
         if use_worker_options
@@ -348,3 +350,4 @@ def setup_logging(
     )
     logging.info("Server hostname: %s", config.server.server_name)
     logging.info("Instance name: %s", hs.get_instance_name())
+    logging.info("Twisted reactor: %s", type(reactor).__name__)
diff --git a/synapse/federation/federation_client.py b/synapse/federation/federation_client.py
index 4dca711cd2..b220ab43fc 100644
--- a/synapse/federation/federation_client.py
+++ b/synapse/federation/federation_client.py
@@ -1294,7 +1294,7 @@ class FederationClient(FederationBase):
         return resp[1]
 
     async def send_knock(self, destinations: List[str], pdu: EventBase) -> JsonDict:
-        """Attempts to send a knock event to given a list of servers. Iterates
+        """Attempts to send a knock event to a given list of servers. Iterates
         through the list until one attempt succeeds.
 
         Doing so will cause the remote server to add the event to the graph,
diff --git a/synapse/federation/federation_server.py b/synapse/federation/federation_server.py
index 907940e19e..28097664b4 100644
--- a/synapse/federation/federation_server.py
+++ b/synapse/federation/federation_server.py
@@ -824,7 +824,14 @@ class FederationServer(FederationBase):
                 context, self._room_prejoin_state_types
             )
         )
-        return {"knock_state_events": stripped_room_state}
+        return {
+            "knock_room_state": stripped_room_state,
+            # Since v1.37, Synapse incorrectly used "knock_state_events" for this field.
+            # Thus, we also populate a 'knock_state_events' with the same content to
+            # support old instances.
+            # See https://github.com/matrix-org/synapse/issues/14088.
+            "knock_state_events": stripped_room_state,
+        }
 
     async def _on_send_membership_event(
         self, origin: str, content: JsonDict, membership_type: str, room_id: str
diff --git a/synapse/federation/sender/__init__.py b/synapse/federation/sender/__init__.py
index a6cb3ba58f..774ecd81b6 100644
--- a/synapse/federation/sender/__init__.py
+++ b/synapse/federation/sender/__init__.py
@@ -353,21 +353,25 @@ class FederationSender(AbstractFederationSender):
                 last_token = await self.store.get_federation_out_pos("events")
                 (
                     next_token,
-                    events,
                     event_to_received_ts,
-                ) = await self.store.get_all_new_events_stream(
+                ) = await self.store.get_all_new_event_ids_stream(
                     last_token, self._last_poked_id, limit=100
                 )
 
+                event_ids = event_to_received_ts.keys()
+                event_entries = await self.store.get_unredacted_events_from_cache_or_db(
+                    event_ids
+                )
+
                 logger.debug(
                     "Handling %i -> %i: %i events to send (current id %i)",
                     last_token,
                     next_token,
-                    len(events),
+                    len(event_entries),
                     self._last_poked_id,
                 )
 
-                if not events and next_token >= self._last_poked_id:
+                if not event_entries and next_token >= self._last_poked_id:
                     logger.debug("All events processed")
                     break
 
@@ -508,8 +512,14 @@ class FederationSender(AbstractFederationSender):
                             await handle_event(event)
 
                 events_by_room: Dict[str, List[EventBase]] = {}
-                for event in events:
-                    events_by_room.setdefault(event.room_id, []).append(event)
+
+                for event_id in event_ids:
+                    # `event_entries` is unsorted, so we have to iterate over `event_ids`
+                    # to ensure the events are in the right order
+                    event_cache = event_entries.get(event_id)
+                    if event_cache:
+                        event = event_cache.event
+                        events_by_room.setdefault(event.room_id, []).append(event)
 
                 await make_deferred_yieldable(
                     defer.gatherResults(
@@ -524,9 +534,10 @@ class FederationSender(AbstractFederationSender):
                 logger.debug("Successfully handled up to %i", next_token)
                 await self.store.update_federation_out_pos("events", next_token)
 
-                if events:
+                if event_entries:
                     now = self.clock.time_msec()
-                    ts = event_to_received_ts[events[-1].event_id]
+                    last_id = next(reversed(event_ids))
+                    ts = event_to_received_ts[last_id]
                     assert ts is not None
 
                     synapse.metrics.event_processing_lag.labels(
@@ -536,7 +547,7 @@ class FederationSender(AbstractFederationSender):
                         "federation_sender"
                     ).set(ts)
 
-                    events_processed_counter.inc(len(events))
+                    events_processed_counter.inc(len(event_entries))
 
                     event_processing_loop_room_count.labels("federation_sender").inc(
                         len(events_by_room)
diff --git a/synapse/federation/transport/client.py b/synapse/federation/transport/client.py
index 32074b8ca6..cd39d4d111 100644
--- a/synapse/federation/transport/client.py
+++ b/synapse/federation/transport/client.py
@@ -45,6 +45,7 @@ from synapse.federation.units import Transaction
 from synapse.http.matrixfederationclient import ByteParser
 from synapse.http.types import QueryParams
 from synapse.types import JsonDict
+from synapse.util import ExceptionBundle
 
 logger = logging.getLogger(__name__)
 
@@ -926,8 +927,7 @@ class SendJoinParser(ByteParser[SendJoinResponse]):
         return len(data)
 
     def finish(self) -> SendJoinResponse:
-        for c in self._coros:
-            c.close()
+        _close_coros(self._coros)
 
         if self._response.event_dict:
             self._response.event = make_event_from_dict(
@@ -970,6 +970,27 @@ class _StateParser(ByteParser[StateRequestResponse]):
         return len(data)
 
     def finish(self) -> StateRequestResponse:
-        for c in self._coros:
-            c.close()
+        _close_coros(self._coros)
         return self._response
+
+
+def _close_coros(coros: Iterable[Generator[None, bytes, None]]) -> None:
+    """Close each of the given coroutines.
+
+    Always calls .close() on each coroutine, even if doing so raises an exception.
+    Any exceptions raised are aggregated into an ExceptionBundle.
+
+    :raises ExceptionBundle: if at least one coroutine fails to close.
+    """
+    exceptions = []
+    for c in coros:
+        try:
+            c.close()
+        except Exception as e:
+            exceptions.append(e)
+
+    if exceptions:
+        # raise from the first exception so that the traceback has slightly more context
+        raise ExceptionBundle(
+            f"There were {len(exceptions)} errors closing coroutines", exceptions
+        ) from exceptions[0]
diff --git a/synapse/federation/transport/server/federation.py b/synapse/federation/transport/server/federation.py
index 6bb4659c4c..6f11138b57 100644
--- a/synapse/federation/transport/server/federation.py
+++ b/synapse/federation/transport/server/federation.py
@@ -489,7 +489,7 @@ class FederationV2InviteServlet(BaseFederationServerServlet):
 
         room_version = content["room_version"]
         event = content["event"]
-        invite_room_state = content["invite_room_state"]
+        invite_room_state = content.get("invite_room_state", [])
 
         # Synapse expects invite_room_state to be in unsigned, as it is in v1
         # API
diff --git a/synapse/handlers/account_data.py b/synapse/handlers/account_data.py
index 0478448b47..fc21d58001 100644
--- a/synapse/handlers/account_data.py
+++ b/synapse/handlers/account_data.py
@@ -225,7 +225,7 @@ class AccountDataEventSource(EventSource[int, JsonDict]):
         self,
         user: UserID,
         from_key: int,
-        limit: Optional[int],
+        limit: int,
         room_ids: Collection[str],
         is_guest: bool,
         explicit_room_id: Optional[str] = None,
diff --git a/synapse/handlers/appservice.py b/synapse/handlers/appservice.py
index 203b62e015..66f5b8d108 100644
--- a/synapse/handlers/appservice.py
+++ b/synapse/handlers/appservice.py
@@ -109,10 +109,13 @@ class ApplicationServicesHandler:
                     last_token = await self.store.get_appservice_last_pos()
                     (
                         upper_bound,
-                        events,
                         event_to_received_ts,
-                    ) = await self.store.get_all_new_events_stream(
-                        last_token, self.current_max, limit=100, get_prev_content=True
+                    ) = await self.store.get_all_new_event_ids_stream(
+                        last_token, self.current_max, limit=100
+                    )
+
+                    events = await self.store.get_events_as_list(
+                        event_to_received_ts.keys(), get_prev_content=True
                     )
 
                     events_by_room: Dict[str, List[EventBase]] = {}
diff --git a/synapse/handlers/directory.py b/synapse/handlers/directory.py
index 7127d5aefc..d52ebada6b 100644
--- a/synapse/handlers/directory.py
+++ b/synapse/handlers/directory.py
@@ -16,6 +16,8 @@ import logging
 import string
 from typing import TYPE_CHECKING, Iterable, List, Optional
 
+from typing_extensions import Literal
+
 from synapse.api.constants import MAX_ALIAS_LENGTH, EventTypes
 from synapse.api.errors import (
     AuthError,
@@ -429,7 +431,10 @@ class DirectoryHandler:
         return await self.auth.check_can_change_room_list(room_id, requester)
 
     async def edit_published_room_list(
-        self, requester: Requester, room_id: str, visibility: str
+        self,
+        requester: Requester,
+        room_id: str,
+        visibility: Literal["public", "private"],
     ) -> None:
         """Edit the entry of the room in the published room list.
 
@@ -451,9 +456,6 @@ class DirectoryHandler:
         if requester.is_guest:
             raise AuthError(403, "Guests cannot edit the published room list")
 
-        if visibility not in ["public", "private"]:
-            raise SynapseError(400, "Invalid visibility setting")
-
         if visibility == "public" and not self.enable_room_list_search:
             # The room list has been disabled.
             raise AuthError(
@@ -505,7 +507,11 @@ class DirectoryHandler:
         await self.store.set_room_is_public(room_id, making_public)
 
     async def edit_published_appservice_room_list(
-        self, appservice_id: str, network_id: str, room_id: str, visibility: str
+        self,
+        appservice_id: str,
+        network_id: str,
+        room_id: str,
+        visibility: Literal["public", "private"],
     ) -> None:
         """Add or remove a room from the appservice/network specific public
         room list.
@@ -516,9 +522,6 @@ class DirectoryHandler:
             room_id
             visibility: either "public" or "private"
         """
-        if visibility not in ["public", "private"]:
-            raise SynapseError(400, "Invalid visibility setting")
-
         await self.store.set_room_is_public_appservice(
             room_id, appservice_id, network_id, visibility == "public"
         )
diff --git a/synapse/handlers/federation.py b/synapse/handlers/federation.py
index 986ffed3d5..5f7e0a1f79 100644
--- a/synapse/handlers/federation.py
+++ b/synapse/handlers/federation.py
@@ -45,6 +45,7 @@ from synapse.api.errors import (
     Codes,
     FederationDeniedError,
     FederationError,
+    FederationPullAttemptBackoffError,
     HttpResponseException,
     LimitExceededError,
     NotFoundError,
@@ -781,15 +782,27 @@ class FederationHandler:
 
         # Send the signed event back to the room, and potentially receive some
         # further information about the room in the form of partial state events
-        stripped_room_state = await self.federation_client.send_knock(
-            target_hosts, event
-        )
+        knock_response = await self.federation_client.send_knock(target_hosts, event)
 
         # Store any stripped room state events in the "unsigned" key of the event.
         # This is a bit of a hack and is cribbing off of invites. Basically we
         # store the room state here and retrieve it again when this event appears
         # in the invitee's sync stream. It is stripped out for all other local users.
-        event.unsigned["knock_room_state"] = stripped_room_state["knock_state_events"]
+        stripped_room_state = (
+            knock_response.get("knock_room_state")
+            # Since v1.37, Synapse incorrectly used "knock_state_events" for this field.
+            # Thus, we also check for a 'knock_state_events' to support old instances.
+            # See https://github.com/matrix-org/synapse/issues/14088.
+            or knock_response.get("knock_state_events")
+        )
+
+        if stripped_room_state is None:
+            raise KeyError(
+                "Missing 'knock_room_state' (or legacy 'knock_state_events') field in "
+                "send_knock response"
+            )
+
+        event.unsigned["knock_room_state"] = stripped_room_state
 
         context = EventContext.for_outlier(self._storage_controllers)
         stream_id = await self._federation_event_handler.persist_events_and_notify(
@@ -1708,7 +1721,22 @@ class FederationHandler:
                             destination, event
                         )
                         break
+                    except FederationPullAttemptBackoffError as exc:
+                        # Log a warning about why we failed to process the event (the error message
+                        # for `FederationPullAttemptBackoffError` is pretty good)
+                        logger.warning("_sync_partial_state_room: %s", exc)
+                        # We do not record a failed pull attempt when we backoff fetching a missing
+                        # `prev_event` because not being able to fetch the `prev_events` just means
+                        # we won't be able to de-outlier the pulled event. But we can still use an
+                        # `outlier` in the state/auth chain for another event. So we shouldn't stop
+                        # a downstream event from trying to pull it.
+                        #
+                        # This avoids a cascade of backoff for all events in the DAG downstream from
+                        # one event backoff upstream.
                     except FederationError as e:
+                        # TODO: We should `record_event_failed_pull_attempt` here,
+                        #   see https://github.com/matrix-org/synapse/issues/13700
+
                         if attempt == len(destinations) - 1:
                             # We have tried every remote server for this event. Give up.
                             # TODO(faster_joins) giving up isn't the right thing to do
diff --git a/synapse/handlers/federation_event.py b/synapse/handlers/federation_event.py
index 778d8869b3..06e41b5cc0 100644
--- a/synapse/handlers/federation_event.py
+++ b/synapse/handlers/federation_event.py
@@ -44,6 +44,7 @@ from synapse.api.errors import (
     AuthError,
     Codes,
     FederationError,
+    FederationPullAttemptBackoffError,
     HttpResponseException,
     RequestSendFailed,
     SynapseError,
@@ -414,7 +415,9 @@ class FederationEventHandler:
 
         # First, precalculate the joined hosts so that the federation sender doesn't
         # need to.
-        await self._event_creation_handler.cache_joined_hosts_for_event(event, context)
+        await self._event_creation_handler.cache_joined_hosts_for_events(
+            [(event, context)]
+        )
 
         await self._check_for_soft_fail(event, context=context, origin=origin)
         await self._run_push_actions_and_persist_event(event, context)
@@ -565,6 +568,9 @@ class FederationEventHandler:
             event: partial-state event to be de-partial-stated
 
         Raises:
+            FederationPullAttemptBackoffError if we are are deliberately not attempting
+                to pull the given event over federation because we've already done so
+                recently and are backing off.
             FederationError if we fail to request state from the remote server.
         """
         logger.info("Updating state for %s", event.event_id)
@@ -792,9 +798,42 @@ class FederationEventHandler:
             ],
         )
 
+        # Check if we already any of these have these events.
+        # Note: we currently make a lookup in the database directly here rather than
+        # checking the event cache, due to:
+        # https://github.com/matrix-org/synapse/issues/13476
+        existing_events_map = await self._store._get_events_from_db(
+            [event.event_id for event in events]
+        )
+
+        new_events = []
+        for event in events:
+            event_id = event.event_id
+
+            # If we've already seen this event ID...
+            if event_id in existing_events_map:
+                existing_event = existing_events_map[event_id]
+
+                # ...and the event itself was not previously stored as an outlier...
+                if not existing_event.event.internal_metadata.is_outlier():
+                    # ...then there's no need to persist it. We have it already.
+                    logger.info(
+                        "_process_pulled_event: Ignoring received event %s which we "
+                        "have already seen",
+                        event.event_id,
+                    )
+                    continue
+
+                # While we have seen this event before, it was stored as an outlier.
+                # We'll now persist it as a non-outlier.
+                logger.info("De-outliering event %s", event_id)
+
+            # Continue on with the events that are new to us.
+            new_events.append(event)
+
         # We want to sort these by depth so we process them and
         # tell clients about them in order.
-        sorted_events = sorted(events, key=lambda x: x.depth)
+        sorted_events = sorted(new_events, key=lambda x: x.depth)
         for ev in sorted_events:
             with nested_logging_context(ev.event_id):
                 await self._process_pulled_event(origin, ev, backfilled=backfilled)
@@ -846,18 +885,6 @@ class FederationEventHandler:
 
         event_id = event.event_id
 
-        existing = await self._store.get_event(
-            event_id, allow_none=True, allow_rejected=True
-        )
-        if existing:
-            if not existing.internal_metadata.is_outlier():
-                logger.info(
-                    "_process_pulled_event: Ignoring received event %s which we have already seen",
-                    event_id,
-                )
-                return
-            logger.info("De-outliering event %s", event_id)
-
         try:
             self._sanity_check_event(event)
         except SynapseError as err:
@@ -899,6 +926,18 @@ class FederationEventHandler:
                     context,
                     backfilled=backfilled,
                 )
+        except FederationPullAttemptBackoffError as exc:
+            # Log a warning about why we failed to process the event (the error message
+            # for `FederationPullAttemptBackoffError` is pretty good)
+            logger.warning("_process_pulled_event: %s", exc)
+            # We do not record a failed pull attempt when we backoff fetching a missing
+            # `prev_event` because not being able to fetch the `prev_events` just means
+            # we won't be able to de-outlier the pulled event. But we can still use an
+            # `outlier` in the state/auth chain for another event. So we shouldn't stop
+            # a downstream event from trying to pull it.
+            #
+            # This avoids a cascade of backoff for all events in the DAG downstream from
+            # one event backoff upstream.
         except FederationError as e:
             await self._store.record_event_failed_pull_attempt(
                 event.room_id, event_id, str(e)
@@ -945,6 +984,9 @@ class FederationEventHandler:
             The event context.
 
         Raises:
+            FederationPullAttemptBackoffError if we are are deliberately not attempting
+                to pull the given event over federation because we've already done so
+                recently and are backing off.
             FederationError if we fail to get the state from the remote server after any
                 missing `prev_event`s.
         """
@@ -955,6 +997,18 @@ class FederationEventHandler:
         seen = await self._store.have_events_in_timeline(prevs)
         missing_prevs = prevs - seen
 
+        # If we've already recently attempted to pull this missing event, don't
+        # try it again so soon. Since we have to fetch all of the prev_events, we can
+        # bail early here if we find any to ignore.
+        prevs_to_ignore = await self._store.get_event_ids_to_not_pull_from_backoff(
+            room_id, missing_prevs
+        )
+        if len(prevs_to_ignore) > 0:
+            raise FederationPullAttemptBackoffError(
+                event_ids=prevs_to_ignore,
+                message=f"While computing context for event={event_id}, not attempting to pull missing prev_event={prevs_to_ignore[0]} because we already tried to pull recently (backing off).",
+            )
+
         if not missing_prevs:
             return await self._state_handler.compute_event_context(event)
 
@@ -2240,8 +2294,8 @@ class FederationEventHandler:
         event_pos = PersistedEventPosition(
             self._instance_name, event.internal_metadata.stream_ordering
         )
-        await self._notifier.on_new_room_event(
-            event, event_pos, max_stream_token, extra_users=extra_users
+        await self._notifier.on_new_room_events(
+            [(event, event_pos)], max_stream_token, extra_users=extra_users
         )
 
         if event.type == EventTypes.Member and event.membership == Membership.JOIN:
diff --git a/synapse/handlers/initial_sync.py b/synapse/handlers/initial_sync.py
index 860c82c110..9c335e6863 100644
--- a/synapse/handlers/initial_sync.py
+++ b/synapse/handlers/initial_sync.py
@@ -57,13 +57,7 @@ class InitialSyncHandler:
         self.validator = EventValidator()
         self.snapshot_cache: ResponseCache[
             Tuple[
-                str,
-                Optional[StreamToken],
-                Optional[StreamToken],
-                str,
-                Optional[int],
-                bool,
-                bool,
+                str, Optional[StreamToken], Optional[StreamToken], str, int, bool, bool
             ]
         ] = ResponseCache(hs.get_clock(), "initial_sync_cache")
         self._event_serializer = hs.get_event_client_serializer()
@@ -154,11 +148,6 @@ class InitialSyncHandler:
 
         public_room_ids = await self.store.get_public_room_ids()
 
-        if pagin_config.limit is not None:
-            limit = pagin_config.limit
-        else:
-            limit = 10
-
         serializer_options = SerializeEventConfig(as_client_event=as_client_event)
 
         async def handle_room(event: RoomsForUser) -> None:
@@ -210,7 +199,7 @@ class InitialSyncHandler:
                             run_in_background(
                                 self.store.get_recent_events_for_room,
                                 event.room_id,
-                                limit=limit,
+                                limit=pagin_config.limit,
                                 end_token=room_end_token,
                             ),
                             deferred_room_state,
@@ -360,15 +349,11 @@ class InitialSyncHandler:
             member_event_id
         )
 
-        limit = pagin_config.limit if pagin_config else None
-        if limit is None:
-            limit = 10
-
         leave_position = await self.store.get_position_for_event(member_event_id)
         stream_token = leave_position.to_room_stream_token()
 
         messages, token = await self.store.get_recent_events_for_room(
-            room_id, limit=limit, end_token=stream_token
+            room_id, limit=pagin_config.limit, end_token=stream_token
         )
 
         messages = await filter_events_for_client(
@@ -420,10 +405,6 @@ class InitialSyncHandler:
 
         now_token = self.hs.get_event_sources().get_current_token()
 
-        limit = pagin_config.limit if pagin_config else None
-        if limit is None:
-            limit = 10
-
         room_members = [
             m
             for m in current_state.values()
@@ -467,7 +448,7 @@ class InitialSyncHandler:
                     run_in_background(
                         self.store.get_recent_events_for_room,
                         room_id,
-                        limit=limit,
+                        limit=pagin_config.limit,
                         end_token=now_token.room_key,
                     ),
                 ),
diff --git a/synapse/handlers/message.py b/synapse/handlers/message.py
index 00e7645ba5..4e55ebba0b 100644
--- a/synapse/handlers/message.py
+++ b/synapse/handlers/message.py
@@ -1390,7 +1390,7 @@ class EventCreationHandler:
                             extra_users=extra_users,
                         ),
                         run_in_background(
-                            self.cache_joined_hosts_for_event, event, context
+                            self.cache_joined_hosts_for_events, events_and_context
                         ).addErrback(
                             log_failure, "cache_joined_hosts_for_event failed"
                         ),
@@ -1491,62 +1491,65 @@ class EventCreationHandler:
                 await self.store.remove_push_actions_from_staging(event.event_id)
             raise
 
-    async def cache_joined_hosts_for_event(
-        self, event: EventBase, context: EventContext
+    async def cache_joined_hosts_for_events(
+        self, events_and_context: List[Tuple[EventBase, EventContext]]
     ) -> None:
-        """Precalculate the joined hosts at the event, when using Redis, so that
+        """Precalculate the joined hosts at each of the given events, when using Redis, so that
         external federation senders don't have to recalculate it themselves.
         """
 
-        if not self._external_cache.is_enabled():
-            return
+        for event, _ in events_and_context:
+            if not self._external_cache.is_enabled():
+                return
 
-        # If external cache is enabled we should always have this.
-        assert self._external_cache_joined_hosts_updates is not None
+            # If external cache is enabled we should always have this.
+            assert self._external_cache_joined_hosts_updates is not None
 
-        # We actually store two mappings, event ID -> prev state group,
-        # state group -> joined hosts, which is much more space efficient
-        # than event ID -> joined hosts.
-        #
-        # Note: We have to cache event ID -> prev state group, as we don't
-        # store that in the DB.
-        #
-        # Note: We set the state group -> joined hosts cache if it hasn't been
-        # set for a while, so that the expiry time is reset.
-
-        state_entry = await self.state.resolve_state_groups_for_events(
-            event.room_id, event_ids=event.prev_event_ids()
-        )
+            # We actually store two mappings, event ID -> prev state group,
+            # state group -> joined hosts, which is much more space efficient
+            # than event ID -> joined hosts.
+            #
+            # Note: We have to cache event ID -> prev state group, as we don't
+            # store that in the DB.
+            #
+            # Note: We set the state group -> joined hosts cache if it hasn't been
+            # set for a while, so that the expiry time is reset.
 
-        if state_entry.state_group:
-            await self._external_cache.set(
-                "event_to_prev_state_group",
-                event.event_id,
-                state_entry.state_group,
-                expiry_ms=60 * 60 * 1000,
+            state_entry = await self.state.resolve_state_groups_for_events(
+                event.room_id, event_ids=event.prev_event_ids()
             )
 
-            if state_entry.state_group in self._external_cache_joined_hosts_updates:
-                return
+            if state_entry.state_group:
+                await self._external_cache.set(
+                    "event_to_prev_state_group",
+                    event.event_id,
+                    state_entry.state_group,
+                    expiry_ms=60 * 60 * 1000,
+                )
 
-            state = await state_entry.get_state(
-                self._storage_controllers.state, StateFilter.all()
-            )
-            with opentracing.start_active_span("get_joined_hosts"):
-                joined_hosts = await self.store.get_joined_hosts(
-                    event.room_id, state, state_entry
+                if state_entry.state_group in self._external_cache_joined_hosts_updates:
+                    return
+
+                state = await state_entry.get_state(
+                    self._storage_controllers.state, StateFilter.all()
                 )
+                with opentracing.start_active_span("get_joined_hosts"):
+                    joined_hosts = await self.store.get_joined_hosts(
+                        event.room_id, state, state_entry
+                    )
 
-            # Note that the expiry times must be larger than the expiry time in
-            # _external_cache_joined_hosts_updates.
-            await self._external_cache.set(
-                "get_joined_hosts",
-                str(state_entry.state_group),
-                list(joined_hosts),
-                expiry_ms=60 * 60 * 1000,
-            )
+                # Note that the expiry times must be larger than the expiry time in
+                # _external_cache_joined_hosts_updates.
+                await self._external_cache.set(
+                    "get_joined_hosts",
+                    str(state_entry.state_group),
+                    list(joined_hosts),
+                    expiry_ms=60 * 60 * 1000,
+                )
 
-            self._external_cache_joined_hosts_updates[state_entry.state_group] = None
+                self._external_cache_joined_hosts_updates[
+                    state_entry.state_group
+                ] = None
 
     async def _validate_canonical_alias(
         self,
@@ -1872,6 +1875,7 @@ class EventCreationHandler:
             events_and_context, backfilled=backfilled
         )
 
+        events_and_pos = []
         for event in persisted_events:
             if self._ephemeral_events_enabled:
                 # If there's an expiry timestamp on the event, schedule its expiry.
@@ -1880,25 +1884,23 @@ class EventCreationHandler:
             stream_ordering = event.internal_metadata.stream_ordering
             assert stream_ordering is not None
             pos = PersistedEventPosition(self._instance_name, stream_ordering)
-
-            async def _notify() -> None:
-                try:
-                    await self.notifier.on_new_room_event(
-                        event, pos, max_stream_token, extra_users=extra_users
-                    )
-                except Exception:
-                    logger.exception(
-                        "Error notifying about new room event %s",
-                        event.event_id,
-                    )
-
-            run_in_background(_notify)
+            events_and_pos.append((event, pos))
 
             if event.type == EventTypes.Message:
                 # We don't want to block sending messages on any presence code. This
                 # matters as sometimes presence code can take a while.
                 run_in_background(self._bump_active_time, requester.user)
 
+        async def _notify() -> None:
+            try:
+                await self.notifier.on_new_room_events(
+                    events_and_pos, max_stream_token, extra_users=extra_users
+                )
+            except Exception:
+                logger.exception("Error notifying about new room events")
+
+        run_in_background(_notify)
+
         return persisted_events[-1]
 
     async def _maybe_kick_guest_users(
diff --git a/synapse/handlers/pagination.py b/synapse/handlers/pagination.py
index 1f83bab836..a4ca9cb8b4 100644
--- a/synapse/handlers/pagination.py
+++ b/synapse/handlers/pagination.py
@@ -458,11 +458,6 @@ class PaginationHandler:
             # `/messages` should still works with live tokens when manually provided.
             assert from_token.room_key.topological is not None
 
-        if pagin_config.limit is None:
-            # This shouldn't happen as we've set a default limit before this
-            # gets called.
-            raise Exception("limit not set")
-
         room_token = from_token.room_key
 
         async with self.pagination_lock.read(room_id):
diff --git a/synapse/handlers/presence.py b/synapse/handlers/presence.py
index 4e575ffbaa..2670e561d7 100644
--- a/synapse/handlers/presence.py
+++ b/synapse/handlers/presence.py
@@ -1596,7 +1596,9 @@ class PresenceEventSource(EventSource[int, UserPresenceState]):
         self,
         user: UserID,
         from_key: Optional[int],
-        limit: Optional[int] = None,
+        # Having a default limit doesn't match the EventSource API, but some
+        # callers do not provide it. It is unused in this class.
+        limit: int = 0,
         room_ids: Optional[Collection[str]] = None,
         is_guest: bool = False,
         explicit_room_id: Optional[str] = None,
diff --git a/synapse/handlers/receipts.py b/synapse/handlers/receipts.py
index 4768a34c07..ac01582442 100644
--- a/synapse/handlers/receipts.py
+++ b/synapse/handlers/receipts.py
@@ -63,8 +63,6 @@ class ReceiptsHandler:
         self.clock = self.hs.get_clock()
         self.state = hs.get_state_handler()
 
-        self._msc3771_enabled = hs.config.experimental.msc3771_enabled
-
     async def _received_remote_receipt(self, origin: str, content: JsonDict) -> None:
         """Called when we receive an EDU of type m.receipt from a remote HS."""
         receipts = []
@@ -96,11 +94,10 @@ class ReceiptsHandler:
                     # Check if these receipts apply to a thread.
                     thread_id = None
                     data = user_values.get("data", {})
-                    if self._msc3771_enabled and isinstance(data, dict):
-                        thread_id = data.get("thread_id")
-                        # If the thread ID is invalid, consider it missing.
-                        if not isinstance(thread_id, str):
-                            thread_id = None
+                    thread_id = data.get("thread_id")
+                    # If the thread ID is invalid, consider it missing.
+                    if not isinstance(thread_id, str):
+                        thread_id = None
 
                     receipts.append(
                         ReadReceipt(
@@ -260,7 +257,7 @@ class ReceiptEventSource(EventSource[int, JsonDict]):
         self,
         user: UserID,
         from_key: int,
-        limit: Optional[int],
+        limit: int,
         room_ids: Iterable[str],
         is_guest: bool,
         explicit_room_id: Optional[str] = None,
diff --git a/synapse/handlers/relations.py b/synapse/handlers/relations.py
index 63bc6a7aa5..0a0c6d938e 100644
--- a/synapse/handlers/relations.py
+++ b/synapse/handlers/relations.py
@@ -11,6 +11,7 @@
 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 # See the License for the specific language governing permissions and
 # limitations under the License.
+import enum
 import logging
 from typing import TYPE_CHECKING, Dict, FrozenSet, Iterable, List, Optional, Tuple
 
@@ -20,7 +21,8 @@ from synapse.api.constants import RelationTypes
 from synapse.api.errors import SynapseError
 from synapse.events import EventBase, relation_from_event
 from synapse.logging.opentracing import trace
-from synapse.storage.databases.main.relations import _RelatedEvent
+from synapse.storage.databases.main.relations import ThreadsNextBatch, _RelatedEvent
+from synapse.streams.config import PaginationConfig
 from synapse.types import JsonDict, Requester, StreamToken, UserID
 from synapse.visibility import filter_events_for_client
 
@@ -31,6 +33,13 @@ if TYPE_CHECKING:
 logger = logging.getLogger(__name__)
 
 
+class ThreadsListInclude(str, enum.Enum):
+    """Valid values for the 'include' flag of /threads."""
+
+    all = "all"
+    participated = "participated"
+
+
 @attr.s(slots=True, frozen=True, auto_attribs=True)
 class _ThreadAggregation:
     # The latest event in the thread.
@@ -72,13 +81,10 @@ class RelationsHandler:
         requester: Requester,
         event_id: str,
         room_id: str,
+        pagin_config: PaginationConfig,
+        include_original_event: bool,
         relation_type: Optional[str] = None,
         event_type: Optional[str] = None,
-        limit: int = 5,
-        direction: str = "b",
-        from_token: Optional[StreamToken] = None,
-        to_token: Optional[StreamToken] = None,
-        include_original_event: bool = False,
     ) -> JsonDict:
         """Get related events of a event, ordered by topological ordering.
 
@@ -88,14 +94,10 @@ class RelationsHandler:
             requester: The user requesting the relations.
             event_id: Fetch events that relate to this event ID.
             room_id: The room the event belongs to.
+            pagin_config: The pagination config rules to apply, if any.
+            include_original_event: Whether to include the parent event.
             relation_type: Only fetch events with this relation type, if given.
             event_type: Only fetch events with this event type, if given.
-            limit: Only fetch the most recent `limit` events.
-            direction: Whether to fetch the most recent first (`"b"`) or the
-                oldest first (`"f"`).
-            from_token: Fetch rows from the given token, or from the start if None.
-            to_token: Fetch rows up to the given token, or up to the end if None.
-            include_original_event: Whether to include the parent event.
 
         Returns:
             The pagination chunk.
@@ -123,10 +125,10 @@ class RelationsHandler:
             room_id=room_id,
             relation_type=relation_type,
             event_type=event_type,
-            limit=limit,
-            direction=direction,
-            from_token=from_token,
-            to_token=to_token,
+            limit=pagin_config.limit,
+            direction=pagin_config.direction,
+            from_token=pagin_config.from_token,
+            to_token=pagin_config.to_token,
         )
 
         events = await self._main_store.get_events_as_list(
@@ -162,8 +164,10 @@ class RelationsHandler:
         if next_token:
             return_value["next_batch"] = await next_token.to_string(self._main_store)
 
-        if from_token:
-            return_value["prev_batch"] = await from_token.to_string(self._main_store)
+        if pagin_config.from_token:
+            return_value["prev_batch"] = await pagin_config.from_token.to_string(
+                self._main_store
+            )
 
         return return_value
 
@@ -483,3 +487,79 @@ class RelationsHandler:
             results.setdefault(event_id, BundledAggregations()).replace = edit
 
         return results
+
+    async def get_threads(
+        self,
+        requester: Requester,
+        room_id: str,
+        include: ThreadsListInclude,
+        limit: int = 5,
+        from_token: Optional[ThreadsNextBatch] = None,
+    ) -> JsonDict:
+        """Get related events of a event, ordered by topological ordering.
+
+        Args:
+            requester: The user requesting the relations.
+            room_id: The room the event belongs to.
+            include: One of "all" or "participated" to indicate which threads should
+                be returned.
+            limit: Only fetch the most recent `limit` events.
+            from_token: Fetch rows from the given token, or from the start if None.
+
+        Returns:
+            The pagination chunk.
+        """
+
+        user_id = requester.user.to_string()
+
+        # TODO Properly handle a user leaving a room.
+        (_, member_event_id) = await self._auth.check_user_in_room_or_world_readable(
+            room_id, requester, allow_departed_users=True
+        )
+
+        # Note that ignored users are not passed into get_relations_for_event
+        # below. Ignored users are handled in filter_events_for_client (and by
+        # not passing them in here we should get a better cache hit rate).
+        thread_roots, next_batch = await self._main_store.get_threads(
+            room_id=room_id, limit=limit, from_token=from_token
+        )
+
+        events = await self._main_store.get_events_as_list(thread_roots)
+
+        if include == ThreadsListInclude.participated:
+            # Pre-seed thread participation with whether the requester sent the event.
+            participated = {event.event_id: event.sender == user_id for event in events}
+            # For events the requester did not send, check the database for whether
+            # the requester sent a threaded reply.
+            participated.update(
+                await self._main_store.get_threads_participated(
+                    [eid for eid, p in participated.items() if not p],
+                    user_id,
+                )
+            )
+
+            # Limit the returned threads to those the user has participated in.
+            events = [event for event in events if participated[event.event_id]]
+
+        events = await filter_events_for_client(
+            self._storage_controllers,
+            user_id,
+            events,
+            is_peeking=(member_event_id is None),
+        )
+
+        aggregations = await self.get_bundled_aggregations(
+            events, requester.user.to_string()
+        )
+
+        now = self._clock.time_msec()
+        serialized_events = self._event_serializer.serialize_events(
+            events, now, bundle_aggregations=aggregations
+        )
+
+        return_value: JsonDict = {"chunk": serialized_events}
+
+        if next_batch:
+            return_value["next_batch"] = str(next_batch)
+
+        return return_value
diff --git a/synapse/handlers/room.py b/synapse/handlers/room.py
index 57ab05ad25..4e1aacb408 100644
--- a/synapse/handlers/room.py
+++ b/synapse/handlers/room.py
@@ -1646,7 +1646,7 @@ class RoomEventSource(EventSource[RoomStreamToken, EventBase]):
         self,
         user: UserID,
         from_key: RoomStreamToken,
-        limit: Optional[int],
+        limit: int,
         room_ids: Collection[str],
         is_guest: bool,
         explicit_room_id: Optional[str] = None,
diff --git a/synapse/handlers/sync.py b/synapse/handlers/sync.py
index 4abb9b6127..1db5d68021 100644
--- a/synapse/handlers/sync.py
+++ b/synapse/handlers/sync.py
@@ -40,7 +40,7 @@ from synapse.handlers.relations import BundledAggregations
 from synapse.logging.context import current_context
 from synapse.logging.opentracing import SynapseTags, log_kv, set_tag, start_active_span
 from synapse.push.clientformat import format_push_rules_for_user
-from synapse.storage.databases.main.event_push_actions import NotifCounts
+from synapse.storage.databases.main.event_push_actions import RoomNotifCounts
 from synapse.storage.roommember import MemberSummary
 from synapse.storage.state import StateFilter
 from synapse.types import (
@@ -128,6 +128,7 @@ class JoinedSyncResult:
     ephemeral: List[JsonDict]
     account_data: List[JsonDict]
     unread_notifications: JsonDict
+    unread_thread_notifications: JsonDict
     summary: Optional[JsonDict]
     unread_count: int
 
@@ -1288,7 +1289,7 @@ class SyncHandler:
 
     async def unread_notifs_for_room_id(
         self, room_id: str, sync_config: SyncConfig
-    ) -> NotifCounts:
+    ) -> RoomNotifCounts:
         with Measure(self.clock, "unread_notifs_for_room_id"):
 
             return await self.store.get_unread_event_push_actions_by_room_for_user(
@@ -1314,6 +1315,19 @@ class SyncHandler:
         At the end, we transfer data from the `sync_result_builder` to a new `SyncResult`
         instance to signify that the sync calculation is complete.
         """
+
+        user_id = sync_config.user.to_string()
+        app_service = self.store.get_app_service_by_user_id(user_id)
+        if app_service:
+            # We no longer support AS users using /sync directly.
+            # See https://github.com/matrix-org/matrix-doc/issues/1144
+            raise NotImplementedError()
+
+        # Note: we get the users room list *before* we get the current token, this
+        # avoids checking back in history if rooms are joined after the token is fetched.
+        token_before_rooms = self.event_sources.get_current_token()
+        mutable_joined_room_ids = set(await self.store.get_rooms_for_user(user_id))
+
         # NB: The now_token gets changed by some of the generate_sync_* methods,
         # this is due to some of the underlying streams not supporting the ability
         # to query up to a given point.
@@ -1321,6 +1335,57 @@ class SyncHandler:
         now_token = self.event_sources.get_current_token()
         log_kv({"now_token": now_token})
 
+        # Since we fetched the users room list before the token, there's a small window
+        # during which membership events may have been persisted, so we fetch these now
+        # and modify the joined room list for any changes between the get_rooms_for_user
+        # call and the get_current_token call.
+        membership_change_events = []
+        if since_token:
+            membership_change_events = await self.store.get_membership_changes_for_user(
+                user_id, since_token.room_key, now_token.room_key, self.rooms_to_exclude
+            )
+
+            mem_last_change_by_room_id: Dict[str, EventBase] = {}
+            for event in membership_change_events:
+                mem_last_change_by_room_id[event.room_id] = event
+
+            # For the latest membership event in each room found, add/remove the room ID
+            # from the joined room list accordingly. In this case we only care if the
+            # latest change is JOIN.
+
+            for room_id, event in mem_last_change_by_room_id.items():
+                assert event.internal_metadata.stream_ordering
+                if (
+                    event.internal_metadata.stream_ordering
+                    < token_before_rooms.room_key.stream
+                ):
+                    continue
+
+                logger.info(
+                    "User membership change between getting rooms and current token: %s %s %s",
+                    user_id,
+                    event.membership,
+                    room_id,
+                )
+                # User joined a room - we have to then check the room state to ensure we
+                # respect any bans if there's a race between the join and ban events.
+                if event.membership == Membership.JOIN:
+                    user_ids_in_room = await self.store.get_users_in_room(room_id)
+                    if user_id in user_ids_in_room:
+                        mutable_joined_room_ids.add(room_id)
+                # The user left the room, or left and was re-invited but not joined yet
+                else:
+                    mutable_joined_room_ids.discard(room_id)
+
+        # Now we have our list of joined room IDs, exclude as configured and freeze
+        joined_room_ids = frozenset(
+            (
+                room_id
+                for room_id in mutable_joined_room_ids
+                if room_id not in self.rooms_to_exclude
+            )
+        )
+
         logger.debug(
             "Calculating sync response for %r between %s and %s",
             sync_config.user,
@@ -1328,22 +1393,13 @@ class SyncHandler:
             now_token,
         )
 
-        user_id = sync_config.user.to_string()
-        app_service = self.store.get_app_service_by_user_id(user_id)
-        if app_service:
-            # We no longer support AS users using /sync directly.
-            # See https://github.com/matrix-org/matrix-doc/issues/1144
-            raise NotImplementedError()
-        else:
-            joined_room_ids = await self.get_rooms_for_user_at(
-                user_id, now_token.room_key
-            )
         sync_result_builder = SyncResultBuilder(
             sync_config,
             full_state,
             since_token=since_token,
             now_token=now_token,
             joined_room_ids=joined_room_ids,
+            membership_change_events=membership_change_events,
         )
 
         logger.debug("Fetching account data")
@@ -1824,19 +1880,12 @@ class SyncHandler:
 
         Does not modify the `sync_result_builder`.
         """
-        user_id = sync_result_builder.sync_config.user.to_string()
         since_token = sync_result_builder.since_token
-        now_token = sync_result_builder.now_token
+        membership_change_events = sync_result_builder.membership_change_events
 
         assert since_token
 
-        # Get a list of membership change events that have happened to the user
-        # requesting the sync.
-        membership_changes = await self.store.get_membership_changes_for_user(
-            user_id, since_token.room_key, now_token.room_key
-        )
-
-        if membership_changes:
+        if membership_change_events:
             return True
 
         stream_id = since_token.room_key.stream
@@ -1875,16 +1924,10 @@ class SyncHandler:
         since_token = sync_result_builder.since_token
         now_token = sync_result_builder.now_token
         sync_config = sync_result_builder.sync_config
+        membership_change_events = sync_result_builder.membership_change_events
 
         assert since_token
 
-        # TODO: we've already called this function and ran this query in
-        #       _have_rooms_changed. We could keep the results in memory to avoid a
-        #       second query, at the cost of more complicated source code.
-        membership_change_events = await self.store.get_membership_changes_for_user(
-            user_id, since_token.room_key, now_token.room_key, self.rooms_to_exclude
-        )
-
         mem_change_events_by_room_id: Dict[str, List[EventBase]] = {}
         for event in membership_change_events:
             mem_change_events_by_room_id.setdefault(event.room_id, []).append(event)
@@ -2353,6 +2396,7 @@ class SyncHandler:
                     ephemeral=ephemeral,
                     account_data=account_data_events,
                     unread_notifications=unread_notifications,
+                    unread_thread_notifications={},
                     summary=summary,
                     unread_count=0,
                 )
@@ -2360,10 +2404,33 @@ class SyncHandler:
                 if room_sync or always_include:
                     notifs = await self.unread_notifs_for_room_id(room_id, sync_config)
 
-                    unread_notifications["notification_count"] = notifs.notify_count
-                    unread_notifications["highlight_count"] = notifs.highlight_count
-
-                    room_sync.unread_count = notifs.unread_count
+                    # Notifications for the main timeline.
+                    notify_count = notifs.main_timeline.notify_count
+                    highlight_count = notifs.main_timeline.highlight_count
+                    unread_count = notifs.main_timeline.unread_count
+
+                    # Check the sync configuration.
+                    if sync_config.filter_collection.unread_thread_notifications():
+                        # And add info for each thread.
+                        room_sync.unread_thread_notifications = {
+                            thread_id: {
+                                "notification_count": thread_notifs.notify_count,
+                                "highlight_count": thread_notifs.highlight_count,
+                            }
+                            for thread_id, thread_notifs in notifs.threads.items()
+                            if thread_id is not None
+                        }
+
+                    else:
+                        # Combine the unread counts for all threads and main timeline.
+                        for thread_notifs in notifs.threads.values():
+                            notify_count += thread_notifs.notify_count
+                            highlight_count += thread_notifs.highlight_count
+                            unread_count += thread_notifs.unread_count
+
+                    unread_notifications["notification_count"] = notify_count
+                    unread_notifications["highlight_count"] = highlight_count
+                    room_sync.unread_count = unread_count
 
                     sync_result_builder.joined.append(room_sync)
 
@@ -2385,60 +2452,6 @@ class SyncHandler:
             else:
                 raise Exception("Unrecognized rtype: %r", room_builder.rtype)
 
-    async def get_rooms_for_user_at(
-        self,
-        user_id: str,
-        room_key: RoomStreamToken,
-    ) -> FrozenSet[str]:
-        """Get set of joined rooms for a user at the given stream ordering.
-
-        The stream ordering *must* be recent, otherwise this may throw an
-        exception if older than a month. (This function is called with the
-        current token, which should be perfectly fine).
-
-        Args:
-            user_id
-            stream_ordering
-
-        ReturnValue:
-            Set of room_ids the user is in at given stream_ordering.
-        """
-        joined_rooms = await self.store.get_rooms_for_user_with_stream_ordering(user_id)
-
-        joined_room_ids = set()
-
-        # We need to check that the stream ordering of the join for each room
-        # is before the stream_ordering asked for. This might not be the case
-        # if the user joins a room between us getting the current token and
-        # calling `get_rooms_for_user_with_stream_ordering`.
-        # If the membership's stream ordering is after the given stream
-        # ordering, we need to go and work out if the user was in the room
-        # before.
-        # We also need to check whether the room should be excluded from sync
-        # responses as per the homeserver config.
-        for joined_room in joined_rooms:
-            if joined_room.room_id in self.rooms_to_exclude:
-                continue
-
-            if not joined_room.event_pos.persisted_after(room_key):
-                joined_room_ids.add(joined_room.room_id)
-                continue
-
-            logger.info("User joined room after current token: %s", joined_room.room_id)
-
-            extrems = (
-                await self.store.get_forward_extremities_for_room_at_stream_ordering(
-                    joined_room.room_id, joined_room.event_pos.stream
-                )
-            )
-            user_ids_in_room = await self.state.get_current_user_ids_in_room(
-                joined_room.room_id, extrems
-            )
-            if user_id in user_ids_in_room:
-                joined_room_ids.add(joined_room.room_id)
-
-        return frozenset(joined_room_ids)
-
 
 def _action_has_highlight(actions: List[JsonDict]) -> bool:
     for action in actions:
@@ -2535,6 +2548,7 @@ class SyncResultBuilder:
     since_token: Optional[StreamToken]
     now_token: StreamToken
     joined_room_ids: FrozenSet[str]
+    membership_change_events: List[EventBase]
 
     presence: List[UserPresenceState] = attr.Factory(list)
     account_data: List[JsonDict] = attr.Factory(list)
diff --git a/synapse/handlers/typing.py b/synapse/handlers/typing.py
index f953691669..a0ea719430 100644
--- a/synapse/handlers/typing.py
+++ b/synapse/handlers/typing.py
@@ -513,7 +513,7 @@ class TypingNotificationEventSource(EventSource[int, JsonDict]):
         self,
         user: UserID,
         from_key: int,
-        limit: Optional[int],
+        limit: int,
         room_ids: Iterable[str],
         is_guest: bool,
         explicit_room_id: Optional[str] = None,
diff --git a/synapse/http/servlet.py b/synapse/http/servlet.py
index 80acbdcf3c..dead02cd5c 100644
--- a/synapse/http/servlet.py
+++ b/synapse/http/servlet.py
@@ -35,6 +35,7 @@ from typing_extensions import Literal
 from twisted.web.server import Request
 
 from synapse.api.errors import Codes, SynapseError
+from synapse.http import redact_uri
 from synapse.http.server import HttpServer
 from synapse.types import JsonDict, RoomAlias, RoomID
 from synapse.util import json_decoder
@@ -664,7 +665,13 @@ def parse_json_value_from_request(
     try:
         content = json_decoder.decode(content_bytes.decode("utf-8"))
     except Exception as e:
-        logger.warning("Unable to parse JSON: %s (%s)", e, content_bytes)
+        logger.warning(
+            "Unable to parse JSON from %s %s response: %s (%s)",
+            request.method.decode("ascii", errors="replace"),
+            redact_uri(request.uri.decode("ascii", errors="replace")),
+            e,
+            content_bytes,
+        )
         raise SynapseError(
             HTTPStatus.BAD_REQUEST, "Content not JSON.", errcode=Codes.NOT_JSON
         )
diff --git a/synapse/metrics/_legacy_exposition.py b/synapse/metrics/_legacy_exposition.py
index 563d8cc2c6..1459f9d224 100644
--- a/synapse/metrics/_legacy_exposition.py
+++ b/synapse/metrics/_legacy_exposition.py
@@ -20,7 +20,7 @@ Due to the renaming of metrics in prometheus_client 0.4.0, this customised
 vendoring of the code will emit both the old versions that Synapse dashboards
 expect, and the newer "best practice" version of the up-to-date official client.
 """
-
+import logging
 import math
 import threading
 from http.server import BaseHTTPRequestHandler, HTTPServer
@@ -34,6 +34,7 @@ from prometheus_client.core import Sample
 from twisted.web.resource import Resource
 from twisted.web.server import Request
 
+logger = logging.getLogger(__name__)
 CONTENT_TYPE_LATEST = "text/plain; version=0.0.4; charset=utf-8"
 
 
@@ -219,11 +220,16 @@ class MetricsHandler(BaseHTTPRequestHandler):
         except Exception:
             self.send_error(500, "error generating metric output")
             raise
-        self.send_response(200)
-        self.send_header("Content-Type", CONTENT_TYPE_LATEST)
-        self.send_header("Content-Length", str(len(output)))
-        self.end_headers()
-        self.wfile.write(output)
+        try:
+            self.send_response(200)
+            self.send_header("Content-Type", CONTENT_TYPE_LATEST)
+            self.send_header("Content-Length", str(len(output)))
+            self.end_headers()
+            self.wfile.write(output)
+        except BrokenPipeError as e:
+            logger.warning(
+                "BrokenPipeError when serving metrics (%s). Did Prometheus restart?", e
+            )
 
     def log_message(self, format: str, *args: Any) -> None:
         """Log nothing."""
diff --git a/synapse/notifier.py b/synapse/notifier.py
index c42bb8266a..26b97cf766 100644
--- a/synapse/notifier.py
+++ b/synapse/notifier.py
@@ -294,35 +294,31 @@ class Notifier:
         """
         self._new_join_in_room_callbacks.append(cb)
 
-    async def on_new_room_event(
+    async def on_new_room_events(
         self,
-        event: EventBase,
-        event_pos: PersistedEventPosition,
+        events_and_pos: List[Tuple[EventBase, PersistedEventPosition]],
         max_room_stream_token: RoomStreamToken,
         extra_users: Optional[Collection[UserID]] = None,
     ) -> None:
-        """Unwraps event and calls `on_new_room_event_args`."""
-        await self.on_new_room_event_args(
-            event_pos=event_pos,
-            room_id=event.room_id,
-            event_id=event.event_id,
-            event_type=event.type,
-            state_key=event.get("state_key"),
-            membership=event.content.get("membership"),
-            max_room_stream_token=max_room_stream_token,
-            extra_users=extra_users or [],
-        )
+        """Creates a _PendingRoomEventEntry for each of the listed events and calls
+        notify_new_room_events with the results."""
+        event_entries = []
+        for event, pos in events_and_pos:
+            entry = self.create_pending_room_event_entry(
+                pos,
+                extra_users,
+                event.room_id,
+                event.type,
+                event.get("state_key"),
+                event.content.get("membership"),
+            )
+            event_entries.append((entry, event.event_id))
+        await self.notify_new_room_events(event_entries, max_room_stream_token)
 
-    async def on_new_room_event_args(
+    async def notify_new_room_events(
         self,
-        room_id: str,
-        event_id: str,
-        event_type: str,
-        state_key: Optional[str],
-        membership: Optional[str],
-        event_pos: PersistedEventPosition,
+        event_entries: List[Tuple[_PendingRoomEventEntry, str]],
         max_room_stream_token: RoomStreamToken,
-        extra_users: Optional[Collection[UserID]] = None,
     ) -> None:
         """Used by handlers to inform the notifier something has happened
         in the room, room event wise.
@@ -338,22 +334,33 @@ class Notifier:
         until all previous events have been persisted before notifying
         the client streams.
         """
-        self.pending_new_room_events.append(
-            _PendingRoomEventEntry(
-                event_pos=event_pos,
-                extra_users=extra_users or [],
-                room_id=room_id,
-                type=event_type,
-                state_key=state_key,
-                membership=membership,
-            )
-        )
-        self._notify_pending_new_room_events(max_room_stream_token)
+        for event_entry, event_id in event_entries:
+            self.pending_new_room_events.append(event_entry)
+            await self._third_party_rules.on_new_event(event_id)
 
-        await self._third_party_rules.on_new_event(event_id)
+        self._notify_pending_new_room_events(max_room_stream_token)
 
         self.notify_replication()
 
+    def create_pending_room_event_entry(
+        self,
+        event_pos: PersistedEventPosition,
+        extra_users: Optional[Collection[UserID]],
+        room_id: str,
+        event_type: str,
+        state_key: Optional[str],
+        membership: Optional[str],
+    ) -> _PendingRoomEventEntry:
+        """Creates and returns a _PendingRoomEventEntry"""
+        return _PendingRoomEventEntry(
+            event_pos=event_pos,
+            extra_users=extra_users or [],
+            room_id=room_id,
+            type=event_type,
+            state_key=state_key,
+            membership=membership,
+        )
+
     def _notify_pending_new_room_events(
         self, max_room_stream_token: RoomStreamToken
     ) -> None:
diff --git a/synapse/push/bulk_push_rule_evaluator.py b/synapse/push/bulk_push_rule_evaluator.py
index 998354648f..a75386f6a0 100644
--- a/synapse/push/bulk_push_rule_evaluator.py
+++ b/synapse/push/bulk_push_rule_evaluator.py
@@ -13,32 +13,29 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
-import itertools
 import logging
 from typing import (
     TYPE_CHECKING,
     Any,
     Collection,
     Dict,
-    Iterable,
     List,
     Mapping,
     Optional,
-    Set,
     Tuple,
     Union,
 )
 
 from prometheus_client import Counter
 
-from synapse.api.constants import EventTypes, Membership, RelationTypes
+from synapse.api.constants import MAIN_TIMELINE, EventTypes, Membership, RelationTypes
 from synapse.event_auth import auth_types_for_event, get_user_power_level
 from synapse.events import EventBase, relation_from_event
 from synapse.events.snapshot import EventContext
 from synapse.state import POWER_KEY
 from synapse.storage.databases.main.roommember import EventIdMembership
 from synapse.storage.state import StateFilter
-from synapse.synapse_rust.push import FilteredPushRules, PushRule, PushRuleEvaluator
+from synapse.synapse_rust.push import FilteredPushRules, PushRuleEvaluator
 from synapse.util.caches import register_cache
 from synapse.util.metrics import measure_func
 from synapse.visibility import filter_event_for_clients_with_state
@@ -117,9 +114,6 @@ class BulkPushRuleEvaluator:
             resizable=False,
         )
 
-        # Whether to support MSC3772 is supported.
-        self._relations_match_enabled = self.hs.config.experimental.msc3772_enabled
-
     async def _get_rules_for_event(
         self,
         event: EventBase,
@@ -200,51 +194,6 @@ class BulkPushRuleEvaluator:
 
         return pl_event.content if pl_event else {}, sender_level
 
-    async def _get_mutual_relations(
-        self, parent_id: str, rules: Iterable[Tuple[PushRule, bool]]
-    ) -> Dict[str, Set[Tuple[str, str]]]:
-        """
-        Fetch event metadata for events which related to the same event as the given event.
-
-        If the given event has no relation information, returns an empty dictionary.
-
-        Args:
-            parent_id: The event ID which is targeted by relations.
-            rules: The push rules which will be processed for this event.
-
-        Returns:
-            A dictionary of relation type to:
-                A set of tuples of:
-                    The sender
-                    The event type
-        """
-
-        # If the experimental feature is not enabled, skip fetching relations.
-        if not self._relations_match_enabled:
-            return {}
-
-        # Pre-filter to figure out which relation types are interesting.
-        rel_types = set()
-        for rule, enabled in rules:
-            if not enabled:
-                continue
-
-            for condition in rule.conditions:
-                if condition["kind"] != "org.matrix.msc3772.relation_match":
-                    continue
-
-                # rel_type is required.
-                rel_type = condition.get("rel_type")
-                if rel_type:
-                    rel_types.add(rel_type)
-
-        # If no valid rules were found, no mutual relations.
-        if not rel_types:
-            return {}
-
-        # If any valid rules were found, fetch the mutual relations.
-        return await self.store.get_mutual_event_relations(parent_id, rel_types)
-
     @measure_func("action_for_event_by_user")
     async def action_for_event_by_user(
         self, event: EventBase, context: EventContext
@@ -276,18 +225,18 @@ class BulkPushRuleEvaluator:
             sender_power_level,
         ) = await self._get_power_levels_and_sender_level(event, context)
 
+        # Find the event's thread ID.
         relation = relation_from_event(event)
-        # If the event does not have a relation, then cannot have any mutual
-        # relations or thread ID.
-        relations = {}
-        thread_id = "main"
+        # If the event does not have a relation, then it cannot have a thread ID.
+        thread_id = MAIN_TIMELINE
         if relation:
-            relations = await self._get_mutual_relations(
-                relation.parent_id,
-                itertools.chain(*(r.rules() for r in rules_by_user.values())),
-            )
+            # Recursively attempt to find the thread this event relates to.
             if relation.rel_type == RelationTypes.THREAD:
                 thread_id = relation.parent_id
+            else:
+                # Since the event has not yet been persisted we check whether
+                # the parent is part of a thread.
+                thread_id = await self.store.get_thread_id(relation.parent_id)
 
         # It's possible that old room versions have non-integer power levels (floats or
         # strings). Workaround this by explicitly converting to int.
@@ -301,8 +250,6 @@ class BulkPushRuleEvaluator:
             room_member_count,
             sender_power_level,
             notification_levels,
-            relations,
-            self._relations_match_enabled,
         )
 
         users = rules_by_user.keys()
diff --git a/synapse/push/push_tools.py b/synapse/push/push_tools.py
index 658bf373b7..edeba27a45 100644
--- a/synapse/push/push_tools.py
+++ b/synapse/push/push_tools.py
@@ -39,7 +39,12 @@ async def get_badge_count(store: DataStore, user_id: str, group_by_room: bool) -
     await concurrently_execute(get_room_unread_count, joins, 10)
 
     for notifs in room_notifs:
-        if notifs.notify_count == 0:
+        # Combine the counts from all the threads.
+        notify_count = notifs.main_timeline.notify_count + sum(
+            n.notify_count for n in notifs.threads.values()
+        )
+
+        if notify_count == 0:
             continue
 
         if group_by_room:
@@ -47,7 +52,7 @@ async def get_badge_count(store: DataStore, user_id: str, group_by_room: bool) -
             badge += 1
         else:
             # increment the badge count by the number of unread messages in the room
-            badge += notifs.notify_count
+            badge += notify_count
     return badge
 
 
diff --git a/synapse/replication/tcp/client.py b/synapse/replication/tcp/client.py
index b2522f98ca..18252a2958 100644
--- a/synapse/replication/tcp/client.py
+++ b/synapse/replication/tcp/client.py
@@ -210,15 +210,16 @@ class ReplicationDataHandler:
 
                 max_token = self.store.get_room_max_token()
                 event_pos = PersistedEventPosition(instance_name, token)
-                await self.notifier.on_new_room_event_args(
-                    event_pos=event_pos,
-                    max_room_stream_token=max_token,
-                    extra_users=extra_users,
-                    room_id=row.data.room_id,
-                    event_id=row.data.event_id,
-                    event_type=row.data.type,
-                    state_key=row.data.state_key,
-                    membership=row.data.membership,
+                event_entry = self.notifier.create_pending_room_event_entry(
+                    event_pos,
+                    extra_users,
+                    row.data.room_id,
+                    row.data.type,
+                    row.data.state_key,
+                    row.data.membership,
+                )
+                await self.notifier.notify_new_room_events(
+                    [(event_entry, row.data.event_id)], max_token
                 )
 
                 # If this event is a join, make a note of it so we have an accurate
diff --git a/synapse/rest/client/devices.py b/synapse/rest/client/devices.py
index ed6ce78d47..90828c95c4 100644
--- a/synapse/rest/client/devices.py
+++ b/synapse/rest/client/devices.py
@@ -14,18 +14,21 @@
 # limitations under the License.
 
 import logging
-from typing import TYPE_CHECKING, Tuple
+from typing import TYPE_CHECKING, List, Optional, Tuple
+
+from pydantic import Extra, StrictStr
 
 from synapse.api import errors
 from synapse.api.errors import NotFoundError
 from synapse.http.server import HttpServer
 from synapse.http.servlet import (
     RestServlet,
-    assert_params_in_dict,
-    parse_json_object_from_request,
+    parse_and_validate_json_object_from_request,
 )
 from synapse.http.site import SynapseRequest
 from synapse.rest.client._base import client_patterns, interactive_auth_handler
+from synapse.rest.client.models import AuthenticationData
+from synapse.rest.models import RequestBodyModel
 from synapse.types import JsonDict
 
 if TYPE_CHECKING:
@@ -80,27 +83,29 @@ class DeleteDevicesRestServlet(RestServlet):
         self.device_handler = hs.get_device_handler()
         self.auth_handler = hs.get_auth_handler()
 
+    class PostBody(RequestBodyModel):
+        auth: Optional[AuthenticationData]
+        devices: List[StrictStr]
+
     @interactive_auth_handler
     async def on_POST(self, request: SynapseRequest) -> Tuple[int, JsonDict]:
         requester = await self.auth.get_user_by_req(request)
 
         try:
-            body = parse_json_object_from_request(request)
+            body = parse_and_validate_json_object_from_request(request, self.PostBody)
         except errors.SynapseError as e:
             if e.errcode == errors.Codes.NOT_JSON:
-                # DELETE
+                # TODO: Can/should we remove this fallback now?
                 # deal with older clients which didn't pass a JSON dict
                 # the same as those that pass an empty dict
-                body = {}
+                body = self.PostBody.parse_obj({})
             else:
                 raise e
 
-        assert_params_in_dict(body, ["devices"])
-
         await self.auth_handler.validate_user_via_ui_auth(
             requester,
             request,
-            body,
+            body.dict(exclude_unset=True),
             "remove device(s) from your account",
             # Users might call this multiple times in a row while cleaning up
             # devices, allow a single UI auth session to be re-used.
@@ -108,7 +113,7 @@ class DeleteDevicesRestServlet(RestServlet):
         )
 
         await self.device_handler.delete_devices(
-            requester.user.to_string(), body["devices"]
+            requester.user.to_string(), body.devices
         )
         return 200, {}
 
@@ -147,6 +152,9 @@ class DeviceRestServlet(RestServlet):
 
         return 200, device
 
+    class DeleteBody(RequestBodyModel):
+        auth: Optional[AuthenticationData]
+
     @interactive_auth_handler
     async def on_DELETE(
         self, request: SynapseRequest, device_id: str
@@ -154,20 +162,21 @@ class DeviceRestServlet(RestServlet):
         requester = await self.auth.get_user_by_req(request)
 
         try:
-            body = parse_json_object_from_request(request)
+            body = parse_and_validate_json_object_from_request(request, self.DeleteBody)
 
         except errors.SynapseError as e:
             if e.errcode == errors.Codes.NOT_JSON:
+                # TODO: can/should we remove this fallback now?
                 # deal with older clients which didn't pass a JSON dict
                 # the same as those that pass an empty dict
-                body = {}
+                body = self.DeleteBody.parse_obj({})
             else:
                 raise
 
         await self.auth_handler.validate_user_via_ui_auth(
             requester,
             request,
-            body,
+            body.dict(exclude_unset=True),
             "remove a device from your account",
             # Users might call this multiple times in a row while cleaning up
             # devices, allow a single UI auth session to be re-used.
@@ -179,18 +188,33 @@ class DeviceRestServlet(RestServlet):
         )
         return 200, {}
 
+    class PutBody(RequestBodyModel):
+        display_name: Optional[StrictStr]
+
     async def on_PUT(
         self, request: SynapseRequest, device_id: str
     ) -> Tuple[int, JsonDict]:
         requester = await self.auth.get_user_by_req(request, allow_guest=True)
 
-        body = parse_json_object_from_request(request)
+        body = parse_and_validate_json_object_from_request(request, self.PutBody)
         await self.device_handler.update_device(
-            requester.user.to_string(), device_id, body
+            requester.user.to_string(), device_id, body.dict()
         )
         return 200, {}
 
 
+class DehydratedDeviceDataModel(RequestBodyModel):
+    """JSON blob describing a dehydrated device to be stored.
+
+    Expects other freeform fields. Use .dict() to access them.
+    """
+
+    class Config:
+        extra = Extra.allow
+
+    algorithm: StrictStr
+
+
 class DehydratedDeviceServlet(RestServlet):
     """Retrieve or store a dehydrated device.
 
@@ -246,27 +270,19 @@ class DehydratedDeviceServlet(RestServlet):
         else:
             raise errors.NotFoundError("No dehydrated device available")
 
+    class PutBody(RequestBodyModel):
+        device_id: StrictStr
+        device_data: DehydratedDeviceDataModel
+        initial_device_display_name: Optional[StrictStr]
+
     async def on_PUT(self, request: SynapseRequest) -> Tuple[int, JsonDict]:
-        submission = parse_json_object_from_request(request)
+        submission = parse_and_validate_json_object_from_request(request, self.PutBody)
         requester = await self.auth.get_user_by_req(request)
 
-        if "device_data" not in submission:
-            raise errors.SynapseError(
-                400,
-                "device_data missing",
-                errcode=errors.Codes.MISSING_PARAM,
-            )
-        elif not isinstance(submission["device_data"], dict):
-            raise errors.SynapseError(
-                400,
-                "device_data must be an object",
-                errcode=errors.Codes.INVALID_PARAM,
-            )
-
         device_id = await self.device_handler.store_dehydrated_device(
             requester.user.to_string(),
-            submission["device_data"],
-            submission.get("initial_device_display_name", None),
+            submission.device_data,
+            submission.initial_device_display_name,
         )
         return 200, {"device_id": device_id}
 
@@ -300,28 +316,18 @@ class ClaimDehydratedDeviceServlet(RestServlet):
         self.auth = hs.get_auth()
         self.device_handler = hs.get_device_handler()
 
+    class PostBody(RequestBodyModel):
+        device_id: StrictStr
+
     async def on_POST(self, request: SynapseRequest) -> Tuple[int, JsonDict]:
         requester = await self.auth.get_user_by_req(request)
 
-        submission = parse_json_object_from_request(request)
-
-        if "device_id" not in submission:
-            raise errors.SynapseError(
-                400,
-                "device_id missing",
-                errcode=errors.Codes.MISSING_PARAM,
-            )
-        elif not isinstance(submission["device_id"], str):
-            raise errors.SynapseError(
-                400,
-                "device_id must be a string",
-                errcode=errors.Codes.INVALID_PARAM,
-            )
+        submission = parse_and_validate_json_object_from_request(request, self.PostBody)
 
         result = await self.device_handler.rehydrate_device(
             requester.user.to_string(),
             self.auth.get_access_token_from_request(request),
-            submission["device_id"],
+            submission.device_id,
         )
 
         return 200, result
diff --git a/synapse/rest/client/directory.py b/synapse/rest/client/directory.py
index bc1b18c92d..f17b4c8d22 100644
--- a/synapse/rest/client/directory.py
+++ b/synapse/rest/client/directory.py
@@ -13,15 +13,22 @@
 # limitations under the License.
 
 import logging
-from typing import TYPE_CHECKING, Tuple
+from typing import TYPE_CHECKING, List, Optional, Tuple
+
+from pydantic import StrictStr
+from typing_extensions import Literal
 
 from twisted.web.server import Request
 
 from synapse.api.errors import AuthError, Codes, NotFoundError, SynapseError
 from synapse.http.server import HttpServer
-from synapse.http.servlet import RestServlet, parse_json_object_from_request
+from synapse.http.servlet import (
+    RestServlet,
+    parse_and_validate_json_object_from_request,
+)
 from synapse.http.site import SynapseRequest
 from synapse.rest.client._base import client_patterns
+from synapse.rest.models import RequestBodyModel
 from synapse.types import JsonDict, RoomAlias
 
 if TYPE_CHECKING:
@@ -54,6 +61,12 @@ class ClientDirectoryServer(RestServlet):
 
         return 200, res
 
+    class PutBody(RequestBodyModel):
+        # TODO: get Pydantic to validate that this is a valid room id?
+        room_id: StrictStr
+        # `servers` is unspecced
+        servers: Optional[List[StrictStr]] = None
+
     async def on_PUT(
         self, request: SynapseRequest, room_alias: str
     ) -> Tuple[int, JsonDict]:
@@ -61,31 +74,22 @@ class ClientDirectoryServer(RestServlet):
             raise SynapseError(400, "Room alias invalid", errcode=Codes.INVALID_PARAM)
         room_alias_obj = RoomAlias.from_string(room_alias)
 
-        content = parse_json_object_from_request(request)
-        if "room_id" not in content:
-            raise SynapseError(
-                400, 'Missing params: ["room_id"]', errcode=Codes.BAD_JSON
-            )
+        content = parse_and_validate_json_object_from_request(request, self.PutBody)
 
         logger.debug("Got content: %s", content)
         logger.debug("Got room name: %s", room_alias_obj.to_string())
 
-        room_id = content["room_id"]
-        servers = content["servers"] if "servers" in content else None
-
-        logger.debug("Got room_id: %s", room_id)
-        logger.debug("Got servers: %s", servers)
+        logger.debug("Got room_id: %s", content.room_id)
+        logger.debug("Got servers: %s", content.servers)
 
-        # TODO(erikj): Check types.
-
-        room = await self.store.get_room(room_id)
+        room = await self.store.get_room(content.room_id)
         if room is None:
             raise SynapseError(400, "Room does not exist")
 
         requester = await self.auth.get_user_by_req(request)
 
         await self.directory_handler.create_association(
-            requester, room_alias_obj, room_id, servers
+            requester, room_alias_obj, content.room_id, content.servers
         )
 
         return 200, {}
@@ -137,16 +141,18 @@ class ClientDirectoryListServer(RestServlet):
 
         return 200, {"visibility": "public" if room["is_public"] else "private"}
 
+    class PutBody(RequestBodyModel):
+        visibility: Literal["public", "private"] = "public"
+
     async def on_PUT(
         self, request: SynapseRequest, room_id: str
     ) -> Tuple[int, JsonDict]:
         requester = await self.auth.get_user_by_req(request)
 
-        content = parse_json_object_from_request(request)
-        visibility = content.get("visibility", "public")
+        content = parse_and_validate_json_object_from_request(request, self.PutBody)
 
         await self.directory_handler.edit_published_room_list(
-            requester, room_id, visibility
+            requester, room_id, content.visibility
         )
 
         return 200, {}
@@ -163,12 +169,14 @@ class ClientAppserviceDirectoryListServer(RestServlet):
         self.directory_handler = hs.get_directory_handler()
         self.auth = hs.get_auth()
 
+    class PutBody(RequestBodyModel):
+        visibility: Literal["public", "private"] = "public"
+
     async def on_PUT(
         self, request: SynapseRequest, network_id: str, room_id: str
     ) -> Tuple[int, JsonDict]:
-        content = parse_json_object_from_request(request)
-        visibility = content.get("visibility", "public")
-        return await self._edit(request, network_id, room_id, visibility)
+        content = parse_and_validate_json_object_from_request(request, self.PutBody)
+        return await self._edit(request, network_id, room_id, content.visibility)
 
     async def on_DELETE(
         self, request: SynapseRequest, network_id: str, room_id: str
@@ -176,7 +184,11 @@ class ClientAppserviceDirectoryListServer(RestServlet):
         return await self._edit(request, network_id, room_id, "private")
 
     async def _edit(
-        self, request: SynapseRequest, network_id: str, room_id: str, visibility: str
+        self,
+        request: SynapseRequest,
+        network_id: str,
+        room_id: str,
+        visibility: Literal["public", "private"],
     ) -> Tuple[int, JsonDict]:
         requester = await self.auth.get_user_by_req(request)
         if not requester.app_service:
diff --git a/synapse/rest/client/events.py b/synapse/rest/client/events.py
index 916f5230f1..782e7d14e8 100644
--- a/synapse/rest/client/events.py
+++ b/synapse/rest/client/events.py
@@ -50,7 +50,9 @@ class EventStreamRestServlet(RestServlet):
                 raise SynapseError(400, "Guest users must specify room_id param")
         room_id = parse_string(request, "room_id")
 
-        pagin_config = await PaginationConfig.from_request(self.store, request)
+        pagin_config = await PaginationConfig.from_request(
+            self.store, request, default_limit=10
+        )
         timeout = EventStreamRestServlet.DEFAULT_LONGPOLL_TIME_MS
         if b"timeout" in args:
             try:
diff --git a/synapse/rest/client/initial_sync.py b/synapse/rest/client/initial_sync.py
index cfadcb8e50..9b1bb8b521 100644
--- a/synapse/rest/client/initial_sync.py
+++ b/synapse/rest/client/initial_sync.py
@@ -39,7 +39,9 @@ class InitialSyncRestServlet(RestServlet):
         requester = await self.auth.get_user_by_req(request)
         args: Dict[bytes, List[bytes]] = request.args  # type: ignore
         as_client_event = b"raw" not in args
-        pagination_config = await PaginationConfig.from_request(self.store, request)
+        pagination_config = await PaginationConfig.from_request(
+            self.store, request, default_limit=10
+        )
         include_archived = parse_boolean(request, "archived", default=False)
         content = await self.initial_sync_handler.snapshot_all_rooms(
             user_id=requester.user.to_string(),
diff --git a/synapse/rest/client/receipts.py b/synapse/rest/client/receipts.py
index f3ff156abe..18a282b22c 100644
--- a/synapse/rest/client/receipts.py
+++ b/synapse/rest/client/receipts.py
@@ -15,8 +15,8 @@
 import logging
 from typing import TYPE_CHECKING, Tuple
 
-from synapse.api.constants import ReceiptTypes
-from synapse.api.errors import SynapseError
+from synapse.api.constants import MAIN_TIMELINE, ReceiptTypes
+from synapse.api.errors import Codes, SynapseError
 from synapse.http.server import HttpServer
 from synapse.http.servlet import RestServlet, parse_json_object_from_request
 from synapse.http.site import SynapseRequest
@@ -43,13 +43,13 @@ class ReceiptRestServlet(RestServlet):
         self.receipts_handler = hs.get_receipts_handler()
         self.read_marker_handler = hs.get_read_marker_handler()
         self.presence_handler = hs.get_presence_handler()
+        self._main_store = hs.get_datastores().main
 
         self._known_receipt_types = {
             ReceiptTypes.READ,
             ReceiptTypes.READ_PRIVATE,
             ReceiptTypes.FULLY_READ,
         }
-        self._msc3771_enabled = hs.config.experimental.msc3771_enabled
 
     async def on_POST(
         self, request: SynapseRequest, room_id: str, receipt_type: str, event_id: str
@@ -66,13 +66,29 @@ class ReceiptRestServlet(RestServlet):
 
         # Pull the thread ID, if one exists.
         thread_id = None
-        if self._msc3771_enabled:
-            if "thread_id" in body:
-                thread_id = body.get("thread_id")
-                if not thread_id or not isinstance(thread_id, str):
-                    raise SynapseError(
-                        400, "thread_id field must be a non-empty string"
-                    )
+        if "thread_id" in body:
+            thread_id = body.get("thread_id")
+            if not thread_id or not isinstance(thread_id, str):
+                raise SynapseError(
+                    400,
+                    "thread_id field must be a non-empty string",
+                    Codes.INVALID_PARAM,
+                )
+
+            if receipt_type == ReceiptTypes.FULLY_READ:
+                raise SynapseError(
+                    400,
+                    f"thread_id is not compatible with {ReceiptTypes.FULLY_READ} receipts.",
+                    Codes.INVALID_PARAM,
+                )
+
+            # Ensure the event ID roughly correlates to the thread ID.
+            if not await self._is_event_in_thread(event_id, thread_id):
+                raise SynapseError(
+                    400,
+                    f"event_id {event_id} is not related to thread {thread_id}",
+                    Codes.INVALID_PARAM,
+                )
 
         await self.presence_handler.bump_presence_active_time(requester.user)
 
@@ -93,6 +109,46 @@ class ReceiptRestServlet(RestServlet):
 
         return 200, {}
 
+    async def _is_event_in_thread(self, event_id: str, thread_id: str) -> bool:
+        """
+        The event must be related to the thread ID (in a vague sense) to ensure
+        clients aren't sending bogus receipts.
+
+        A thread ID is considered valid for a given event E if:
+
+        1. E has a thread relation which matches the thread ID;
+        2. E has another event which has a thread relation to E matching the
+           thread ID; or
+        3. E is recursively related (via any rel_type) to an event which
+           satisfies 1 or 2.
+
+        Given the following DAG:
+
+            A <---[m.thread]-- B <--[m.annotation]-- C
+            ^
+            |--[m.reference]-- D <--[m.annotation]-- E
+
+        It is valid to send a receipt for thread A on A, B, C, D, or E.
+
+        It is valid to send a receipt for the main timeline on A, D, and E.
+
+        Args:
+            event_id: The event ID to check.
+            thread_id: The thread ID the event is potentially part of.
+
+        Returns:
+            True if the event belongs to the given thread, otherwise False.
+        """
+
+        # If the receipt is on the main timeline, it is enough to check whether
+        # the event is directly related to a thread.
+        if thread_id == MAIN_TIMELINE:
+            return MAIN_TIMELINE == await self._main_store.get_thread_id(event_id)
+
+        # Otherwise, check if the event is directly part of a thread, or is the
+        # root message (or related to the root message) of a thread.
+        return thread_id == await self._main_store.get_thread_id_for_receipts(event_id)
+
 
 def register_servlets(hs: "HomeServer", http_server: HttpServer) -> None:
     ReceiptRestServlet(hs).register(http_server)
diff --git a/synapse/rest/client/relations.py b/synapse/rest/client/relations.py
index 7a25de5c85..9dd59196d9 100644
--- a/synapse/rest/client/relations.py
+++ b/synapse/rest/client/relations.py
@@ -13,13 +13,17 @@
 # limitations under the License.
 
 import logging
+import re
 from typing import TYPE_CHECKING, Optional, Tuple
 
+from synapse.handlers.relations import ThreadsListInclude
 from synapse.http.server import HttpServer
 from synapse.http.servlet import RestServlet, parse_integer, parse_string
 from synapse.http.site import SynapseRequest
 from synapse.rest.client._base import client_patterns
-from synapse.types import JsonDict, StreamToken
+from synapse.storage.databases.main.relations import ThreadsNextBatch
+from synapse.streams.config import PaginationConfig
+from synapse.types import JsonDict
 
 if TYPE_CHECKING:
     from synapse.server import HomeServer
@@ -41,9 +45,8 @@ class RelationPaginationServlet(RestServlet):
     def __init__(self, hs: "HomeServer"):
         super().__init__()
         self.auth = hs.get_auth()
-        self.store = hs.get_datastores().main
+        self._store = hs.get_datastores().main
         self._relations_handler = hs.get_relations_handler()
-        self._msc3715_enabled = hs.config.experimental.msc3715_enabled
 
     async def on_GET(
         self,
@@ -55,49 +58,63 @@ class RelationPaginationServlet(RestServlet):
     ) -> Tuple[int, JsonDict]:
         requester = await self.auth.get_user_by_req(request, allow_guest=True)
 
-        limit = parse_integer(request, "limit", default=5)
-        # Fetch the direction parameter, if provided.
-        #
-        # TODO Use PaginationConfig.from_request when the unstable parameter is
-        #      no longer needed.
-        direction = parse_string(request, "dir", allowed_values=["f", "b"])
-        if direction is None:
-            if self._msc3715_enabled:
-                direction = parse_string(
-                    request,
-                    "org.matrix.msc3715.dir",
-                    default="b",
-                    allowed_values=["f", "b"],
-                )
-            else:
-                direction = "b"
-        from_token_str = parse_string(request, "from")
-        to_token_str = parse_string(request, "to")
-
-        # Return the relations
-        from_token = None
-        if from_token_str:
-            from_token = await StreamToken.from_string(self.store, from_token_str)
-        to_token = None
-        if to_token_str:
-            to_token = await StreamToken.from_string(self.store, to_token_str)
+        pagination_config = await PaginationConfig.from_request(
+            self._store, request, default_limit=5, default_dir="b"
+        )
 
         # The unstable version of this API returns an extra field for client
         # compatibility, see https://github.com/matrix-org/synapse/issues/12930.
         assert request.path is not None
         include_original_event = request.path.startswith(b"/_matrix/client/unstable/")
 
+        # Return the relations
         result = await self._relations_handler.get_relations(
             requester=requester,
             event_id=parent_id,
             room_id=room_id,
+            pagin_config=pagination_config,
+            include_original_event=include_original_event,
             relation_type=relation_type,
             event_type=event_type,
+        )
+
+        return 200, result
+
+
+class ThreadsServlet(RestServlet):
+    PATTERNS = (re.compile("^/_matrix/client/v1/rooms/(?P<room_id>[^/]*)/threads"),)
+
+    def __init__(self, hs: "HomeServer"):
+        super().__init__()
+        self.auth = hs.get_auth()
+        self.store = hs.get_datastores().main
+        self._relations_handler = hs.get_relations_handler()
+
+    async def on_GET(
+        self, request: SynapseRequest, room_id: str
+    ) -> Tuple[int, JsonDict]:
+        requester = await self.auth.get_user_by_req(request)
+
+        limit = parse_integer(request, "limit", default=5)
+        from_token_str = parse_string(request, "from")
+        include = parse_string(
+            request,
+            "include",
+            default=ThreadsListInclude.all.value,
+            allowed_values=[v.value for v in ThreadsListInclude],
+        )
+
+        # Return the relations
+        from_token = None
+        if from_token_str:
+            from_token = ThreadsNextBatch.from_string(from_token_str)
+
+        result = await self._relations_handler.get_threads(
+            requester=requester,
+            room_id=room_id,
+            include=ThreadsListInclude(include),
             limit=limit,
-            direction=direction,
             from_token=from_token,
-            to_token=to_token,
-            include_original_event=include_original_event,
         )
 
         return 200, result
@@ -105,3 +122,4 @@ class RelationPaginationServlet(RestServlet):
 
 def register_servlets(hs: "HomeServer", http_server: HttpServer) -> None:
     RelationPaginationServlet(hs).register(http_server)
+    ThreadsServlet(hs).register(http_server)
diff --git a/synapse/rest/client/room.py b/synapse/rest/client/room.py
index b6dedbed04..01e5079963 100644
--- a/synapse/rest/client/room.py
+++ b/synapse/rest/client/room.py
@@ -729,7 +729,9 @@ class RoomInitialSyncRestServlet(RestServlet):
         self, request: SynapseRequest, room_id: str
     ) -> Tuple[int, JsonDict]:
         requester = await self.auth.get_user_by_req(request, allow_guest=True)
-        pagination_config = await PaginationConfig.from_request(self.store, request)
+        pagination_config = await PaginationConfig.from_request(
+            self.store, request, default_limit=10
+        )
         content = await self.initial_sync_handler.room_initial_sync(
             room_id=room_id, requester=requester, pagin_config=pagination_config
         )
diff --git a/synapse/rest/client/sync.py b/synapse/rest/client/sync.py
index c2989765ce..8a16459105 100644
--- a/synapse/rest/client/sync.py
+++ b/synapse/rest/client/sync.py
@@ -100,6 +100,7 @@ class SyncRestServlet(RestServlet):
         self._server_notices_sender = hs.get_server_notices_sender()
         self._event_serializer = hs.get_event_client_serializer()
         self._msc2654_enabled = hs.config.experimental.msc2654_enabled
+        self._msc3773_enabled = hs.config.experimental.msc3773_enabled
 
     async def on_GET(self, request: SynapseRequest) -> Tuple[int, JsonDict]:
         # This will always be set by the time Twisted calls us.
@@ -509,6 +510,12 @@ class SyncRestServlet(RestServlet):
             ephemeral_events = room.ephemeral
             result["ephemeral"] = {"events": ephemeral_events}
             result["unread_notifications"] = room.unread_notifications
+            if room.unread_thread_notifications:
+                result["unread_thread_notifications"] = room.unread_thread_notifications
+                if self._msc3773_enabled:
+                    result[
+                        "org.matrix.msc3773.unread_thread_notifications"
+                    ] = room.unread_thread_notifications
             result["summary"] = room.summary
             if self._msc2654_enabled:
                 result["org.matrix.msc2654.unread_count"] = room.unread_count
diff --git a/synapse/rest/client/versions.py b/synapse/rest/client/versions.py
index c95b0d6f19..4b87ee978a 100644
--- a/synapse/rest/client/versions.py
+++ b/synapse/rest/client/versions.py
@@ -75,6 +75,8 @@ class VersionsRestServlet(RestServlet):
                     "r0.6.1",
                     "v1.1",
                     "v1.2",
+                    "v1.3",
+                    "v1.4",
                 ],
                 # as per MSC1497:
                 "unstable_features": {
@@ -103,14 +105,17 @@ class VersionsRestServlet(RestServlet):
                     "org.matrix.msc3030": self.config.experimental.msc3030_enabled,
                     # Adds support for thread relations, per MSC3440.
                     "org.matrix.msc3440.stable": True,  # TODO: remove when "v1.3" is added above
-                    # Support for thread read receipts.
-                    "org.matrix.msc3771": self.config.experimental.msc3771_enabled,
+                    # Support for thread read receipts & notification counts.
+                    "org.matrix.msc3771": True,
+                    "org.matrix.msc3773": self.config.experimental.msc3773_enabled,
                     # Allows moderators to fetch redacted event content as described in MSC2815
                     "fi.mau.msc2815": self.config.experimental.msc2815_enabled,
                     # Adds support for login token requests as per MSC3882
                     "org.matrix.msc3882": self.config.experimental.msc3882_enabled,
                     # Adds support for remotely enabling/disabling pushers, as per MSC3881
                     "org.matrix.msc3881": self.config.experimental.msc3881_enabled,
+                    # Adds support for filtering /messages by event relation.
+                    "org.matrix.msc3874": self.config.experimental.msc3874_enabled,
                 },
             },
         )
diff --git a/synapse/rest/media/v1/oembed.py b/synapse/rest/media/v1/oembed.py
index 2177b46c9e..827afd868d 100644
--- a/synapse/rest/media/v1/oembed.py
+++ b/synapse/rest/media/v1/oembed.py
@@ -139,65 +139,72 @@ class OEmbedProvider:
         try:
             # oEmbed responses *must* be UTF-8 according to the spec.
             oembed = json_decoder.decode(raw_body.decode("utf-8"))
+        except ValueError:
+            return OEmbedResult({}, None, None)
 
-            # The version is a required string field, but not always provided,
-            # or sometimes provided as a float. Be lenient.
-            oembed_version = oembed.get("version", "1.0")
-            if oembed_version != "1.0" and oembed_version != 1:
-                raise RuntimeError(f"Invalid oEmbed version: {oembed_version}")
+        # The version is a required string field, but not always provided,
+        # or sometimes provided as a float. Be lenient.
+        oembed_version = oembed.get("version", "1.0")
+        if oembed_version != "1.0" and oembed_version != 1:
+            return OEmbedResult({}, None, None)
 
-            # Ensure the cache age is None or an int.
-            cache_age = oembed.get("cache_age")
-            if cache_age:
-                cache_age = int(cache_age) * 1000
-
-            # The results.
-            open_graph_response = {
-                "og:url": url,
-            }
-
-            title = oembed.get("title")
-            if title:
-                open_graph_response["og:title"] = title
-
-            author_name = oembed.get("author_name")
+        # Attempt to parse the cache age, if possible.
+        try:
+            cache_age = int(oembed.get("cache_age")) * 1000
+        except (TypeError, ValueError):
+            # If the cache age cannot be parsed (e.g. wrong type or invalid
+            # string), ignore it.
+            cache_age = None
 
-            # Use the provider name and as the site.
-            provider_name = oembed.get("provider_name")
-            if provider_name:
-                open_graph_response["og:site_name"] = provider_name
+        # The oEmbed response converted to Open Graph.
+        open_graph_response: JsonDict = {"og:url": url}
 
-            # If a thumbnail exists, use it. Note that dimensions will be calculated later.
-            if "thumbnail_url" in oembed:
-                open_graph_response["og:image"] = oembed["thumbnail_url"]
+        title = oembed.get("title")
+        if title and isinstance(title, str):
+            open_graph_response["og:title"] = title
 
-            # Process each type separately.
-            oembed_type = oembed["type"]
-            if oembed_type == "rich":
-                calc_description_and_urls(open_graph_response, oembed["html"])
-
-            elif oembed_type == "photo":
-                # If this is a photo, use the full image, not the thumbnail.
-                open_graph_response["og:image"] = oembed["url"]
+        author_name = oembed.get("author_name")
+        if not isinstance(author_name, str):
+            author_name = None
 
-            elif oembed_type == "video":
-                open_graph_response["og:type"] = "video.other"
+        # Use the provider name and as the site.
+        provider_name = oembed.get("provider_name")
+        if provider_name and isinstance(provider_name, str):
+            open_graph_response["og:site_name"] = provider_name
+
+        # If a thumbnail exists, use it. Note that dimensions will be calculated later.
+        thumbnail_url = oembed.get("thumbnail_url")
+        if thumbnail_url and isinstance(thumbnail_url, str):
+            open_graph_response["og:image"] = thumbnail_url
+
+        # Process each type separately.
+        oembed_type = oembed.get("type")
+        if oembed_type == "rich":
+            html = oembed.get("html")
+            if isinstance(html, str):
+                calc_description_and_urls(open_graph_response, html)
+
+        elif oembed_type == "photo":
+            # If this is a photo, use the full image, not the thumbnail.
+            url = oembed.get("url")
+            if url and isinstance(url, str):
+                open_graph_response["og:image"] = url
+
+        elif oembed_type == "video":
+            open_graph_response["og:type"] = "video.other"
+            html = oembed.get("html")
+            if html and isinstance(html, str):
                 calc_description_and_urls(open_graph_response, oembed["html"])
-                open_graph_response["og:video:width"] = oembed["width"]
-                open_graph_response["og:video:height"] = oembed["height"]
-
-            elif oembed_type == "link":
-                open_graph_response["og:type"] = "website"
+            for size in ("width", "height"):
+                val = oembed.get(size)
+                if val is not None and isinstance(val, int):
+                    open_graph_response[f"og:video:{size}"] = val
 
-            else:
-                raise RuntimeError(f"Unknown oEmbed type: {oembed_type}")
+        elif oembed_type == "link":
+            open_graph_response["og:type"] = "website"
 
-        except Exception as e:
-            # Trap any exception and let the code follow as usual.
-            logger.warning("Error parsing oEmbed metadata from %s: %r", url, e)
-            open_graph_response = {}
-            author_name = None
-            cache_age = None
+        else:
+            logger.warning("Unknown oEmbed type: %s", oembed_type)
 
         return OEmbedResult(open_graph_response, author_name, cache_age)
 
diff --git a/synapse/storage/database.py b/synapse/storage/database.py
index b4469eb964..7bb21f8f81 100644
--- a/synapse/storage/database.py
+++ b/synapse/storage/database.py
@@ -94,7 +94,7 @@ UNIQUE_INDEX_BACKGROUND_UPDATES = {
     "event_search": "event_search_event_id_idx",
     "local_media_repository_thumbnails": "local_media_repository_thumbnails_method_idx",
     "remote_media_cache_thumbnails": "remote_media_repository_thumbnails_method_idx",
-    "event_push_summary": "event_push_summary_unique_index",
+    "event_push_summary": "event_push_summary_unique_index2",
     "receipts_linearized": "receipts_linearized_unique_index",
     "receipts_graph": "receipts_graph_unique_index",
 }
diff --git a/synapse/storage/databases/main/cache.py b/synapse/storage/databases/main/cache.py
index 3b8ed1f7ee..ddb7397714 100644
--- a/synapse/storage/databases/main/cache.py
+++ b/synapse/storage/databases/main/cache.py
@@ -244,12 +244,18 @@ class CacheInvalidationWorkerStore(SQLBaseStore):
             # redacted.
             self._attempt_to_invalidate_cache("get_relations_for_event", (redacts,))
             self._attempt_to_invalidate_cache("get_applicable_edit", (redacts,))
+            self._attempt_to_invalidate_cache("get_thread_id", (redacts,))
+            self._attempt_to_invalidate_cache("get_thread_id_for_receipts", (redacts,))
 
         if etype == EventTypes.Member:
             self._membership_stream_cache.entity_has_changed(state_key, stream_ordering)
             self._attempt_to_invalidate_cache(
                 "get_invited_rooms_for_local_user", (state_key,)
             )
+            self._attempt_to_invalidate_cache(
+                "get_rooms_for_user_with_stream_ordering", (state_key,)
+            )
+            self._attempt_to_invalidate_cache("get_rooms_for_user", (state_key,))
 
         if relates_to:
             self._attempt_to_invalidate_cache("get_relations_for_event", (relates_to,))
@@ -259,9 +265,7 @@ class CacheInvalidationWorkerStore(SQLBaseStore):
             self._attempt_to_invalidate_cache("get_applicable_edit", (relates_to,))
             self._attempt_to_invalidate_cache("get_thread_summary", (relates_to,))
             self._attempt_to_invalidate_cache("get_thread_participated", (relates_to,))
-            self._attempt_to_invalidate_cache(
-                "get_mutual_event_relations_for_rel_type", (relates_to,)
-            )
+            self._attempt_to_invalidate_cache("get_threads", (room_id,))
 
     async def invalidate_cache_and_stream(
         self, cache_name: str, keys: Tuple[Any, ...]
diff --git a/synapse/storage/databases/main/event_federation.py b/synapse/storage/databases/main/event_federation.py
index 6b9a629edd..309a4ba664 100644
--- a/synapse/storage/databases/main/event_federation.py
+++ b/synapse/storage/databases/main/event_federation.py
@@ -1501,6 +1501,12 @@ class EventFederationWorkerStore(SignatureWorkerStore, EventsWorkerStore, SQLBas
             event_id: The event that failed to be fetched or processed
             cause: The error message or reason that we failed to pull the event
         """
+        logger.debug(
+            "record_event_failed_pull_attempt room_id=%s, event_id=%s, cause=%s",
+            room_id,
+            event_id,
+            cause,
+        )
         await self.db_pool.runInteraction(
             "record_event_failed_pull_attempt",
             self._record_event_failed_pull_attempt_upsert_txn,
@@ -1530,6 +1536,54 @@ class EventFederationWorkerStore(SignatureWorkerStore, EventsWorkerStore, SQLBas
 
         txn.execute(sql, (room_id, event_id, 1, self._clock.time_msec(), cause))
 
+    @trace
+    async def get_event_ids_to_not_pull_from_backoff(
+        self,
+        room_id: str,
+        event_ids: Collection[str],
+    ) -> List[str]:
+        """
+        Filter down the events to ones that we've failed to pull before recently. Uses
+        exponential backoff.
+
+        Args:
+            room_id: The room that the events belong to
+            event_ids: A list of events to filter down
+
+        Returns:
+            List of event_ids that should not be attempted to be pulled
+        """
+        event_failed_pull_attempts = await self.db_pool.simple_select_many_batch(
+            table="event_failed_pull_attempts",
+            column="event_id",
+            iterable=event_ids,
+            keyvalues={},
+            retcols=(
+                "event_id",
+                "last_attempt_ts",
+                "num_attempts",
+            ),
+            desc="get_event_ids_to_not_pull_from_backoff",
+        )
+
+        current_time = self._clock.time_msec()
+        return [
+            event_failed_pull_attempt["event_id"]
+            for event_failed_pull_attempt in event_failed_pull_attempts
+            # Exponential back-off (up to the upper bound) so we don't try to
+            # pull the same event over and over. ex. 2hr, 4hr, 8hr, 16hr, etc.
+            if current_time
+            < event_failed_pull_attempt["last_attempt_ts"]
+            + (
+                2
+                ** min(
+                    event_failed_pull_attempt["num_attempts"],
+                    BACKFILL_EVENT_EXPONENTIAL_BACKOFF_MAXIMUM_DOUBLING_STEPS,
+                )
+            )
+            * BACKFILL_EVENT_EXPONENTIAL_BACKOFF_STEP_MILLISECONDS
+        ]
+
     async def get_missing_events(
         self,
         room_id: str,
diff --git a/synapse/storage/databases/main/event_push_actions.py b/synapse/storage/databases/main/event_push_actions.py
index 72cf91eb39..f070e6e88a 100644
--- a/synapse/storage/databases/main/event_push_actions.py
+++ b/synapse/storage/databases/main/event_push_actions.py
@@ -88,7 +88,7 @@ from typing import (
 
 import attr
 
-from synapse.api.constants import ReceiptTypes
+from synapse.api.constants import MAIN_TIMELINE, ReceiptTypes
 from synapse.metrics.background_process_metrics import wrap_as_background_process
 from synapse.storage._base import SQLBaseStore, db_to_json, make_in_list_sql_clause
 from synapse.storage.database import (
@@ -119,6 +119,32 @@ DEFAULT_HIGHLIGHT_ACTION: List[Union[dict, str]] = [
 ]
 
 
+@attr.s(slots=True, auto_attribs=True)
+class _RoomReceipt:
+    """
+    HttpPushAction instances include the information used to generate HTTP
+    requests to a push gateway.
+    """
+
+    unthreaded_stream_ordering: int = 0
+    # threaded_stream_ordering includes the main pseudo-thread.
+    threaded_stream_ordering: Dict[str, int] = attr.Factory(dict)
+
+    def is_unread(self, thread_id: str, stream_ordering: int) -> bool:
+        """Returns True if the stream ordering is unread according to the receipt information."""
+
+        # Only include push actions with a stream ordering after both the unthreaded
+        # and threaded receipt. Properly handles a user without any receipts present.
+        return (
+            self.unthreaded_stream_ordering < stream_ordering
+            and self.threaded_stream_ordering.get(thread_id, 0) < stream_ordering
+        )
+
+
+# A _RoomReceipt with no receipts in it.
+MISSING_ROOM_RECEIPT = _RoomReceipt()
+
+
 @attr.s(slots=True, frozen=True, auto_attribs=True)
 class HttpPushAction:
     """
@@ -157,7 +183,7 @@ class UserPushAction(EmailPushAction):
 @attr.s(slots=True, auto_attribs=True)
 class NotifCounts:
     """
-    The per-user, per-room count of notifications. Used by sync and push.
+    The per-user, per-room, per-thread count of notifications. Used by sync and push.
     """
 
     notify_count: int = 0
@@ -165,6 +191,21 @@ class NotifCounts:
     highlight_count: int = 0
 
 
+@attr.s(slots=True, auto_attribs=True)
+class RoomNotifCounts:
+    """
+    The per-user, per-room count of notifications. Used by sync and push.
+    """
+
+    main_timeline: NotifCounts
+    # Map of thread ID to the notification counts.
+    threads: Dict[str, NotifCounts]
+
+    def __len__(self) -> int:
+        # To properly account for the amount of space in any caches.
+        return len(self.threads) + 1
+
+
 def _serialize_action(
     actions: Collection[Union[Mapping, str]], is_highlight: bool
 ) -> str:
@@ -384,12 +425,12 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
 
         return result
 
-    @cached(tree=True, max_entries=5000)
+    @cached(tree=True, max_entries=5000, iterable=True)
     async def get_unread_event_push_actions_by_room_for_user(
         self,
         room_id: str,
         user_id: str,
-    ) -> NotifCounts:
+    ) -> RoomNotifCounts:
         """Get the notification count, the highlight count and the unread message count
         for a given user in a given room after their latest read receipt.
 
@@ -402,8 +443,9 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
             user_id: The user to retrieve the counts for.
 
         Returns
-            A NotifCounts object containing the notification count, the highlight count
-            and the unread message count.
+            A RoomNotifCounts object containing the notification count, the
+            highlight count and the unread message count for both the main timeline
+            and threads.
         """
         return await self.db_pool.runInteraction(
             "get_unread_event_push_actions_by_room",
@@ -417,7 +459,7 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
         txn: LoggingTransaction,
         room_id: str,
         user_id: str,
-    ) -> NotifCounts:
+    ) -> RoomNotifCounts:
         # Get the stream ordering of the user's latest receipt in the room.
         result = self.get_last_unthreaded_receipt_for_user_txn(
             txn,
@@ -451,8 +493,8 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
         txn: LoggingTransaction,
         room_id: str,
         user_id: str,
-        receipt_stream_ordering: int,
-    ) -> NotifCounts:
+        unthreaded_receipt_stream_ordering: int,
+    ) -> RoomNotifCounts:
         """Get the number of unread messages for a user/room that have happened
         since the given stream ordering.
 
@@ -460,78 +502,204 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
             txn: The database transaction.
             room_id: The room ID to get unread counts for.
             user_id: The user ID to get unread counts for.
-            receipt_stream_ordering: The stream ordering of the user's latest
-                receipt in the room. If there are no receipts, the stream ordering
-                of the user's join event.
+            unthreaded_receipt_stream_ordering: The stream ordering of the user's latest
+                unthreaded receipt in the room. If there are no unthreaded receipts,
+                the stream ordering of the user's join event.
 
-        Returns
-            A NotifCounts object containing the notification count, the highlight count
-            and the unread message count.
+        Returns:
+            A RoomNotifCounts object containing the notification count, the
+            highlight count and the unread message count for both the main timeline
+            and threads.
         """
 
-        counts = NotifCounts()
+        main_counts = NotifCounts()
+        thread_counts: Dict[str, NotifCounts] = {}
+
+        def _get_thread(thread_id: str) -> NotifCounts:
+            if thread_id == MAIN_TIMELINE:
+                return main_counts
+            return thread_counts.setdefault(thread_id, NotifCounts())
+
+        receipt_types_clause, receipts_args = make_in_list_sql_clause(
+            self.database_engine,
+            "receipt_type",
+            (ReceiptTypes.READ, ReceiptTypes.READ_PRIVATE),
+        )
 
         # First we pull the counts from the summary table.
         #
-        # We check that `last_receipt_stream_ordering` matches the stream
-        # ordering given. If it doesn't match then a new read receipt has arrived and
-        # we haven't yet updated the counts in `event_push_summary` to reflect
-        # that; in that case we simply ignore `event_push_summary` counts
-        # and do a manual count of all of the rows in the `event_push_actions` table
-        # for this user/room.
+        # We check that `last_receipt_stream_ordering` matches the stream ordering of the
+        # latest receipt for the thread (which may be either the unthreaded read receipt
+        # or the threaded read receipt).
+        #
+        # If it doesn't match then a new read receipt has arrived and we haven't yet
+        # updated the counts in `event_push_summary` to reflect that; in that case we
+        # simply ignore `event_push_summary` counts.
+        #
+        # We then do a manual count of all the rows in the `event_push_actions` table
+        # for any user/room/thread which did not have a valid summary found.
         #
-        # If `last_receipt_stream_ordering` is null then that means it's up to
-        # date (as the row was written by an older version of Synapse that
+        # If `last_receipt_stream_ordering` is null then that means it's up-to-date
+        # (as the row was written by an older version of Synapse that
         # updated `event_push_summary` synchronously when persisting a new read
         # receipt).
         txn.execute(
-            """
-                SELECT stream_ordering, notif_count, COALESCE(unread_count, 0)
+            f"""
+                SELECT notif_count, COALESCE(unread_count, 0), thread_id
                 FROM event_push_summary
+                LEFT JOIN (
+                    SELECT thread_id, MAX(stream_ordering) AS threaded_receipt_stream_ordering
+                    FROM receipts_linearized
+                    LEFT JOIN events USING (room_id, event_id)
+                    WHERE
+                        user_id = ?
+                        AND room_id = ?
+                        AND stream_ordering > ?
+                        AND {receipt_types_clause}
+                    GROUP BY thread_id
+                ) AS receipts USING (thread_id)
                 WHERE room_id = ? AND user_id = ?
                 AND (
-                    (last_receipt_stream_ordering IS NULL AND stream_ordering > ?)
-                    OR last_receipt_stream_ordering = ?
-                )
+                    (last_receipt_stream_ordering IS NULL AND stream_ordering > COALESCE(threaded_receipt_stream_ordering, ?))
+                    OR last_receipt_stream_ordering = COALESCE(threaded_receipt_stream_ordering, ?)
+                ) AND (notif_count != 0 OR COALESCE(unread_count, 0) != 0)
             """,
-            (room_id, user_id, receipt_stream_ordering, receipt_stream_ordering),
+            (
+                user_id,
+                room_id,
+                unthreaded_receipt_stream_ordering,
+                *receipts_args,
+                room_id,
+                user_id,
+                unthreaded_receipt_stream_ordering,
+                unthreaded_receipt_stream_ordering,
+            ),
         )
-        row = txn.fetchone()
-
-        summary_stream_ordering = 0
-        if row:
-            summary_stream_ordering = row[0]
-            counts.notify_count += row[1]
-            counts.unread_count += row[2]
+        summarised_threads = set()
+        for notif_count, unread_count, thread_id in txn:
+            summarised_threads.add(thread_id)
+            counts = _get_thread(thread_id)
+            counts.notify_count += notif_count
+            counts.unread_count += unread_count
 
         # Next we need to count highlights, which aren't summarised
-        sql = """
-            SELECT COUNT(*) FROM event_push_actions
+        sql = f"""
+            SELECT COUNT(*), thread_id FROM event_push_actions
+            LEFT JOIN (
+                SELECT thread_id, MAX(stream_ordering) AS threaded_receipt_stream_ordering
+                FROM receipts_linearized
+                LEFT JOIN events USING (room_id, event_id)
+                WHERE
+                    user_id = ?
+                    AND room_id = ?
+                    AND stream_ordering > ?
+                    AND {receipt_types_clause}
+                GROUP BY thread_id
+            ) AS receipts USING (thread_id)
             WHERE user_id = ?
                 AND room_id = ?
-                AND stream_ordering > ?
+                AND stream_ordering > COALESCE(threaded_receipt_stream_ordering, ?)
                 AND highlight = 1
+            GROUP BY thread_id
         """
-        txn.execute(sql, (user_id, room_id, receipt_stream_ordering))
-        row = txn.fetchone()
-        if row:
-            counts.highlight_count += row[0]
+        txn.execute(
+            sql,
+            (
+                user_id,
+                room_id,
+                unthreaded_receipt_stream_ordering,
+                *receipts_args,
+                user_id,
+                room_id,
+                unthreaded_receipt_stream_ordering,
+            ),
+        )
+        for highlight_count, thread_id in txn:
+            _get_thread(thread_id).highlight_count += highlight_count
+
+        # For threads which were summarised we need to count actions since the last
+        # rotation.
+        thread_id_clause, thread_id_args = make_in_list_sql_clause(
+            self.database_engine, "thread_id", summarised_threads
+        )
+
+        # The (inclusive) event stream ordering that was previously summarised.
+        rotated_upto_stream_ordering = self.db_pool.simple_select_one_onecol_txn(
+            txn,
+            table="event_push_summary_stream_ordering",
+            keyvalues={},
+            retcol="stream_ordering",
+        )
+
+        unread_counts = self._get_notif_unread_count_for_user_room(
+            txn, room_id, user_id, rotated_upto_stream_ordering
+        )
+        for notif_count, unread_count, thread_id in unread_counts:
+            if thread_id not in summarised_threads:
+                continue
+
+            if thread_id == MAIN_TIMELINE:
+                counts.notify_count += notif_count
+                counts.unread_count += unread_count
+            elif thread_id in thread_counts:
+                thread_counts[thread_id].notify_count += notif_count
+                thread_counts[thread_id].unread_count += unread_count
+            else:
+                # Previous thread summaries of 0 are discarded above.
+                #
+                # TODO If empty summaries are deleted this can be removed.
+                thread_counts[thread_id] = NotifCounts(
+                    notify_count=notif_count,
+                    unread_count=unread_count,
+                    highlight_count=0,
+                )
 
         # Finally we need to count push actions that aren't included in the
         # summary returned above. This might be due to recent events that haven't
         # been summarised yet or the summary is out of date due to a recent read
         # receipt.
-        start_unread_stream_ordering = max(
-            receipt_stream_ordering, summary_stream_ordering
-        )
-        notify_count, unread_count = self._get_notif_unread_count_for_user_room(
-            txn, room_id, user_id, start_unread_stream_ordering
+        sql = f"""
+            SELECT
+                COUNT(CASE WHEN notif = 1 THEN 1 END),
+                COUNT(CASE WHEN unread = 1 THEN 1 END),
+                thread_id
+            FROM event_push_actions
+            LEFT JOIN (
+                SELECT thread_id, MAX(stream_ordering) AS threaded_receipt_stream_ordering
+                FROM receipts_linearized
+                LEFT JOIN events USING (room_id, event_id)
+                WHERE
+                    user_id = ?
+                    AND room_id = ?
+                    AND stream_ordering > ?
+                    AND {receipt_types_clause}
+                GROUP BY thread_id
+            ) AS receipts USING (thread_id)
+            WHERE user_id = ?
+                AND room_id = ?
+                AND stream_ordering > COALESCE(threaded_receipt_stream_ordering, ?)
+                AND NOT {thread_id_clause}
+            GROUP BY thread_id
+        """
+        txn.execute(
+            sql,
+            (
+                user_id,
+                room_id,
+                unthreaded_receipt_stream_ordering,
+                *receipts_args,
+                user_id,
+                room_id,
+                unthreaded_receipt_stream_ordering,
+                *thread_id_args,
+            ),
         )
+        for notif_count, unread_count, thread_id in txn:
+            counts = _get_thread(thread_id)
+            counts.notify_count += notif_count
+            counts.unread_count += unread_count
 
-        counts.notify_count += notify_count
-        counts.unread_count += unread_count
-
-        return counts
+        return RoomNotifCounts(main_counts, thread_counts)
 
     def _get_notif_unread_count_for_user_room(
         self,
@@ -540,7 +708,8 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
         user_id: str,
         stream_ordering: int,
         max_stream_ordering: Optional[int] = None,
-    ) -> Tuple[int, int]:
+        thread_id: Optional[str] = None,
+    ) -> List[Tuple[int, int, str]]:
         """Returns the notify and unread counts from `event_push_actions` for
         the given user/room in the given range.
 
@@ -554,45 +723,55 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
             stream_ordering: The (exclusive) minimum stream ordering to consider.
             max_stream_ordering: The (inclusive) maximum stream ordering to consider.
                 If this is not given, then no maximum is applied.
+            thread_id: The thread ID to fetch unread counts for. If this is not provided
+                then the results for *all* threads is returned.
+
+                Note that if this is provided the resulting list will only have 0 or
+                1 tuples in it.
 
         Return:
-            A tuple of the notif count and unread count in the given range.
+            A tuple of the notif count and unread count in the given range for
+            each thread.
         """
 
         # If there have been no events in the room since the stream ordering,
         # there can't be any push actions either.
         if not self._events_stream_cache.has_entity_changed(room_id, stream_ordering):
-            return 0, 0
+            return []
 
-        clause = ""
+        stream_ordering_clause = ""
         args = [user_id, room_id, stream_ordering]
         if max_stream_ordering is not None:
-            clause = "AND ea.stream_ordering <= ?"
+            stream_ordering_clause = "AND ea.stream_ordering <= ?"
             args.append(max_stream_ordering)
 
             # If the max stream ordering is less than the min stream ordering,
             # then obviously there are zero push actions in that range.
             if max_stream_ordering <= stream_ordering:
-                return 0, 0
+                return []
+
+        # Either limit the results to a specific thread or fetch all threads.
+        thread_id_clause = ""
+        if thread_id is not None:
+            thread_id_clause = "AND thread_id = ?"
+            args.append(thread_id)
 
         sql = f"""
             SELECT
                COUNT(CASE WHEN notif = 1 THEN 1 END),
-               COUNT(CASE WHEN unread = 1 THEN 1 END)
-             FROM event_push_actions ea
-             WHERE user_id = ?
+               COUNT(CASE WHEN unread = 1 THEN 1 END),
+               thread_id
+            FROM event_push_actions ea
+            WHERE user_id = ?
                AND room_id = ?
                AND ea.stream_ordering > ?
-               {clause}
+               {stream_ordering_clause}
+               {thread_id_clause}
+            GROUP BY thread_id
         """
 
         txn.execute(sql, args)
-        row = txn.fetchone()
-
-        if row:
-            return cast(Tuple[int, int], row)
-
-        return 0, 0
+        return cast(List[Tuple[int, int, str]], txn.fetchall())
 
     async def get_push_action_users_in_range(
         self, min_stream_ordering: int, max_stream_ordering: int
@@ -609,7 +788,7 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
 
     def _get_receipts_by_room_txn(
         self, txn: LoggingTransaction, user_id: str
-    ) -> Dict[str, int]:
+    ) -> Dict[str, _RoomReceipt]:
         """
         Generate a map of room ID to the latest stream ordering that has been
         read by the given user.
@@ -619,7 +798,8 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
             user_id: The user to fetch receipts for.
 
         Returns:
-            A map of room ID to stream ordering for all rooms the user has a receipt in.
+            A map including all rooms the user is in with a receipt. It maps
+            room IDs to _RoomReceipt instances
         """
         receipt_types_clause, args = make_in_list_sql_clause(
             self.database_engine,
@@ -628,20 +808,26 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
         )
 
         sql = f"""
-            SELECT room_id, MAX(stream_ordering)
+            SELECT room_id, thread_id, MAX(stream_ordering)
             FROM receipts_linearized
             INNER JOIN events USING (room_id, event_id)
             WHERE {receipt_types_clause}
             AND user_id = ?
-            GROUP BY room_id
+            GROUP BY room_id, thread_id
         """
 
         args.extend((user_id,))
         txn.execute(sql, args)
-        return {
-            room_id: latest_stream_ordering
-            for room_id, latest_stream_ordering in txn.fetchall()
-        }
+
+        result: Dict[str, _RoomReceipt] = {}
+        for room_id, thread_id, stream_ordering in txn:
+            room_receipt = result.setdefault(room_id, _RoomReceipt())
+            if thread_id is None:
+                room_receipt.unthreaded_stream_ordering = stream_ordering
+            else:
+                room_receipt.threaded_stream_ordering[thread_id] = stream_ordering
+
+        return result
 
     async def get_unread_push_actions_for_user_in_range_for_http(
         self,
@@ -674,9 +860,10 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
 
         def get_push_actions_txn(
             txn: LoggingTransaction,
-        ) -> List[Tuple[str, str, int, str, bool]]:
+        ) -> List[Tuple[str, str, str, int, str, bool]]:
             sql = """
-                SELECT ep.event_id, ep.room_id, ep.stream_ordering, ep.actions, ep.highlight
+                SELECT ep.event_id, ep.room_id, ep.thread_id, ep.stream_ordering,
+                    ep.actions, ep.highlight
                 FROM event_push_actions AS ep
                 WHERE
                     ep.user_id = ?
@@ -686,7 +873,7 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
                 ORDER BY ep.stream_ordering ASC LIMIT ?
             """
             txn.execute(sql, (user_id, min_stream_ordering, max_stream_ordering, limit))
-            return cast(List[Tuple[str, str, int, str, bool]], txn.fetchall())
+            return cast(List[Tuple[str, str, str, int, str, bool]], txn.fetchall())
 
         push_actions = await self.db_pool.runInteraction(
             "get_unread_push_actions_for_user_in_range_http", get_push_actions_txn
@@ -699,10 +886,10 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
                 stream_ordering=stream_ordering,
                 actions=_deserialize_action(actions, highlight),
             )
-            for event_id, room_id, stream_ordering, actions, highlight in push_actions
-            # Only include push actions with a stream ordering after any receipt, or without any
-            # receipt present (invited to but never read rooms).
-            if stream_ordering > receipts_by_room.get(room_id, 0)
+            for event_id, room_id, thread_id, stream_ordering, actions, highlight in push_actions
+            if receipts_by_room.get(room_id, MISSING_ROOM_RECEIPT).is_unread(
+                thread_id, stream_ordering
+            )
         ]
 
         # Now sort it so it's ordered correctly, since currently it will
@@ -746,10 +933,10 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
 
         def get_push_actions_txn(
             txn: LoggingTransaction,
-        ) -> List[Tuple[str, str, int, str, bool, int]]:
+        ) -> List[Tuple[str, str, str, int, str, bool, int]]:
             sql = """
-                SELECT ep.event_id, ep.room_id, ep.stream_ordering, ep.actions,
-                    ep.highlight, e.received_ts
+                SELECT ep.event_id, ep.room_id, ep.thread_id, ep.stream_ordering,
+                    ep.actions, ep.highlight, e.received_ts
                 FROM event_push_actions AS ep
                 INNER JOIN events AS e USING (room_id, event_id)
                 WHERE
@@ -760,7 +947,7 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
                 ORDER BY ep.stream_ordering DESC LIMIT ?
             """
             txn.execute(sql, (user_id, min_stream_ordering, max_stream_ordering, limit))
-            return cast(List[Tuple[str, str, int, str, bool, int]], txn.fetchall())
+            return cast(List[Tuple[str, str, str, int, str, bool, int]], txn.fetchall())
 
         push_actions = await self.db_pool.runInteraction(
             "get_unread_push_actions_for_user_in_range_email", get_push_actions_txn
@@ -775,10 +962,10 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
                 actions=_deserialize_action(actions, highlight),
                 received_ts=received_ts,
             )
-            for event_id, room_id, stream_ordering, actions, highlight, received_ts in push_actions
-            # Only include push actions with a stream ordering after any receipt, or without any
-            # receipt present (invited to but never read rooms).
-            if stream_ordering > receipts_by_room.get(room_id, 0)
+            for event_id, room_id, thread_id, stream_ordering, actions, highlight, received_ts in push_actions
+            if receipts_by_room.get(room_id, MISSING_ROOM_RECEIPT).is_unread(
+                thread_id, stream_ordering
+            )
         ]
 
         # Now sort it so it's ordered correctly, since currently it will
@@ -1102,7 +1289,7 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
         )
 
         sql = """
-            SELECT r.stream_id, r.room_id, r.user_id, e.stream_ordering
+            SELECT r.stream_id, r.room_id, r.user_id, r.thread_id, e.stream_ordering
             FROM receipts_linearized AS r
             INNER JOIN events AS e USING (event_id)
             WHERE ? < r.stream_id AND r.stream_id <= ? AND user_id LIKE ?
@@ -1123,55 +1310,86 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
                 limit,
             ),
         )
-        rows = cast(List[Tuple[int, str, str, int]], txn.fetchall())
+        rows = cast(List[Tuple[int, str, str, Optional[str], int]], txn.fetchall())
 
         # For each new read receipt we delete push actions from before it and
         # recalculate the summary.
-        for _, room_id, user_id, stream_ordering in rows:
+        #
+        # Care must be taken of whether it is a threaded or unthreaded receipt.
+        for _, room_id, user_id, thread_id, stream_ordering in rows:
             # Only handle our own read receipts.
             if not self.hs.is_mine_id(user_id):
                 continue
 
+            thread_clause = ""
+            thread_args: Tuple = ()
+            if thread_id is not None:
+                thread_clause = "AND thread_id = ?"
+                thread_args = (thread_id,)
+
+            # For each new read receipt we delete push actions from before it and
+            # recalculate the summary.
             txn.execute(
-                """
+                f"""
                 DELETE FROM event_push_actions
                 WHERE room_id = ?
                     AND user_id = ?
                     AND stream_ordering <= ?
                     AND highlight = 0
+                    {thread_clause}
                 """,
-                (room_id, user_id, stream_ordering),
+                (room_id, user_id, stream_ordering, *thread_args),
             )
 
             # Fetch the notification counts between the stream ordering of the
             # latest receipt and what was previously summarised.
-            notif_count, unread_count = self._get_notif_unread_count_for_user_room(
-                txn, room_id, user_id, stream_ordering, old_rotate_stream_ordering
+            unread_counts = self._get_notif_unread_count_for_user_room(
+                txn,
+                room_id,
+                user_id,
+                stream_ordering,
+                old_rotate_stream_ordering,
+                thread_id,
             )
 
-            # First ensure that the existing rows have an updated thread_id field.
-            txn.execute(
-                """
-                UPDATE event_push_summary
-                SET thread_id = ?
-                WHERE room_id = ? AND user_id = ? AND thread_id is NULL
-                """,
-                ("main", room_id, user_id),
-            )
+            # For an unthreaded receipt, mark the summary for all threads in the room
+            # as cleared.
+            if thread_id is None:
+                self.db_pool.simple_update_txn(
+                    txn,
+                    table="event_push_summary",
+                    keyvalues={"user_id": user_id, "room_id": room_id},
+                    updatevalues={
+                        "notif_count": 0,
+                        "unread_count": 0,
+                        "stream_ordering": old_rotate_stream_ordering,
+                        "last_receipt_stream_ordering": stream_ordering,
+                    },
+                )
 
-            # Replace the previous summary with the new counts.
-            #
-            # TODO(threads): Upsert per-thread instead of setting them all to main.
-            self.db_pool.simple_upsert_txn(
+            # For a threaded receipt, we *always* want to update that receipt,
+            # event if there are no new notifications in that thread. This ensures
+            # the stream_ordering & last_receipt_stream_ordering are updated.
+            elif not unread_counts:
+                unread_counts = [(0, 0, thread_id)]
+
+            # Then any updated threads get their notification count and unread
+            # count updated.
+            self.db_pool.simple_update_many_txn(
                 txn,
                 table="event_push_summary",
-                keyvalues={"room_id": room_id, "user_id": user_id, "thread_id": "main"},
-                values={
-                    "notif_count": notif_count,
-                    "unread_count": unread_count,
-                    "stream_ordering": old_rotate_stream_ordering,
-                    "last_receipt_stream_ordering": stream_ordering,
-                },
+                key_names=("room_id", "user_id", "thread_id"),
+                key_values=[(room_id, user_id, row[2]) for row in unread_counts],
+                value_names=(
+                    "notif_count",
+                    "unread_count",
+                    "stream_ordering",
+                    "last_receipt_stream_ordering",
+                ),
+                value_values=[
+                    (row[0], row[1], old_rotate_stream_ordering, stream_ordering)
+                    for row in unread_counts
+                ],
             )
 
         # We always update `event_push_summary_last_receipt_stream_id` to
@@ -1259,23 +1477,23 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
 
         # Calculate the new counts that should be upserted into event_push_summary
         sql = """
-            SELECT user_id, room_id,
+            SELECT user_id, room_id, thread_id,
                 coalesce(old.%s, 0) + upd.cnt,
                 upd.stream_ordering
             FROM (
-                SELECT user_id, room_id, count(*) as cnt,
+                SELECT user_id, room_id, thread_id, count(*) as cnt,
                     max(ea.stream_ordering) as stream_ordering
                 FROM event_push_actions AS ea
-                LEFT JOIN event_push_summary AS old USING (user_id, room_id)
+                LEFT JOIN event_push_summary AS old USING (user_id, room_id, thread_id)
                 WHERE ? < ea.stream_ordering AND ea.stream_ordering <= ?
                     AND (
                         old.last_receipt_stream_ordering IS NULL
                         OR old.last_receipt_stream_ordering < ea.stream_ordering
                     )
                     AND %s = 1
-                GROUP BY user_id, room_id
+                GROUP BY user_id, room_id, thread_id
             ) AS upd
-            LEFT JOIN event_push_summary AS old USING (user_id, room_id)
+            LEFT JOIN event_push_summary AS old USING (user_id, room_id, thread_id)
         """
 
         # First get the count of unread messages.
@@ -1289,11 +1507,11 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
         # object because we might not have the same amount of rows in each of them. To do
         # this, we use a dict indexed on the user ID and room ID to make it easier to
         # populate.
-        summaries: Dict[Tuple[str, str], _EventPushSummary] = {}
+        summaries: Dict[Tuple[str, str, str], _EventPushSummary] = {}
         for row in txn:
-            summaries[(row[0], row[1])] = _EventPushSummary(
-                unread_count=row[2],
-                stream_ordering=row[3],
+            summaries[(row[0], row[1], row[2])] = _EventPushSummary(
+                unread_count=row[3],
+                stream_ordering=row[4],
                 notif_count=0,
             )
 
@@ -1304,48 +1522,36 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
         )
 
         for row in txn:
-            if (row[0], row[1]) in summaries:
-                summaries[(row[0], row[1])].notif_count = row[2]
+            if (row[0], row[1], row[2]) in summaries:
+                summaries[(row[0], row[1], row[2])].notif_count = row[3]
             else:
                 # Because the rules on notifying are different than the rules on marking
                 # a message unread, we might end up with messages that notify but aren't
                 # marked unread, so we might not have a summary for this (user, room)
                 # tuple to complete.
-                summaries[(row[0], row[1])] = _EventPushSummary(
+                summaries[(row[0], row[1], row[2])] = _EventPushSummary(
                     unread_count=0,
-                    stream_ordering=row[3],
-                    notif_count=row[2],
+                    stream_ordering=row[4],
+                    notif_count=row[3],
                 )
 
         logger.info("Rotating notifications, handling %d rows", len(summaries))
 
-        # Ensure that any updated threads have an updated thread_id.
-        txn.execute_batch(
-            """
-            UPDATE event_push_summary
-            SET thread_id = ?
-            WHERE room_id = ? AND user_id = ? AND thread_id is NULL
-            """,
-            [("main", room_id, user_id) for user_id, room_id in summaries],
-        )
-        self.db_pool.simple_update_many_txn(
-            txn,
-            table="event_push_summary",
-            key_names=("user_id", "room_id", "thread_id"),
-            key_values=[(user_id, room_id, None) for user_id, room_id in summaries],
-            value_names=("thread_id",),
-            value_values=[("main",) for _ in summaries],
-        )
-
-        # TODO(threads): Update on a per-thread basis.
         self.db_pool.simple_upsert_many_txn(
             txn,
             table="event_push_summary",
             key_names=("user_id", "room_id", "thread_id"),
-            key_values=[(user_id, room_id, "main") for user_id, room_id in summaries],
+            key_values=[
+                (user_id, room_id, thread_id)
+                for user_id, room_id, thread_id in summaries
+            ],
             value_names=("notif_count", "unread_count", "stream_ordering"),
             value_values=[
-                (summary.notif_count, summary.unread_count, summary.stream_ordering)
+                (
+                    summary.notif_count,
+                    summary.unread_count,
+                    summary.stream_ordering,
+                )
                 for summary in summaries.values()
             ],
         )
@@ -1356,7 +1562,10 @@ class EventPushActionsWorkerStore(ReceiptsWorkerStore, StreamWorkerStore, SQLBas
         )
 
     async def _remove_old_push_actions_that_have_rotated(self) -> None:
-        """Clear out old push actions that have been summarised."""
+        """
+        Clear out old push actions that have been summarised (and are older than
+        1 day ago).
+        """
 
         # We want to clear out anything that is older than a day that *has* already
         # been rotated.
diff --git a/synapse/storage/databases/main/events.py b/synapse/storage/databases/main/events.py
index 3e15827986..6698cbf664 100644
--- a/synapse/storage/databases/main/events.py
+++ b/synapse/storage/databases/main/events.py
@@ -35,7 +35,7 @@ import attr
 from prometheus_client import Counter
 
 import synapse.metrics
-from synapse.api.constants import EventContentFields, EventTypes
+from synapse.api.constants import EventContentFields, EventTypes, RelationTypes
 from synapse.api.errors import Codes, SynapseError
 from synapse.api.room_versions import RoomVersions
 from synapse.events import EventBase, relation_from_event
@@ -1616,7 +1616,7 @@ class PersistEventsStore:
                 )
 
                 # Remove from relations table.
-                self._handle_redact_relations(txn, event.redacts)
+                self._handle_redact_relations(txn, event.room_id, event.redacts)
 
         # Update the event_forward_extremities, event_backward_extremities and
         # event_edges tables.
@@ -1866,6 +1866,34 @@ class PersistEventsStore:
             },
         )
 
+        if relation.rel_type == RelationTypes.THREAD:
+            # Upsert into the threads table, but only overwrite the value if the
+            # new event is of a later topological order OR if the topological
+            # ordering is equal, but the stream ordering is later.
+            sql = """
+            INSERT INTO threads (room_id, thread_id, latest_event_id, topological_ordering, stream_ordering)
+            VALUES (?, ?, ?, ?, ?)
+            ON CONFLICT (room_id, thread_id)
+            DO UPDATE SET
+                latest_event_id = excluded.latest_event_id,
+                topological_ordering = excluded.topological_ordering,
+                stream_ordering = excluded.stream_ordering
+            WHERE
+                threads.topological_ordering <= excluded.topological_ordering AND
+                threads.stream_ordering < excluded.stream_ordering
+            """
+
+            txn.execute(
+                sql,
+                (
+                    event.room_id,
+                    relation.parent_id,
+                    event.event_id,
+                    event.depth,
+                    event.internal_metadata.stream_ordering,
+                ),
+            )
+
     def _handle_insertion_event(
         self, txn: LoggingTransaction, event: EventBase
     ) -> None:
@@ -1989,13 +2017,14 @@ class PersistEventsStore:
         txn.execute(sql, (batch_id,))
 
     def _handle_redact_relations(
-        self, txn: LoggingTransaction, redacted_event_id: str
+        self, txn: LoggingTransaction, room_id: str, redacted_event_id: str
     ) -> None:
         """Handles receiving a redaction and checking whether the redacted event
         has any relations which must be removed from the database.
 
         Args:
             txn
+            room_id: The room ID of the event that was redacted.
             redacted_event_id: The event that was redacted.
         """
 
@@ -2025,9 +2054,7 @@ class PersistEventsStore:
                 txn, self.store.get_thread_participated, (redacted_relates_to,)
             )
             self.store._invalidate_cache_and_stream(
-                txn,
-                self.store.get_mutual_event_relations_for_rel_type,
-                (redacted_relates_to,),
+                txn, self.store.get_threads, (room_id,)
             )
 
         self.db_pool.simple_delete_txn(
diff --git a/synapse/storage/databases/main/events_worker.py b/synapse/storage/databases/main/events_worker.py
index 7cdc9fe98f..7bc7f2f33e 100644
--- a/synapse/storage/databases/main/events_worker.py
+++ b/synapse/storage/databases/main/events_worker.py
@@ -374,7 +374,7 @@ class EventsWorkerStore(SQLBaseStore):
                 If there is a mismatch, behave as per allow_none.
 
         Returns:
-            The event, or None if the event was not found.
+            The event, or None if the event was not found and allow_none is `True`.
         """
         if not isinstance(event_id, str):
             raise TypeError("Invalid event event_id %r" % (event_id,))
@@ -474,7 +474,7 @@ class EventsWorkerStore(SQLBaseStore):
             return []
 
         # there may be duplicates so we cast the list to a set
-        event_entry_map = await self._get_events_from_cache_or_db(
+        event_entry_map = await self.get_unredacted_events_from_cache_or_db(
             set(event_ids), allow_rejected=allow_rejected
         )
 
@@ -509,7 +509,9 @@ class EventsWorkerStore(SQLBaseStore):
                     continue
 
                 redacted_event_id = entry.event.redacts
-                event_map = await self._get_events_from_cache_or_db([redacted_event_id])
+                event_map = await self.get_unredacted_events_from_cache_or_db(
+                    [redacted_event_id]
+                )
                 original_event_entry = event_map.get(redacted_event_id)
                 if not original_event_entry:
                     # we don't have the redacted event (or it was rejected).
@@ -588,11 +590,16 @@ class EventsWorkerStore(SQLBaseStore):
         return events
 
     @cancellable
-    async def _get_events_from_cache_or_db(
-        self, event_ids: Iterable[str], allow_rejected: bool = False
+    async def get_unredacted_events_from_cache_or_db(
+        self,
+        event_ids: Iterable[str],
+        allow_rejected: bool = False,
     ) -> Dict[str, EventCacheEntry]:
         """Fetch a bunch of events from the cache or the database.
 
+        Note that the events pulled by this function will not have any redactions
+        applied, and no guarantee is made about the ordering of the events returned.
+
         If events are pulled from the database, they will be cached for future lookups.
 
         Unknown events are omitted from the response.
@@ -1495,21 +1502,15 @@ class EventsWorkerStore(SQLBaseStore):
         Returns:
              a dict {event_id -> bool}
         """
-        # if the event cache contains the event, obviously we've seen it.
-
-        cache_results = {
-            event_id
-            for event_id in event_ids
-            if await self._get_event_cache.contains((event_id,))
-        }
-        results = dict.fromkeys(cache_results, True)
-        remaining = [
-            event_id for event_id in event_ids if event_id not in cache_results
-        ]
-        if not remaining:
-            return results
+        # TODO: We used to query the _get_event_cache here as a fast-path before
+        #  hitting the database. For if an event were in the cache, we've presumably
+        #  seen it before.
+        #
+        #  But this is currently an invalid assumption due to the _get_event_cache
+        #  not being invalidated when purging events from a room. The optimisation can
+        #  be re-added after https://github.com/matrix-org/synapse/issues/13476
 
-        def have_seen_events_txn(txn: LoggingTransaction) -> None:
+        def have_seen_events_txn(txn: LoggingTransaction) -> Dict[str, bool]:
             # we deliberately do *not* query the database for room_id, to make the
             # query an index-only lookup on `events_event_id_key`.
             #
@@ -1517,16 +1518,17 @@ class EventsWorkerStore(SQLBaseStore):
 
             sql = "SELECT event_id FROM events AS e WHERE "
             clause, args = make_in_list_sql_clause(
-                txn.database_engine, "e.event_id", remaining
+                txn.database_engine, "e.event_id", event_ids
             )
             txn.execute(sql + clause, args)
             found_events = {eid for eid, in txn}
 
             # ... and then we can update the results for each key
-            results.update({eid: (eid in found_events) for eid in remaining})
+            return {eid: (eid in found_events) for eid in event_ids}
 
-        await self.db_pool.runInteraction("have_seen_events", have_seen_events_txn)
-        return results
+        return await self.db_pool.runInteraction(
+            "have_seen_events", have_seen_events_txn
+        )
 
     @cached(max_entries=100000, tree=True)
     async def have_seen_event(self, room_id: str, event_id: str) -> bool:
diff --git a/synapse/storage/databases/main/push_rule.py b/synapse/storage/databases/main/push_rule.py
index ed17b2e70c..51416b2236 100644
--- a/synapse/storage/databases/main/push_rule.py
+++ b/synapse/storage/databases/main/push_rule.py
@@ -29,7 +29,6 @@ from typing import (
 )
 
 from synapse.api.errors import StoreError
-from synapse.config.homeserver import ExperimentalConfig
 from synapse.replication.slave.storage._slaved_id_tracker import SlavedIdTracker
 from synapse.storage._base import SQLBaseStore
 from synapse.storage.database import (
@@ -63,9 +62,7 @@ logger = logging.getLogger(__name__)
 
 
 def _load_rules(
-    rawrules: List[JsonDict],
-    enabled_map: Dict[str, bool],
-    experimental_config: ExperimentalConfig,
+    rawrules: List[JsonDict], enabled_map: Dict[str, bool]
 ) -> FilteredPushRules:
     """Take the DB rows returned from the DB and convert them into a full
     `FilteredPushRules` object.
@@ -81,16 +78,9 @@ def _load_rules(
         for rawrule in rawrules
     ]
 
-    push_rules = PushRules(
-        ruleslist,
-    )
+    push_rules = PushRules(ruleslist)
 
-    filtered_rules = FilteredPushRules(
-        push_rules,
-        enabled_map,
-        msc3786_enabled=experimental_config.msc3786_enabled,
-        msc3772_enabled=experimental_config.msc3772_enabled,
-    )
+    filtered_rules = FilteredPushRules(push_rules, enabled_map)
 
     return filtered_rules
 
@@ -170,7 +160,7 @@ class PushRulesWorkerStore(
 
         enabled_map = await self.get_push_rules_enabled_for_user(user_id)
 
-        return _load_rules(rows, enabled_map, self.hs.config.experimental)
+        return _load_rules(rows, enabled_map)
 
     async def get_push_rules_enabled_for_user(self, user_id: str) -> Dict[str, bool]:
         results = await self.db_pool.simple_select_list(
@@ -229,9 +219,7 @@ class PushRulesWorkerStore(
         results: Dict[str, FilteredPushRules] = {}
 
         for user_id, rules in raw_rules.items():
-            results[user_id] = _load_rules(
-                rules, enabled_map_by_user.get(user_id, {}), self.hs.config.experimental
-            )
+            results[user_id] = _load_rules(rules, enabled_map_by_user.get(user_id, {}))
 
         return results
 
diff --git a/synapse/storage/databases/main/receipts.py b/synapse/storage/databases/main/receipts.py
index 246f78ac1f..dc6989527e 100644
--- a/synapse/storage/databases/main/receipts.py
+++ b/synapse/storage/databases/main/receipts.py
@@ -418,6 +418,8 @@ class ReceiptsWorkerStore(SQLBaseStore):
             receipt_type = event_entry.setdefault(row["receipt_type"], {})
 
             receipt_type[row["user_id"]] = db_to_json(row["data"])
+            if row["thread_id"]:
+                receipt_type[row["user_id"]]["thread_id"] = row["thread_id"]
 
         results = {
             room_id: [results[room_id]] if room_id in results else []
diff --git a/synapse/storage/databases/main/relations.py b/synapse/storage/databases/main/relations.py
index 898947af95..1de62ee9df 100644
--- a/synapse/storage/databases/main/relations.py
+++ b/synapse/storage/databases/main/relations.py
@@ -14,6 +14,7 @@
 
 import logging
 from typing import (
+    TYPE_CHECKING,
     Collection,
     Dict,
     FrozenSet,
@@ -28,19 +29,48 @@ from typing import (
 
 import attr
 
-from synapse.api.constants import RelationTypes
+from synapse.api.constants import MAIN_TIMELINE, RelationTypes
+from synapse.api.errors import SynapseError
 from synapse.events import EventBase
 from synapse.storage._base import SQLBaseStore
-from synapse.storage.database import LoggingTransaction, make_in_list_sql_clause
+from synapse.storage.database import (
+    DatabasePool,
+    LoggingDatabaseConnection,
+    LoggingTransaction,
+    make_in_list_sql_clause,
+)
 from synapse.storage.databases.main.stream import generate_pagination_where_clause
 from synapse.storage.engines import PostgresEngine
 from synapse.types import JsonDict, RoomStreamToken, StreamKeyType, StreamToken
 from synapse.util.caches.descriptors import cached, cachedList
 
+if TYPE_CHECKING:
+    from synapse.server import HomeServer
+
 logger = logging.getLogger(__name__)
 
 
 @attr.s(slots=True, frozen=True, auto_attribs=True)
+class ThreadsNextBatch:
+    topological_ordering: int
+    stream_ordering: int
+
+    def __str__(self) -> str:
+        return f"{self.topological_ordering}_{self.stream_ordering}"
+
+    @classmethod
+    def from_string(cls, string: str) -> "ThreadsNextBatch":
+        """
+        Creates a ThreadsNextBatch from its textual representation.
+        """
+        try:
+            keys = (int(s) for s in string.split("_"))
+            return cls(*keys)
+        except Exception:
+            raise SynapseError(400, "Invalid threads token")
+
+
+@attr.s(slots=True, frozen=True, auto_attribs=True)
 class _RelatedEvent:
     """
     Contains enough information about a related event in order to properly filter
@@ -56,6 +86,76 @@ class _RelatedEvent:
 
 
 class RelationsWorkerStore(SQLBaseStore):
+    def __init__(
+        self,
+        database: DatabasePool,
+        db_conn: LoggingDatabaseConnection,
+        hs: "HomeServer",
+    ):
+        super().__init__(database, db_conn, hs)
+
+        self.db_pool.updates.register_background_update_handler(
+            "threads_backfill", self._backfill_threads
+        )
+
+    async def _backfill_threads(self, progress: JsonDict, batch_size: int) -> int:
+        """Backfill the threads table."""
+
+        def threads_backfill_txn(txn: LoggingTransaction) -> int:
+            last_thread_id = progress.get("last_thread_id", "")
+
+            # Get the latest event in each thread by topo ordering / stream ordering.
+            #
+            # Note that the MAX(event_id) is needed to abide by the rules of group by,
+            # but doesn't actually do anything since there should only be a single event
+            # ID per topo/stream ordering pair.
+            sql = f"""
+            SELECT room_id, relates_to_id, MAX(topological_ordering), MAX(stream_ordering), MAX(event_id)
+            FROM event_relations
+            INNER JOIN events USING (event_id)
+            WHERE
+                relates_to_id > ? AND
+                relation_type = '{RelationTypes.THREAD}'
+            GROUP BY room_id, relates_to_id
+            ORDER BY relates_to_id
+            LIMIT ?
+            """
+            txn.execute(sql, (last_thread_id, batch_size))
+
+            # No more rows to process.
+            rows = txn.fetchall()
+            if not rows:
+                return 0
+
+            # Insert the rows into the threads table. If a matching thread already exists,
+            # assume it is from a newer event.
+            sql = """
+            INSERT INTO threads (room_id, thread_id, topological_ordering, stream_ordering, latest_event_id)
+            VALUES %s
+            ON CONFLICT (room_id, thread_id)
+            DO NOTHING
+            """
+            if isinstance(txn.database_engine, PostgresEngine):
+                txn.execute_values(sql % ("?",), rows, fetch=False)
+            else:
+                txn.execute_batch(sql % ("(?, ?, ?, ?, ?)",), rows)
+
+            # Mark the progress.
+            self.db_pool.updates._background_update_progress_txn(
+                txn, "threads_backfill", {"last_thread_id": rows[-1][1]}
+            )
+
+            return txn.rowcount
+
+        result = await self.db_pool.runInteraction(
+            "threads_backfill", threads_backfill_txn
+        )
+
+        if not result:
+            await self.db_pool.updates._end_background_update("threads_backfill")
+
+        return result
+
     @cached(uncached_args=("event",), tree=True)
     async def get_relations_for_event(
         self,
@@ -384,12 +484,11 @@ class RelationsWorkerStore(SQLBaseStore):
             the event will map to None.
         """
 
-        # We only allow edits for `m.room.message` events that have the same sender
-        # and event type. We can't assert these things during regular event auth so
-        # we have to do the checks post hoc.
+        # We only allow edits for events that have the same sender and event type.
+        # We can't assert these things during regular event auth so we have to do
+        # the checks post hoc.
 
-        # Fetches latest edit that has the same type and sender as the
-        # original, and is an `m.room.message`.
+        # Fetches latest edit that has the same type and sender as the original.
         if isinstance(self.database_engine, PostgresEngine):
             # The `DISTINCT ON` clause will pick the *first* row it encounters,
             # so ordering by origin server ts + event ID desc will ensure we get
@@ -405,7 +504,6 @@ class RelationsWorkerStore(SQLBaseStore):
                 WHERE
                     %s
                     AND relation_type = ?
-                    AND edit.type = 'm.room.message'
                 ORDER by original.event_id DESC, edit.origin_server_ts DESC, edit.event_id DESC
             """
         else:
@@ -424,7 +522,6 @@ class RelationsWorkerStore(SQLBaseStore):
                 WHERE
                     %s
                     AND relation_type = ?
-                    AND edit.type = 'm.room.message'
                 ORDER by edit.origin_server_ts, edit.event_id
             """
 
@@ -779,57 +876,192 @@ class RelationsWorkerStore(SQLBaseStore):
             "get_if_user_has_annotated_event", _get_if_user_has_annotated_event
         )
 
-    @cached(iterable=True)
-    async def get_mutual_event_relations_for_rel_type(
-        self, event_id: str, relation_type: str
-    ) -> Set[Tuple[str, str]]:
-        raise NotImplementedError()
+    @cached(tree=True)
+    async def get_threads(
+        self,
+        room_id: str,
+        limit: int = 5,
+        from_token: Optional[ThreadsNextBatch] = None,
+    ) -> Tuple[List[str], Optional[ThreadsNextBatch]]:
+        """Get a list of thread IDs, ordered by topological ordering of their
+        latest reply.
+
+        Args:
+            room_id: The room the event belongs to.
+            limit: Only fetch the most recent `limit` threads.
+            from_token: Fetch rows from a previous next_batch, or from the start if None.
+
+        Returns:
+            A tuple of:
+                A list of thread root event IDs.
+
+                The next_batch, if one exists.
+        """
+        # Generate the pagination clause, if necessary.
+        #
+        # Find any threads where the latest reply is equal / before the last
+        # thread's topo ordering and earlier in stream ordering.
+        pagination_clause = ""
+        pagination_args: tuple = ()
+        if from_token:
+            pagination_clause = "AND topological_ordering <= ? AND stream_ordering < ?"
+            pagination_args = (
+                from_token.topological_ordering,
+                from_token.stream_ordering,
+            )
 
-    @cachedList(
-        cached_method_name="get_mutual_event_relations_for_rel_type",
-        list_name="relation_types",
-    )
-    async def get_mutual_event_relations(
-        self, event_id: str, relation_types: Collection[str]
-    ) -> Dict[str, Set[Tuple[str, str]]]:
+        sql = f"""
+            SELECT thread_id, topological_ordering, stream_ordering
+            FROM threads
+            WHERE
+                room_id = ?
+                {pagination_clause}
+            ORDER BY topological_ordering DESC, stream_ordering DESC
+            LIMIT ?
+        """
+
+        def _get_threads_txn(
+            txn: LoggingTransaction,
+        ) -> Tuple[List[str], Optional[ThreadsNextBatch]]:
+            txn.execute(sql, (room_id, *pagination_args, limit + 1))
+
+            rows = cast(List[Tuple[str, int, int]], txn.fetchall())
+            thread_ids = [r[0] for r in rows]
+
+            # If there are more events, generate the next pagination key from the
+            # last thread which will be returned.
+            next_token = None
+            if len(thread_ids) > limit:
+                last_topo_id = rows[-2][1]
+                last_stream_id = rows[-2][2]
+                next_token = ThreadsNextBatch(last_topo_id, last_stream_id)
+
+            return thread_ids[:limit], next_token
+
+        return await self.db_pool.runInteraction("get_threads", _get_threads_txn)
+
+    @cached()
+    async def get_thread_id(self, event_id: str) -> str:
         """
-        Fetch event metadata for events which related to the same event as the given event.
+        Get the thread ID for an event. This considers multi-level relations,
+        e.g. an annotation to an event which is part of a thread.
+
+        It only searches up the relations tree, i.e. it only searches for events
+        which the given event is related to (and which those events are related
+        to, etc.)
+
+        Given the following DAG:
+
+            A <---[m.thread]-- B <--[m.annotation]-- C
+            ^
+            |--[m.reference]-- D <--[m.annotation]-- E
+
+        get_thread_id(X) considers events B and C as part of thread A.
 
-        If the given event has no relation information, returns an empty dictionary.
+        See also get_thread_id_for_receipts.
 
         Args:
-            event_id: The event ID which is targeted by relations.
-            relation_types: The relation types to check for mutual relations.
+            event_id: The event ID to fetch the thread ID for.
 
         Returns:
-            A dictionary of relation type to:
-                A set of tuples of:
-                    The sender
-                    The event type
+            The event ID of the root event in the thread, if this event is part
+            of a thread. "main", otherwise.
         """
-        rel_type_sql, rel_type_args = make_in_list_sql_clause(
-            self.database_engine, "relation_type", relation_types
-        )
 
-        sql = f"""
-            SELECT DISTINCT relation_type, sender, type FROM event_relations
-            INNER JOIN events USING (event_id)
-            WHERE relates_to_id = ? AND {rel_type_sql}
+        # Recurse event relations up to the *root* event, then search that chain
+        # of relations for a thread relation. If one is found, the root event is
+        # returned.
+        #
+        # Note that this should only ever find 0 or 1 entries since it is invalid
+        # for an event to have a thread relation to an event which also has a
+        # relation.
+        sql = """
+            WITH RECURSIVE related_events AS (
+                SELECT event_id, relates_to_id, relation_type, 0 depth
+                FROM event_relations
+                WHERE event_id = ?
+                UNION SELECT e.event_id, e.relates_to_id, e.relation_type, depth + 1
+                FROM event_relations e
+                INNER JOIN related_events r ON r.relates_to_id = e.event_id
+                WHERE depth <= 3
+            )
+            SELECT relates_to_id FROM related_events
+            WHERE relation_type = 'm.thread'
+            ORDER BY depth DESC
+            LIMIT 1;
         """
 
-        def _get_event_relations(
-            txn: LoggingTransaction,
-        ) -> Dict[str, Set[Tuple[str, str]]]:
-            txn.execute(sql, [event_id] + rel_type_args)
-            result: Dict[str, Set[Tuple[str, str]]] = {
-                rel_type: set() for rel_type in relation_types
-            }
-            for rel_type, sender, type in txn.fetchall():
-                result[rel_type].add((sender, type))
-            return result
+        def _get_thread_id(txn: LoggingTransaction) -> str:
+            txn.execute(sql, (event_id,))
+            row = txn.fetchone()
+            if row:
+                return row[0]
+
+            # If no thread was found, it is part of the main timeline.
+            return MAIN_TIMELINE
+
+        return await self.db_pool.runInteraction("get_thread_id", _get_thread_id)
+
+    @cached()
+    async def get_thread_id_for_receipts(self, event_id: str) -> str:
+        """
+        Get the thread ID for an event by traversing to the top-most related event
+        and confirming any children events form a thread.
+
+        Given the following DAG:
+
+            A <---[m.thread]-- B <--[m.annotation]-- C
+            ^
+            |--[m.reference]-- D <--[m.annotation]-- E
+
+        get_thread_id_for_receipts(X) considers events A, B, C, D, and E as part
+        of thread A.
+
+        See also get_thread_id.
+
+        Args:
+            event_id: The event ID to fetch the thread ID for.
+
+        Returns:
+            The event ID of the root event in the thread, if this event is part
+            of a thread. "main", otherwise.
+        """
+
+        # Recurse event relations up to the *root* event, then search for any events
+        # related to that root node for a thread relation. If one is found, the
+        # root event is returned.
+        #
+        # Note that there cannot be thread relations in the middle of the chain since
+        # it is invalid for an event to have a thread relation to an event which also
+        # has a relation.
+        sql = """
+        SELECT relates_to_id FROM event_relations WHERE relates_to_id = COALESCE((
+            WITH RECURSIVE related_events AS (
+                SELECT event_id, relates_to_id, relation_type, 0 depth
+                FROM event_relations
+                WHERE event_id = ?
+                UNION SELECT e.event_id, e.relates_to_id, e.relation_type, depth + 1
+                FROM event_relations e
+                INNER JOIN related_events r ON r.relates_to_id = e.event_id
+                WHERE depth <= 3
+            )
+            SELECT relates_to_id FROM related_events
+            ORDER BY depth DESC
+            LIMIT 1
+        ), ?) AND relation_type = 'm.thread' LIMIT 1;
+        """
+
+        def _get_related_thread_id(txn: LoggingTransaction) -> str:
+            txn.execute(sql, (event_id, event_id))
+            row = txn.fetchone()
+            if row:
+                return row[0]
+
+            # If no thread was found, it is part of the main timeline.
+            return MAIN_TIMELINE
 
         return await self.db_pool.runInteraction(
-            "get_event_relations", _get_event_relations
+            "get_related_thread_id", _get_related_thread_id
         )
 
 
diff --git a/synapse/storage/databases/main/room.py b/synapse/storage/databases/main/room.py
index 7412bce255..e41c99027a 100644
--- a/synapse/storage/databases/main/room.py
+++ b/synapse/storage/databases/main/room.py
@@ -207,21 +207,30 @@ class RoomWorkerStore(CacheInvalidationWorkerStore):
 
     def _construct_room_type_where_clause(
         self, room_types: Union[List[Union[str, None]], None]
-    ) -> Tuple[Union[str, None], List[str]]:
+    ) -> Tuple[Union[str, None], list]:
         if not room_types:
             return None, []
-        else:
-            # We use None when we want get rooms without a type
-            is_null_clause = ""
-            if None in room_types:
-                is_null_clause = "OR room_type IS NULL"
-                room_types = [value for value in room_types if value is not None]
 
+        # Since None is used to represent a room without a type, care needs to
+        # be taken into account when constructing the where clause.
+        clauses = []
+        args: list = []
+
+        room_types_set = set(room_types)
+
+        # We use None to represent a room without a type.
+        if None in room_types_set:
+            clauses.append("room_type IS NULL")
+            room_types_set.remove(None)
+
+        # If there are other room types, generate the proper clause.
+        if room_types:
             list_clause, args = make_in_list_sql_clause(
-                self.database_engine, "room_type", room_types
+                self.database_engine, "room_type", room_types_set
             )
+            clauses.append(list_clause)
 
-            return f"({list_clause} {is_null_clause})", args
+        return f"({' OR '.join(clauses)})", args
 
     async def count_public_rooms(
         self,
@@ -241,14 +250,6 @@ class RoomWorkerStore(CacheInvalidationWorkerStore):
         def _count_public_rooms_txn(txn: LoggingTransaction) -> int:
             query_args = []
 
-            room_type_clause, args = self._construct_room_type_where_clause(
-                search_filter.get(PublicRoomsFilterFields.ROOM_TYPES, None)
-                if search_filter
-                else None
-            )
-            room_type_clause = f" AND {room_type_clause}" if room_type_clause else ""
-            query_args += args
-
             if network_tuple:
                 if network_tuple.appservice_id:
                     published_sql = """
@@ -268,6 +269,14 @@ class RoomWorkerStore(CacheInvalidationWorkerStore):
                     UNION SELECT room_id from appservice_room_list
             """
 
+            room_type_clause, args = self._construct_room_type_where_clause(
+                search_filter.get(PublicRoomsFilterFields.ROOM_TYPES, None)
+                if search_filter
+                else None
+            )
+            room_type_clause = f" AND {room_type_clause}" if room_type_clause else ""
+            query_args += args
+
             sql = f"""
                 SELECT
                     COUNT(*)
diff --git a/synapse/storage/databases/main/roommember.py b/synapse/storage/databases/main/roommember.py
index 2337289d88..2ed6ad754f 100644
--- a/synapse/storage/databases/main/roommember.py
+++ b/synapse/storage/databases/main/roommember.py
@@ -666,7 +666,7 @@ class RoomMemberWorkerStore(EventsWorkerStore):
         cached_method_name="get_rooms_for_user",
         list_name="user_ids",
     )
-    async def get_rooms_for_users(
+    async def _get_rooms_for_users(
         self, user_ids: Collection[str]
     ) -> Dict[str, FrozenSet[str]]:
         """A batched version of `get_rooms_for_user`.
@@ -697,6 +697,21 @@ class RoomMemberWorkerStore(EventsWorkerStore):
 
         return {key: frozenset(rooms) for key, rooms in user_rooms.items()}
 
+    async def get_rooms_for_users(
+        self, user_ids: Collection[str]
+    ) -> Dict[str, FrozenSet[str]]:
+        """A batched wrapper around `_get_rooms_for_users`, to prevent locking
+        other calls to `get_rooms_for_user` for large user lists.
+        """
+        all_user_rooms: Dict[str, FrozenSet[str]] = {}
+
+        # 250 users is pretty arbitrary but the data can be quite large if users
+        # are in many rooms.
+        for user_ids in batch_iter(user_ids, 250):
+            all_user_rooms.update(await self._get_rooms_for_users(user_ids))
+
+        return all_user_rooms
+
     @cached(max_entries=10000)
     async def does_pair_of_users_share_a_room(
         self, user_id: str, other_user_id: str
diff --git a/synapse/storage/databases/main/stream.py b/synapse/storage/databases/main/stream.py
index 530f04e149..09ce855aa8 100644
--- a/synapse/storage/databases/main/stream.py
+++ b/synapse/storage/databases/main/stream.py
@@ -357,6 +357,24 @@ def filter_to_clause(event_filter: Optional[Filter]) -> Tuple[str, List[str]]:
         )
         args.extend(event_filter.related_by_rel_types)
 
+    if event_filter.rel_types:
+        clauses.append(
+            "(%s)"
+            % " OR ".join(
+                "event_relation.relation_type = ?" for _ in event_filter.rel_types
+            )
+        )
+        args.extend(event_filter.rel_types)
+
+    if event_filter.not_rel_types:
+        clauses.append(
+            "((%s) OR event_relation.relation_type IS NULL)"
+            % " AND ".join(
+                "event_relation.relation_type != ?" for _ in event_filter.not_rel_types
+            )
+        )
+        args.extend(event_filter.not_rel_types)
+
     return " AND ".join(clauses), args
 
 
@@ -1024,28 +1042,31 @@ class StreamWorkerStore(EventsWorkerStore, SQLBaseStore):
             "after": {"event_ids": events_after, "token": end_token},
         }
 
-    async def get_all_new_events_stream(
-        self, from_id: int, current_id: int, limit: int, get_prev_content: bool = False
-    ) -> Tuple[int, List[EventBase], Dict[str, Optional[int]]]:
+    async def get_all_new_event_ids_stream(
+        self,
+        from_id: int,
+        current_id: int,
+        limit: int,
+    ) -> Tuple[int, Dict[str, Optional[int]]]:
         """Get all new events
 
-        Returns all events with from_id < stream_ordering <= current_id.
+        Returns all event ids with from_id < stream_ordering <= current_id.
 
         Args:
             from_id:  the stream_ordering of the last event we processed
             current_id:  the stream_ordering of the most recently processed event
             limit: the maximum number of events to return
-            get_prev_content: whether to fetch previous event content
 
         Returns:
-            A tuple of (next_id, events, event_to_received_ts), where `next_id`
+            A tuple of (next_id, event_to_received_ts), where `next_id`
             is the next value to pass as `from_id` (it will either be the
             stream_ordering of the last returned event, or, if fewer than `limit`
             events were found, the `current_id`). The `event_to_received_ts` is
-            a dictionary mapping event ID to the event `received_ts`.
+            a dictionary mapping event ID to the event `received_ts`, sorted by ascending
+            stream_ordering.
         """
 
-        def get_all_new_events_stream_txn(
+        def get_all_new_event_ids_stream_txn(
             txn: LoggingTransaction,
         ) -> Tuple[int, Dict[str, Optional[int]]]:
             sql = (
@@ -1070,15 +1091,10 @@ class StreamWorkerStore(EventsWorkerStore, SQLBaseStore):
             return upper_bound, event_to_received_ts
 
         upper_bound, event_to_received_ts = await self.db_pool.runInteraction(
-            "get_all_new_events_stream", get_all_new_events_stream_txn
-        )
-
-        events = await self.get_events_as_list(
-            event_to_received_ts.keys(),
-            get_prev_content=get_prev_content,
+            "get_all_new_event_ids_stream", get_all_new_event_ids_stream_txn
         )
 
-        return upper_bound, events, event_to_received_ts
+        return upper_bound, event_to_received_ts
 
     async def get_federation_out_pos(self, typ: str) -> int:
         if self._need_to_reset_federation_stream_positions:
@@ -1202,8 +1218,6 @@ class StreamWorkerStore(EventsWorkerStore, SQLBaseStore):
             `to_token`), or `limit` is zero.
         """
 
-        assert int(limit) >= 0
-
         # Tokens really represent positions between elements, but we use
         # the convention of pointing to the event before the gap. Hence
         # we have a bit of asymmetry when it comes to equalities.
@@ -1282,8 +1296,8 @@ class StreamWorkerStore(EventsWorkerStore, SQLBaseStore):
                 # Multiple labels could cause the same event to appear multiple times.
                 needs_distinct = True
 
-        # If there is a filter on relation_senders and relation_types join to the
-        # relations table.
+        # If there is a relation_senders and relation_types filter join to the
+        # relations table to get events related to the current event.
         if event_filter and (
             event_filter.related_by_senders or event_filter.related_by_rel_types
         ):
@@ -1298,6 +1312,13 @@ class StreamWorkerStore(EventsWorkerStore, SQLBaseStore):
                     LEFT JOIN events AS related_event ON (relation.event_id = related_event.event_id)
                 """
 
+        # If there is a not_rel_types filter join to the relations table to get
+        # the event's relation information.
+        if event_filter and (event_filter.rel_types or event_filter.not_rel_types):
+            join_clause += """
+                LEFT JOIN event_relations AS event_relation USING (event_id)
+            """
+
         if needs_distinct:
             select_keywords += " DISTINCT"
 
diff --git a/synapse/storage/schema/__init__.py b/synapse/storage/schema/__init__.py
index 4a5c947699..19dbf2da7f 100644
--- a/synapse/storage/schema/__init__.py
+++ b/synapse/storage/schema/__init__.py
@@ -90,9 +90,9 @@ Changes in SCHEMA_VERSION = 73;
 
 
 SCHEMA_COMPAT_VERSION = (
-    # The groups tables are no longer accessible, so synapses with SCHEMA_VERSION < 72
-    # could break.
-    72
+    # The threads_id column must exist for event_push_actions, event_push_summary,
+    # receipts_linearized, and receipts_graph.
+    73
 )
 """Limit on how far the synapse codebase can be rolled back without breaking db compat
 
diff --git a/synapse/storage/schema/main/delta/73/06thread_notifications_backfill.sql b/synapse/storage/schema/main/delta/73/06thread_notifications_backfill.sql
new file mode 100644
index 0000000000..0ffde9bbeb
--- /dev/null
+++ b/synapse/storage/schema/main/delta/73/06thread_notifications_backfill.sql
@@ -0,0 +1,29 @@
+/* Copyright 2022 The Matrix.org Foundation C.I.C
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+-- Forces the background updates from 06thread_notifications.sql to run in the
+-- foreground as code will now require those to be "done".
+
+DELETE FROM background_updates WHERE update_name = 'event_push_backfill_thread_id';
+
+-- Overwrite any null thread_id columns.
+UPDATE event_push_actions_staging SET thread_id = 'main' WHERE thread_id IS NULL;
+UPDATE event_push_actions SET thread_id = 'main' WHERE thread_id IS NULL;
+UPDATE event_push_summary SET thread_id = 'main' WHERE thread_id IS NULL;
+
+-- Do not run the event_push_summary_unique_index job if it is pending; the
+-- thread_id field will be made required.
+DELETE FROM background_updates WHERE update_name = 'event_push_summary_unique_index';
+DROP INDEX IF EXISTS event_push_summary_unique_index;
diff --git a/synapse/storage/schema/main/delta/73/07thread_notifications_not_null.sql.postgres b/synapse/storage/schema/main/delta/73/07thread_notifications_not_null.sql.postgres
new file mode 100644
index 0000000000..33674f8c62
--- /dev/null
+++ b/synapse/storage/schema/main/delta/73/07thread_notifications_not_null.sql.postgres
@@ -0,0 +1,19 @@
+/* Copyright 2022 The Matrix.org Foundation C.I.C
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+-- The columns can now be made non-nullable.
+ALTER TABLE event_push_actions_staging ALTER COLUMN thread_id SET NOT NULL;
+ALTER TABLE event_push_actions ALTER COLUMN thread_id SET NOT NULL;
+ALTER TABLE event_push_summary ALTER COLUMN thread_id SET NOT NULL;
diff --git a/synapse/storage/schema/main/delta/73/07thread_notifications_not_null.sql.sqlite b/synapse/storage/schema/main/delta/73/07thread_notifications_not_null.sql.sqlite
new file mode 100644
index 0000000000..5322ad77a4
--- /dev/null
+++ b/synapse/storage/schema/main/delta/73/07thread_notifications_not_null.sql.sqlite
@@ -0,0 +1,101 @@
+/* Copyright 2022 The Matrix.org Foundation C.I.C
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+-- SQLite doesn't support modifying columns to an existing table, so it must
+-- be recreated.
+
+-- Create the new tables.
+CREATE TABLE event_push_actions_staging_new (
+    event_id TEXT NOT NULL,
+    user_id TEXT NOT NULL,
+    actions TEXT NOT NULL,
+    notif SMALLINT NOT NULL,
+    highlight SMALLINT NOT NULL,
+    unread SMALLINT,
+    thread_id TEXT NOT NULL,
+    inserted_ts BIGINT
+);
+
+CREATE TABLE event_push_actions_new (
+    room_id TEXT NOT NULL,
+    event_id TEXT NOT NULL,
+    user_id TEXT NOT NULL,
+    profile_tag VARCHAR(32),
+    actions TEXT NOT NULL,
+    topological_ordering BIGINT,
+    stream_ordering BIGINT,
+    notif SMALLINT,
+    highlight SMALLINT,
+    unread SMALLINT,
+    thread_id TEXT NOT NULL,
+    CONSTRAINT event_id_user_id_profile_tag_uniqueness UNIQUE (room_id, event_id, user_id, profile_tag)
+);
+
+CREATE TABLE event_push_summary_new (
+    user_id TEXT NOT NULL,
+    room_id TEXT NOT NULL,
+    notif_count BIGINT NOT NULL,
+    stream_ordering BIGINT NOT NULL,
+    unread_count BIGINT,
+    last_receipt_stream_ordering BIGINT,
+    thread_id TEXT NOT NULL
+);
+
+-- Swap the indexes.
+DROP INDEX IF EXISTS event_push_actions_staging_id;
+CREATE INDEX event_push_actions_staging_id ON event_push_actions_staging_new(event_id);
+
+DROP INDEX IF EXISTS event_push_actions_room_id_user_id;
+DROP INDEX IF EXISTS event_push_actions_rm_tokens;
+DROP INDEX IF EXISTS event_push_actions_stream_ordering;
+DROP INDEX IF EXISTS event_push_actions_u_highlight;
+DROP INDEX IF EXISTS event_push_actions_highlights_index;
+CREATE INDEX event_push_actions_room_id_user_id on event_push_actions_new(room_id, user_id);
+CREATE INDEX event_push_actions_rm_tokens on event_push_actions_new( user_id, room_id, topological_ordering, stream_ordering );
+CREATE INDEX event_push_actions_stream_ordering on event_push_actions_new( stream_ordering, user_id );
+CREATE INDEX event_push_actions_u_highlight ON event_push_actions_new (user_id, stream_ordering);
+CREATE INDEX event_push_actions_highlights_index ON event_push_actions_new (user_id, room_id, topological_ordering, stream_ordering);
+
+-- Copy the data.
+INSERT INTO event_push_actions_staging_new (event_id, user_id, actions, notif, highlight, unread, thread_id, inserted_ts)
+    SELECT event_id, user_id, actions, notif, highlight, unread, thread_id, inserted_ts
+    FROM event_push_actions_staging;
+
+INSERT INTO event_push_actions_new (room_id, event_id, user_id, profile_tag, actions, topological_ordering, stream_ordering, notif, highlight, unread, thread_id)
+    SELECT room_id, event_id, user_id, profile_tag, actions, topological_ordering, stream_ordering, notif, highlight, unread, thread_id
+    FROM event_push_actions;
+
+INSERT INTO event_push_summary_new (user_id, room_id, notif_count, stream_ordering, unread_count, last_receipt_stream_ordering, thread_id)
+    SELECT user_id, room_id, notif_count, stream_ordering, unread_count, last_receipt_stream_ordering, thread_id
+    FROM event_push_summary;
+
+-- Drop the old tables.
+DROP TABLE event_push_actions_staging;
+DROP TABLE event_push_actions;
+DROP TABLE event_push_summary;
+
+-- Rename the tables.
+ALTER TABLE event_push_actions_staging_new RENAME TO event_push_actions_staging;
+ALTER TABLE event_push_actions_new RENAME TO event_push_actions;
+ALTER TABLE event_push_summary_new RENAME TO event_push_summary;
+
+-- Re-run background updates from 72/02event_push_actions_index.sql and
+-- 72/06thread_notifications.sql.
+INSERT INTO background_updates (ordering, update_name, progress_json) VALUES
+  (7307, 'event_push_summary_unique_index2', '{}')
+  ON CONFLICT (update_name) DO NOTHING;
+INSERT INTO background_updates (ordering, update_name, progress_json) VALUES
+  (7307, 'event_push_actions_stream_highlight_index', '{}')
+  ON CONFLICT (update_name) DO NOTHING;
diff --git a/synapse/storage/schema/main/delta/73/08thread_receipts_non_null.sql.postgres b/synapse/storage/schema/main/delta/73/08thread_receipts_non_null.sql.postgres
new file mode 100644
index 0000000000..3e0bc9e5eb
--- /dev/null
+++ b/synapse/storage/schema/main/delta/73/08thread_receipts_non_null.sql.postgres
@@ -0,0 +1,23 @@
+/* Copyright 2022 The Matrix.org Foundation C.I.C
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+-- Drop constraint on (room_id, receipt_type, user_id).
+
+-- Rebuild the unique constraint with the thread_id.
+ALTER TABLE receipts_linearized
+    DROP CONSTRAINT receipts_linearized_uniqueness;
+
+ALTER TABLE receipts_graph
+    DROP CONSTRAINT receipts_graph_uniqueness;
diff --git a/synapse/storage/schema/main/delta/73/08thread_receipts_non_null.sql.sqlite b/synapse/storage/schema/main/delta/73/08thread_receipts_non_null.sql.sqlite
new file mode 100644
index 0000000000..e664889fbc
--- /dev/null
+++ b/synapse/storage/schema/main/delta/73/08thread_receipts_non_null.sql.sqlite
@@ -0,0 +1,76 @@
+/* Copyright 2022 The Matrix.org Foundation C.I.C
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+-- Drop constraint on (room_id, receipt_type, user_id).
+--
+-- SQLite doesn't support modifying constraints to an existing table, so it must
+-- be recreated.
+
+-- Create the new tables.
+CREATE TABLE receipts_linearized_new (
+    stream_id BIGINT NOT NULL,
+    room_id TEXT NOT NULL,
+    receipt_type TEXT NOT NULL,
+    user_id TEXT NOT NULL,
+    event_id TEXT NOT NULL,
+    thread_id TEXT,
+    event_stream_ordering BIGINT,
+    data TEXT NOT NULL,
+    CONSTRAINT receipts_linearized_uniqueness_thread UNIQUE (room_id, receipt_type, user_id, thread_id)
+);
+
+CREATE TABLE receipts_graph_new (
+    room_id TEXT NOT NULL,
+    receipt_type TEXT NOT NULL,
+    user_id TEXT NOT NULL,
+    event_ids TEXT NOT NULL,
+    thread_id TEXT,
+    data TEXT NOT NULL,
+    CONSTRAINT receipts_graph_uniqueness_thread UNIQUE (room_id, receipt_type, user_id, thread_id)
+);
+
+-- Drop the old indexes.
+DROP INDEX IF EXISTS receipts_linearized_id;
+DROP INDEX IF EXISTS receipts_linearized_room_stream;
+DROP INDEX IF EXISTS receipts_linearized_user;
+
+-- Copy the data.
+INSERT INTO receipts_linearized_new (stream_id, room_id, receipt_type, user_id, event_id, data)
+    SELECT stream_id, room_id, receipt_type, user_id, event_id, data
+    FROM receipts_linearized;
+INSERT INTO receipts_graph_new (room_id, receipt_type, user_id, event_ids, data)
+    SELECT room_id, receipt_type, user_id, event_ids, data
+    FROM receipts_graph;
+
+-- Drop the old tables.
+DROP TABLE receipts_linearized;
+DROP TABLE receipts_graph;
+
+-- Rename the tables.
+ALTER TABLE receipts_linearized_new RENAME TO receipts_linearized;
+ALTER TABLE receipts_graph_new RENAME TO receipts_graph;
+
+-- Create the indices.
+CREATE INDEX receipts_linearized_id ON receipts_linearized( stream_id );
+CREATE INDEX receipts_linearized_room_stream ON receipts_linearized( room_id, stream_id );
+CREATE INDEX receipts_linearized_user ON receipts_linearized( user_id );
+
+-- Re-run background updates from 72/08thread_receipts.sql.
+INSERT INTO background_updates (ordering, update_name, progress_json) VALUES
+  (7308, 'receipts_linearized_unique_index', '{}')
+  ON CONFLICT (update_name) DO NOTHING;
+INSERT INTO background_updates (ordering, update_name, progress_json) VALUES
+  (7308, 'receipts_graph_unique_index', '{}')
+  ON CONFLICT (update_name) DO NOTHING;
diff --git a/synapse/storage/schema/main/delta/73/09threads_table.sql b/synapse/storage/schema/main/delta/73/09threads_table.sql
new file mode 100644
index 0000000000..aa7c5e9a2e
--- /dev/null
+++ b/synapse/storage/schema/main/delta/73/09threads_table.sql
@@ -0,0 +1,30 @@
+/* Copyright 2022 The Matrix.org Foundation C.I.C
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *    http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+CREATE TABLE threads (
+    room_id TEXT NOT NULL,
+    -- The event ID of the root event in the thread.
+    thread_id TEXT NOT NULL,
+    -- The latest event ID and corresponding topo / stream ordering.
+    latest_event_id TEXT NOT NULL,
+    topological_ordering BIGINT NOT NULL,
+    stream_ordering BIGINT NOT NULL,
+    CONSTRAINT threads_uniqueness UNIQUE (room_id, thread_id)
+);
+
+CREATE INDEX threads_ordering_idx ON threads(room_id, topological_ordering, stream_ordering);
+
+INSERT INTO background_updates (ordering, update_name, progress_json) VALUES
+  (7309, 'threads_backfill', '{}');
diff --git a/synapse/streams/__init__.py b/synapse/streams/__init__.py
index 806b671305..2dcd43d0a2 100644
--- a/synapse/streams/__init__.py
+++ b/synapse/streams/__init__.py
@@ -27,7 +27,7 @@ class EventSource(Generic[K, R]):
         self,
         user: UserID,
         from_key: K,
-        limit: Optional[int],
+        limit: int,
         room_ids: Collection[str],
         is_guest: bool,
         explicit_room_id: Optional[str] = None,
diff --git a/synapse/streams/config.py b/synapse/streams/config.py
index b52723e2b8..6df2de919c 100644
--- a/synapse/streams/config.py
+++ b/synapse/streams/config.py
@@ -35,17 +35,19 @@ class PaginationConfig:
     from_token: Optional[StreamToken]
     to_token: Optional[StreamToken]
     direction: str
-    limit: Optional[int]
+    limit: int
 
     @classmethod
     async def from_request(
         cls,
         store: "DataStore",
         request: SynapseRequest,
-        raise_invalid_params: bool = True,
-        default_limit: Optional[int] = None,
+        default_limit: int,
+        default_dir: str = "f",
     ) -> "PaginationConfig":
-        direction = parse_string(request, "dir", default="f", allowed_values=["f", "b"])
+        direction = parse_string(
+            request, "dir", default=default_dir, allowed_values=["f", "b"]
+        )
 
         from_tok_str = parse_string(request, "from")
         to_tok_str = parse_string(request, "to")
@@ -67,12 +69,10 @@ class PaginationConfig:
             raise SynapseError(400, "'to' parameter is invalid")
 
         limit = parse_integer(request, "limit", default=default_limit)
+        if limit < 0:
+            raise SynapseError(400, "Limit must be 0 or above")
 
-        if limit:
-            if limit < 0:
-                raise SynapseError(400, "Limit must be 0 or above")
-
-            limit = min(int(limit), MAX_LIMIT)
+        limit = min(limit, MAX_LIMIT)
 
         try:
             return PaginationConfig(from_tok, to_tok, direction, limit)
diff --git a/synapse/util/__init__.py b/synapse/util/__init__.py
index a90f08dd4c..7be9d5f113 100644
--- a/synapse/util/__init__.py
+++ b/synapse/util/__init__.py
@@ -15,7 +15,7 @@
 import json
 import logging
 import typing
-from typing import Any, Callable, Dict, Generator, Optional
+from typing import Any, Callable, Dict, Generator, Optional, Sequence
 
 import attr
 from frozendict import frozendict
@@ -193,3 +193,15 @@ def log_failure(
 # Version string with git info. Computed here once so that we don't invoke git multiple
 # times.
 SYNAPSE_VERSION = get_distribution_version_string("matrix-synapse", __file__)
+
+
+class ExceptionBundle(Exception):
+    # A poor stand-in for something like Python 3.11's ExceptionGroup.
+    # (A backport called `exceptiongroup` exists but seems overkill: we just want a
+    # container type here.)
+    def __init__(self, message: str, exceptions: Sequence[Exception]):
+        parts = [message]
+        for e in exceptions:
+            parts.append(str(e))
+        super().__init__("\n  - ".join(parts))
+        self.exceptions = exceptions
diff --git a/synapse/util/stringutils.py b/synapse/util/stringutils.py
index 27a363d7e5..4961fe9313 100644
--- a/synapse/util/stringutils.py
+++ b/synapse/util/stringutils.py
@@ -86,7 +86,7 @@ def parse_server_name(server_name: str) -> Tuple[str, Optional[int]]:
         ValueError if the server name could not be parsed.
     """
     try:
-        if server_name[-1] == "]":
+        if server_name and server_name[-1] == "]":
             # ipv6 literal, hopefully
             return server_name, None
 
@@ -123,7 +123,7 @@ def parse_and_validate_server_name(server_name: str) -> Tuple[str, Optional[int]
     # that nobody is sneaking IP literals in that look like hostnames, etc.
 
     # look for ipv6 literals
-    if host[0] == "[":
+    if host and host[0] == "[":
         if host[-1] != "]":
             raise ValueError("Mismatched [...] in server name '%s'" % (server_name,))
 
diff --git a/synapse/visibility.py b/synapse/visibility.py
index c4048d2477..40a9c5b53f 100644
--- a/synapse/visibility.py
+++ b/synapse/visibility.py
@@ -84,7 +84,15 @@ async def filter_events_for_client(
     """
     # Filter out events that have been soft failed so that we don't relay them
     # to clients.
+    events_before_filtering = events
     events = [e for e in events if not e.internal_metadata.is_soft_failed()]
+    if len(events_before_filtering) != len(events):
+        if logger.isEnabledFor(logging.DEBUG):
+            logger.debug(
+                "filter_events_for_client: Filtered out soft-failed events: Before=%s, After=%s",
+                [event.event_id for event in events_before_filtering],
+                [event.event_id for event in events],
+            )
 
     types = (_HISTORY_VIS_KEY, (EventTypes.Member, user_id))
 
@@ -301,6 +309,10 @@ def _check_client_allowed_to_see_event(
             _check_filter_send_to_client(event, clock, retention_policy, sender_ignored)
             == _CheckFilter.DENIED
         ):
+            logger.debug(
+                "_check_client_allowed_to_see_event(event=%s): Filtered out event because `_check_filter_send_to_client` returned `_CheckFilter.DENIED`",
+                event.event_id,
+            )
             return None
 
     if event.event_id in always_include_ids:
@@ -312,9 +324,17 @@ def _check_client_allowed_to_see_event(
         # for out-of-band membership events (eg, incoming invites, or rejections of
         # said invite) for the user themselves.
         if event.type == EventTypes.Member and event.state_key == user_id:
-            logger.debug("Returning out-of-band-membership event %s", event)
+            logger.debug(
+                "_check_client_allowed_to_see_event(event=%s): Returning out-of-band-membership event %s",
+                event.event_id,
+                event,
+            )
             return event
 
+        logger.debug(
+            "_check_client_allowed_to_see_event(event=%s): Filtered out event because it's an outlier",
+            event.event_id,
+        )
         return None
 
     if state is None:
@@ -337,11 +357,21 @@ def _check_client_allowed_to_see_event(
 
     membership_result = _check_membership(user_id, event, visibility, state, is_peeking)
     if not membership_result.allowed:
+        logger.debug(
+            "_check_client_allowed_to_see_event(event=%s): Filtered out event because the user can't see the event because of their membership, membership_result.allowed=%s membership_result.joined=%s",
+            event.event_id,
+            membership_result.allowed,
+            membership_result.joined,
+        )
         return None
 
     # If the sender has been erased and the user was not joined at the time, we
     # must only return the redacted form.
     if sender_erased and not membership_result.joined:
+        logger.debug(
+            "_check_client_allowed_to_see_event(event=%s): Returning pruned event because `sender_erased` and the user was not joined at the time",
+            event.event_id,
+        )
         event = prune_event(event)
 
     return event
diff --git a/tests/api/test_filtering.py b/tests/api/test_filtering.py
index a269c477fb..a82c4eed86 100644
--- a/tests/api/test_filtering.py
+++ b/tests/api/test_filtering.py
@@ -35,6 +35,8 @@ def MockEvent(**kwargs):
         kwargs["event_id"] = "fake_event_id"
     if "type" not in kwargs:
         kwargs["type"] = "fake_type"
+    if "content" not in kwargs:
+        kwargs["content"] = {}
     return make_event_from_dict(kwargs)
 
 
@@ -357,6 +359,66 @@ class FilteringTestCase(unittest.HomeserverTestCase):
 
         self.assertTrue(Filter(self.hs, definition)._check(event))
 
+    @unittest.override_config({"experimental_features": {"msc3874_enabled": True}})
+    def test_filter_rel_type(self):
+        definition = {"org.matrix.msc3874.rel_types": ["m.thread"]}
+        event = MockEvent(
+            sender="@foo:bar",
+            type="m.room.message",
+            room_id="!secretbase:unknown",
+            content={},
+        )
+
+        self.assertFalse(Filter(self.hs, definition)._check(event))
+
+        event = MockEvent(
+            sender="@foo:bar",
+            type="m.room.message",
+            room_id="!secretbase:unknown",
+            content={"m.relates_to": {"event_id": "$abc", "rel_type": "m.reference"}},
+        )
+
+        self.assertFalse(Filter(self.hs, definition)._check(event))
+
+        event = MockEvent(
+            sender="@foo:bar",
+            type="m.room.message",
+            room_id="!secretbase:unknown",
+            content={"m.relates_to": {"event_id": "$abc", "rel_type": "m.thread"}},
+        )
+
+        self.assertTrue(Filter(self.hs, definition)._check(event))
+
+    @unittest.override_config({"experimental_features": {"msc3874_enabled": True}})
+    def test_filter_not_rel_type(self):
+        definition = {"org.matrix.msc3874.not_rel_types": ["m.thread"]}
+        event = MockEvent(
+            sender="@foo:bar",
+            type="m.room.message",
+            room_id="!secretbase:unknown",
+            content={"m.relates_to": {"event_id": "$abc", "rel_type": "m.thread"}},
+        )
+
+        self.assertFalse(Filter(self.hs, definition)._check(event))
+
+        event = MockEvent(
+            sender="@foo:bar",
+            type="m.room.message",
+            room_id="!secretbase:unknown",
+            content={},
+        )
+
+        self.assertTrue(Filter(self.hs, definition)._check(event))
+
+        event = MockEvent(
+            sender="@foo:bar",
+            type="m.room.message",
+            room_id="!secretbase:unknown",
+            content={"m.relates_to": {"event_id": "$abc", "rel_type": "m.reference"}},
+        )
+
+        self.assertTrue(Filter(self.hs, definition)._check(event))
+
     def test_filter_presence_match(self):
         user_filter_json = {"presence": {"types": ["m.*"]}}
         filter_id = self.get_success(
@@ -456,7 +518,6 @@ class FilteringTestCase(unittest.HomeserverTestCase):
 
         self.assertEqual(filtered_room_ids, ["!allowed:example.com"])
 
-    @unittest.override_config({"experimental_features": {"msc3440_enabled": True}})
     def test_filter_relations(self):
         events = [
             # An event without a relation.
diff --git a/tests/appservice/test_api.py b/tests/appservice/test_api.py
index 532b676365..11008ac1fb 100644
--- a/tests/appservice/test_api.py
+++ b/tests/appservice/test_api.py
@@ -69,10 +69,14 @@ class ApplicationServiceApiTestCase(unittest.HomeserverTestCase):
 
         self.request_url = None
 
-        async def get_json(url: str, args: Mapping[Any, Any]) -> List[JsonDict]:
-            if not args.get(b"access_token"):
+        async def get_json(
+            url: str, args: Mapping[Any, Any], headers: Mapping[Any, Any]
+        ) -> List[JsonDict]:
+            # Ensure the access token is passed as both a header and query arg.
+            if not headers.get("Authorization") or not args.get(b"access_token"):
                 raise RuntimeError("Access token not provided")
 
+            self.assertEqual(headers.get("Authorization"), f"Bearer {TOKEN}")
             self.assertEqual(args.get(b"access_token"), TOKEN)
             self.request_url = url
             if url == URL_USER:
diff --git a/tests/federation/transport/test_client.py b/tests/federation/transport/test_client.py
index c2320ce133..0926e0583d 100644
--- a/tests/federation/transport/test_client.py
+++ b/tests/federation/transport/test_client.py
@@ -13,6 +13,7 @@
 # limitations under the License.
 
 import json
+from unittest.mock import Mock
 
 from synapse.api.room_versions import RoomVersions
 from synapse.federation.transport.client import SendJoinParser
@@ -94,3 +95,39 @@ class SendJoinParserTestCase(TestCase):
         # Retrieve and check the parsed SendJoinResponse
         parsed_response = parser.finish()
         self.assertEqual(parsed_response.servers_in_room, ["hs1", "hs2"])
+
+    def test_errors_closing_coroutines(self) -> None:
+        """Check we close all coroutines, even if closing the first raises an Exception.
+
+        We also check that an Exception of some kind is raised, but we don't make any
+        assertions about its attributes or type.
+        """
+        parser = SendJoinParser(RoomVersions.V1, False)
+        response = {"org.matrix.msc3706.servers_in_room": ["hs1", "hs2"]}
+        serialisation = json.dumps(response).encode()
+
+        # Mock the coroutines managed by this parser.
+        # The first one will error when we try to close it.
+        coro_1 = Mock()
+        coro_1.close = Mock(side_effect=RuntimeError("Couldn't close coro 1"))
+
+        coro_2 = Mock()
+
+        coro_3 = Mock()
+        coro_3.close = Mock(side_effect=RuntimeError("Couldn't close coro 3"))
+
+        parser._coros = [coro_1, coro_2, coro_3]
+
+        # Send half of the data to the parser
+        parser.write(serialisation[: len(serialisation) // 2])
+
+        # Close the parser. There should be _some_ kind of exception, but it need not
+        # be that RuntimeError directly. E.g. we might want to raise a wrapper
+        # encompassing multiple errors from multiple coroutines.
+        with self.assertRaises(Exception):
+            parser.finish()
+
+        # In any case, we should have tried to close both coros.
+        coro_1.close.assert_called()
+        coro_2.close.assert_called()
+        coro_3.close.assert_called()
diff --git a/tests/handlers/test_appservice.py b/tests/handlers/test_appservice.py
index af24c4984d..7e4570f990 100644
--- a/tests/handlers/test_appservice.py
+++ b/tests/handlers/test_appservice.py
@@ -76,9 +76,13 @@ class AppServiceHandlerTestCase(unittest.TestCase):
         event = Mock(
             sender="@someone:anywhere", type="m.room.message", room_id="!foo:bar"
         )
-        self.mock_store.get_all_new_events_stream.side_effect = [
-            make_awaitable((0, [], {})),
-            make_awaitable((1, [event], {event.event_id: 0})),
+        self.mock_store.get_all_new_event_ids_stream.side_effect = [
+            make_awaitable((0, {})),
+            make_awaitable((1, {event.event_id: 0})),
+        ]
+        self.mock_store.get_events_as_list.side_effect = [
+            make_awaitable([]),
+            make_awaitable([event]),
         ]
         self.handler.notify_interested_services(RoomStreamToken(None, 1))
 
@@ -95,10 +99,10 @@ class AppServiceHandlerTestCase(unittest.TestCase):
 
         event = Mock(sender=user_id, type="m.room.message", room_id="!foo:bar")
         self.mock_as_api.query_user.return_value = make_awaitable(True)
-        self.mock_store.get_all_new_events_stream.side_effect = [
-            make_awaitable((0, [event], {event.event_id: 0})),
+        self.mock_store.get_all_new_event_ids_stream.side_effect = [
+            make_awaitable((0, {event.event_id: 0})),
         ]
-
+        self.mock_store.get_events_as_list.side_effect = [make_awaitable([event])]
         self.handler.notify_interested_services(RoomStreamToken(None, 0))
 
         self.mock_as_api.query_user.assert_called_once_with(services[0], user_id)
@@ -112,7 +116,7 @@ class AppServiceHandlerTestCase(unittest.TestCase):
 
         event = Mock(sender=user_id, type="m.room.message", room_id="!foo:bar")
         self.mock_as_api.query_user.return_value = make_awaitable(True)
-        self.mock_store.get_all_new_events_stream.side_effect = [
+        self.mock_store.get_all_new_event_ids_stream.side_effect = [
             make_awaitable((0, [event], {event.event_id: 0})),
         ]
 
diff --git a/tests/handlers/test_federation.py b/tests/handlers/test_federation.py
index 745750b1d7..d00c69c229 100644
--- a/tests/handlers/test_federation.py
+++ b/tests/handlers/test_federation.py
@@ -19,7 +19,13 @@ from unittest.mock import Mock, patch
 from twisted.test.proto_helpers import MemoryReactor
 
 from synapse.api.constants import EventTypes
-from synapse.api.errors import AuthError, Codes, LimitExceededError, SynapseError
+from synapse.api.errors import (
+    AuthError,
+    Codes,
+    LimitExceededError,
+    NotFoundError,
+    SynapseError,
+)
 from synapse.api.room_versions import RoomVersions
 from synapse.events import EventBase, make_event_from_dict
 from synapse.federation.federation_base import event_from_pdu_json
@@ -28,6 +34,7 @@ from synapse.logging.context import LoggingContext, run_in_background
 from synapse.rest import admin
 from synapse.rest.client import login, room
 from synapse.server import HomeServer
+from synapse.storage.databases.main.events_worker import EventCacheEntry
 from synapse.util import Clock
 from synapse.util.stringutils import random_string
 
@@ -322,6 +329,102 @@ class FederationTestCase(unittest.FederatingHomeserverTestCase):
             )
         self.get_success(d)
 
+    def test_backfill_ignores_known_events(self) -> None:
+        """
+        Tests that events that we already know about are ignored when backfilling.
+        """
+        # Set up users
+        user_id = self.register_user("kermit", "test")
+        tok = self.login("kermit", "test")
+
+        other_server = "otherserver"
+        other_user = "@otheruser:" + other_server
+
+        # Create a room to backfill events into
+        room_id = self.helper.create_room_as(room_creator=user_id, tok=tok)
+        room_version = self.get_success(self.store.get_room_version(room_id))
+
+        # Build an event to backfill
+        event = event_from_pdu_json(
+            {
+                "type": EventTypes.Message,
+                "content": {"body": "hello world", "msgtype": "m.text"},
+                "room_id": room_id,
+                "sender": other_user,
+                "depth": 32,
+                "prev_events": [],
+                "auth_events": [],
+                "origin_server_ts": self.clock.time_msec(),
+            },
+            room_version,
+        )
+
+        # Ensure the event is not already in the DB
+        self.get_failure(
+            self.store.get_event(event.event_id),
+            NotFoundError,
+        )
+
+        # Backfill the event and check that it has entered the DB.
+
+        # We mock out the FederationClient.backfill method, to pretend that a remote
+        # server has returned our fake event.
+        federation_client_backfill_mock = Mock(return_value=make_awaitable([event]))
+        self.hs.get_federation_client().backfill = federation_client_backfill_mock
+
+        # We also mock the persist method with a side effect of itself. This allows us
+        # to track when it has been called while preserving its function.
+        persist_events_and_notify_mock = Mock(
+            side_effect=self.hs.get_federation_event_handler().persist_events_and_notify
+        )
+        self.hs.get_federation_event_handler().persist_events_and_notify = (
+            persist_events_and_notify_mock
+        )
+
+        # Small side-tangent. We populate the event cache with the event, even though
+        # it is not yet in the DB. This is an invalid scenario that can currently occur
+        # due to not properly invalidating the event cache.
+        # See https://github.com/matrix-org/synapse/issues/13476.
+        #
+        # As a result, backfill should not rely on the event cache to check whether
+        # we already have an event in the DB.
+        # TODO: Remove this bit when the event cache is properly invalidated.
+        cache_entry = EventCacheEntry(
+            event=event,
+            redacted_event=None,
+        )
+        self.store._get_event_cache.set_local((event.event_id,), cache_entry)
+
+        # We now call FederationEventHandler.backfill (a separate method) to trigger
+        # a backfill request. It should receive the fake event.
+        self.get_success(
+            self.hs.get_federation_event_handler().backfill(
+                other_user,
+                room_id,
+                limit=10,
+                extremities=[],
+            )
+        )
+
+        # Check that our fake event was persisted.
+        persist_events_and_notify_mock.assert_called_once()
+        persist_events_and_notify_mock.reset_mock()
+
+        # Now we repeat the backfill, having the homeserver receive the fake event
+        # again.
+        self.get_success(
+            self.hs.get_federation_event_handler().backfill(
+                other_user,
+                room_id,
+                limit=10,
+                extremities=[],
+            ),
+        )
+
+        # This time, we expect no event persistence to have occurred, as we already
+        # have this event.
+        persist_events_and_notify_mock.assert_not_called()
+
     @unittest.override_config(
         {"rc_invites": {"per_user": {"per_second": 0.5, "burst_count": 3}}}
     )
diff --git a/tests/handlers/test_federation_event.py b/tests/handlers/test_federation_event.py
index 918010cddb..e448cb1901 100644
--- a/tests/handlers/test_federation_event.py
+++ b/tests/handlers/test_federation_event.py
@@ -14,7 +14,7 @@
 from typing import Optional
 from unittest import mock
 
-from synapse.api.errors import AuthError
+from synapse.api.errors import AuthError, StoreError
 from synapse.api.room_versions import RoomVersion
 from synapse.event_auth import (
     check_state_dependent_auth_rules,
@@ -43,7 +43,7 @@ class FederationEventHandlerTests(unittest.FederatingHomeserverTestCase):
     def make_homeserver(self, reactor, clock):
         # mock out the federation transport client
         self.mock_federation_transport_client = mock.Mock(
-            spec=["get_room_state_ids", "get_room_state", "get_event"]
+            spec=["get_room_state_ids", "get_room_state", "get_event", "backfill"]
         )
         return super().setup_test_homeserver(
             federation_transport_client=self.mock_federation_transport_client
@@ -459,6 +459,203 @@ class FederationEventHandlerTests(unittest.FederatingHomeserverTestCase):
         )
         self.assertIsNotNone(persisted, "pulled event was not persisted at all")
 
+    def test_backfill_signature_failure_does_not_fetch_same_prev_event_later(
+        self,
+    ) -> None:
+        """
+        Test to make sure we backoff and don't try to fetch a missing prev_event when we
+        already know it has a invalid signature from checking the signatures of all of
+        the events in the backfill response.
+        """
+        OTHER_USER = f"@user:{self.OTHER_SERVER_NAME}"
+        main_store = self.hs.get_datastores().main
+
+        # Create the room
+        user_id = self.register_user("kermit", "test")
+        tok = self.login("kermit", "test")
+        room_id = self.helper.create_room_as(room_creator=user_id, tok=tok)
+        room_version = self.get_success(main_store.get_room_version(room_id))
+
+        # Allow the remote user to send state events
+        self.helper.send_state(
+            room_id,
+            "m.room.power_levels",
+            {"events_default": 0, "state_default": 0},
+            tok=tok,
+        )
+
+        # Add the remote user to the room
+        member_event = self.get_success(
+            event_injection.inject_member_event(self.hs, room_id, OTHER_USER, "join")
+        )
+
+        initial_state_map = self.get_success(
+            main_store.get_partial_current_state_ids(room_id)
+        )
+
+        auth_event_ids = [
+            initial_state_map[("m.room.create", "")],
+            initial_state_map[("m.room.power_levels", "")],
+            member_event.event_id,
+        ]
+
+        # We purposely don't run `add_hashes_and_signatures_from_other_server`
+        # over this because we want the signature check to fail.
+        pulled_event_without_signatures = make_event_from_dict(
+            {
+                "type": "test_regular_type",
+                "room_id": room_id,
+                "sender": OTHER_USER,
+                "prev_events": [member_event.event_id],
+                "auth_events": auth_event_ids,
+                "origin_server_ts": 1,
+                "depth": 12,
+                "content": {"body": "pulled_event_without_signatures"},
+            },
+            room_version,
+        )
+
+        # Create a regular event that should pass except for the
+        # `pulled_event_without_signatures` in the `prev_event`.
+        pulled_event = make_event_from_dict(
+            self.add_hashes_and_signatures_from_other_server(
+                {
+                    "type": "test_regular_type",
+                    "room_id": room_id,
+                    "sender": OTHER_USER,
+                    "prev_events": [
+                        member_event.event_id,
+                        pulled_event_without_signatures.event_id,
+                    ],
+                    "auth_events": auth_event_ids,
+                    "origin_server_ts": 1,
+                    "depth": 12,
+                    "content": {"body": "pulled_event"},
+                }
+            ),
+            room_version,
+        )
+
+        # We expect an outbound request to /backfill, so stub that out
+        self.mock_federation_transport_client.backfill.return_value = make_awaitable(
+            {
+                "origin": self.OTHER_SERVER_NAME,
+                "origin_server_ts": 123,
+                "pdus": [
+                    # This is one of the important aspects of this test: we include
+                    # `pulled_event_without_signatures` so it fails the signature check
+                    # when we filter down the backfill response down to events which
+                    # have valid signatures in
+                    # `_check_sigs_and_hash_for_pulled_events_and_fetch`
+                    pulled_event_without_signatures.get_pdu_json(),
+                    # Then later when we process this valid signature event, when we
+                    # fetch the missing `prev_event`s, we want to make sure that we
+                    # backoff and don't try and fetch `pulled_event_without_signatures`
+                    # again since we know it just had an invalid signature.
+                    pulled_event.get_pdu_json(),
+                ],
+            }
+        )
+
+        # Keep track of the count and make sure we don't make any of these requests
+        event_endpoint_requested_count = 0
+        room_state_ids_endpoint_requested_count = 0
+        room_state_endpoint_requested_count = 0
+
+        async def get_event(
+            destination: str, event_id: str, timeout: Optional[int] = None
+        ) -> None:
+            nonlocal event_endpoint_requested_count
+            event_endpoint_requested_count += 1
+
+        async def get_room_state_ids(
+            destination: str, room_id: str, event_id: str
+        ) -> None:
+            nonlocal room_state_ids_endpoint_requested_count
+            room_state_ids_endpoint_requested_count += 1
+
+        async def get_room_state(
+            room_version: RoomVersion, destination: str, room_id: str, event_id: str
+        ) -> None:
+            nonlocal room_state_endpoint_requested_count
+            room_state_endpoint_requested_count += 1
+
+        # We don't expect an outbound request to `/event`, `/state_ids`, or `/state` in
+        # the happy path but if the logic is sneaking around what we expect, stub that
+        # out so we can detect that failure
+        self.mock_federation_transport_client.get_event.side_effect = get_event
+        self.mock_federation_transport_client.get_room_state_ids.side_effect = (
+            get_room_state_ids
+        )
+        self.mock_federation_transport_client.get_room_state.side_effect = (
+            get_room_state
+        )
+
+        # The function under test: try to backfill and process the pulled event
+        with LoggingContext("test"):
+            self.get_success(
+                self.hs.get_federation_event_handler().backfill(
+                    self.OTHER_SERVER_NAME,
+                    room_id,
+                    limit=1,
+                    extremities=["$some_extremity"],
+                )
+            )
+
+        if event_endpoint_requested_count > 0:
+            self.fail(
+                "We don't expect an outbound request to /event in the happy path but if "
+                "the logic is sneaking around what we expect, make sure to fail the test. "
+                "We don't expect it because the signature failure should cause us to backoff "
+                "and not asking about pulled_event_without_signatures="
+                f"{pulled_event_without_signatures.event_id} again"
+            )
+
+        if room_state_ids_endpoint_requested_count > 0:
+            self.fail(
+                "We don't expect an outbound request to /state_ids in the happy path but if "
+                "the logic is sneaking around what we expect, make sure to fail the test. "
+                "We don't expect it because the signature failure should cause us to backoff "
+                "and not asking about pulled_event_without_signatures="
+                f"{pulled_event_without_signatures.event_id} again"
+            )
+
+        if room_state_endpoint_requested_count > 0:
+            self.fail(
+                "We don't expect an outbound request to /state in the happy path but if "
+                "the logic is sneaking around what we expect, make sure to fail the test. "
+                "We don't expect it because the signature failure should cause us to backoff "
+                "and not asking about pulled_event_without_signatures="
+                f"{pulled_event_without_signatures.event_id} again"
+            )
+
+        # Make sure we only recorded a single failure which corresponds to the signature
+        # failure initially in `_check_sigs_and_hash_for_pulled_events_and_fetch` before
+        # we process all of the pulled events.
+        backfill_num_attempts_for_event_without_signatures = self.get_success(
+            main_store.db_pool.simple_select_one_onecol(
+                table="event_failed_pull_attempts",
+                keyvalues={"event_id": pulled_event_without_signatures.event_id},
+                retcol="num_attempts",
+            )
+        )
+        self.assertEqual(backfill_num_attempts_for_event_without_signatures, 1)
+
+        # And make sure we didn't record a failure for the event that has the missing
+        # prev_event because we don't want to cause a cascade of failures. Not being
+        # able to fetch the `prev_events` just means we won't be able to de-outlier the
+        # pulled event. But we can still use an `outlier` in the state/auth chain for
+        # another event. So we shouldn't stop a downstream event from trying to pull it.
+        self.get_failure(
+            main_store.db_pool.simple_select_one_onecol(
+                table="event_failed_pull_attempts",
+                keyvalues={"event_id": pulled_event.event_id},
+                retcol="num_attempts",
+            ),
+            # StoreError: 404: No row found
+            StoreError,
+        )
+
     def test_process_pulled_event_with_rejected_missing_state(self) -> None:
         """Ensure that we correctly handle pulled events with missing state containing a
         rejected state event
diff --git a/tests/http/test_endpoint.py b/tests/http/test_endpoint.py
index c8cc21cadd..a801f002a0 100644
--- a/tests/http/test_endpoint.py
+++ b/tests/http/test_endpoint.py
@@ -25,6 +25,8 @@ class ServerNameTestCase(unittest.TestCase):
             "[0abc:1def::1234]": ("[0abc:1def::1234]", None),
             "1.2.3.4:1": ("1.2.3.4", 1),
             "[0abc:1def::1234]:8080": ("[0abc:1def::1234]", 8080),
+            ":80": ("", 80),
+            "": ("", None),
         }
 
         for i, o in test_data.items():
@@ -42,6 +44,7 @@ class ServerNameTestCase(unittest.TestCase):
             "newline.com\n",
             ".empty-label.com",
             "1234:5678:80",  # too many colons
+            ":80",
         ]
         for i in test_data:
             try:
diff --git a/tests/http/test_servlet.py b/tests/http/test_servlet.py
index 3cbca0f5a3..46166292fe 100644
--- a/tests/http/test_servlet.py
+++ b/tests/http/test_servlet.py
@@ -35,11 +35,13 @@ from tests.http.server._base import test_disconnect
 
 def make_request(content):
     """Make an object that acts enough like a request."""
-    request = Mock(spec=["content"])
+    request = Mock(spec=["method", "uri", "content"])
 
     if isinstance(content, dict):
         content = json.dumps(content).encode("utf8")
 
+    request.method = bytes("STUB_METHOD", "ascii")
+    request.uri = bytes("/test_stub_uri", "ascii")
     request.content = BytesIO(content)
     return request
 
diff --git a/tests/push/test_push_rule_evaluator.py b/tests/push/test_push_rule_evaluator.py
index 8804f0e0d3..decf619466 100644
--- a/tests/push/test_push_rule_evaluator.py
+++ b/tests/push/test_push_rule_evaluator.py
@@ -12,7 +12,7 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
-from typing import Dict, Optional, Set, Tuple, Union
+from typing import Dict, Optional, Union
 
 import frozendict
 
@@ -38,12 +38,7 @@ from tests.test_utils.event_injection import create_event, inject_member_event
 
 
 class PushRuleEvaluatorTestCase(unittest.TestCase):
-    def _get_evaluator(
-        self,
-        content: JsonDict,
-        relations: Optional[Dict[str, Set[Tuple[str, str]]]] = None,
-        relations_match_enabled: bool = False,
-    ) -> PushRuleEvaluator:
+    def _get_evaluator(self, content: JsonDict) -> PushRuleEvaluator:
         event = FrozenEvent(
             {
                 "event_id": "$event_id",
@@ -63,8 +58,6 @@ class PushRuleEvaluatorTestCase(unittest.TestCase):
             room_member_count,
             sender_power_level,
             power_levels.get("notifications", {}),
-            relations or {},
-            relations_match_enabled,
         )
 
     def test_display_name(self) -> None:
@@ -299,71 +292,6 @@ class PushRuleEvaluatorTestCase(unittest.TestCase):
             {"sound": "default", "highlight": True},
         )
 
-    def test_relation_match(self) -> None:
-        """Test the relation_match push rule kind."""
-
-        # Check if the experimental feature is disabled.
-        evaluator = self._get_evaluator(
-            {}, {"m.annotation": {("@user:test", "m.reaction")}}
-        )
-
-        # A push rule evaluator with the experimental rule enabled.
-        evaluator = self._get_evaluator(
-            {}, {"m.annotation": {("@user:test", "m.reaction")}}, True
-        )
-
-        # Check just relation type.
-        condition = {
-            "kind": "org.matrix.msc3772.relation_match",
-            "rel_type": "m.annotation",
-        }
-        self.assertTrue(evaluator.matches(condition, "@user:test", "foo"))
-
-        # Check relation type and sender.
-        condition = {
-            "kind": "org.matrix.msc3772.relation_match",
-            "rel_type": "m.annotation",
-            "sender": "@user:test",
-        }
-        self.assertTrue(evaluator.matches(condition, "@user:test", "foo"))
-        condition = {
-            "kind": "org.matrix.msc3772.relation_match",
-            "rel_type": "m.annotation",
-            "sender": "@other:test",
-        }
-        self.assertFalse(evaluator.matches(condition, "@user:test", "foo"))
-
-        # Check relation type and event type.
-        condition = {
-            "kind": "org.matrix.msc3772.relation_match",
-            "rel_type": "m.annotation",
-            "type": "m.reaction",
-        }
-        self.assertTrue(evaluator.matches(condition, "@user:test", "foo"))
-
-        # Check just sender, this fails since rel_type is required.
-        condition = {
-            "kind": "org.matrix.msc3772.relation_match",
-            "sender": "@user:test",
-        }
-        self.assertFalse(evaluator.matches(condition, "@user:test", "foo"))
-
-        # Check sender glob.
-        condition = {
-            "kind": "org.matrix.msc3772.relation_match",
-            "rel_type": "m.annotation",
-            "sender": "@*:test",
-        }
-        self.assertTrue(evaluator.matches(condition, "@user:test", "foo"))
-
-        # Check event type glob.
-        condition = {
-            "kind": "org.matrix.msc3772.relation_match",
-            "rel_type": "m.annotation",
-            "event_type": "*.reaction",
-        }
-        self.assertTrue(evaluator.matches(condition, "@user:test", "foo"))
-
 
 class TestBulkPushRuleEvaluator(unittest.HomeserverTestCase):
     """Tests for the bulk push rule evaluator"""
diff --git a/tests/replication/slave/storage/test_events.py b/tests/replication/slave/storage/test_events.py
index efd92793c0..d42e36cdf1 100644
--- a/tests/replication/slave/storage/test_events.py
+++ b/tests/replication/slave/storage/test_events.py
@@ -22,7 +22,10 @@ from synapse.api.room_versions import RoomVersions
 from synapse.events import FrozenEvent, _EventInternalMetadata, make_event_from_dict
 from synapse.handlers.room import RoomEventSource
 from synapse.replication.slave.storage.events import SlavedEventStore
-from synapse.storage.databases.main.event_push_actions import NotifCounts
+from synapse.storage.databases.main.event_push_actions import (
+    NotifCounts,
+    RoomNotifCounts,
+)
 from synapse.storage.roommember import GetRoomsForUserWithStreamOrdering, RoomsForUser
 from synapse.types import PersistedEventPosition
 
@@ -178,7 +181,9 @@ class SlavedEventStoreTestCase(BaseSlavedStoreTestCase):
         self.check(
             "get_unread_event_push_actions_by_room_for_user",
             [ROOM_ID, USER_ID_2],
-            NotifCounts(highlight_count=0, unread_count=0, notify_count=0),
+            RoomNotifCounts(
+                NotifCounts(highlight_count=0, unread_count=0, notify_count=0), {}
+            ),
         )
 
         self.persist(
@@ -191,7 +196,9 @@ class SlavedEventStoreTestCase(BaseSlavedStoreTestCase):
         self.check(
             "get_unread_event_push_actions_by_room_for_user",
             [ROOM_ID, USER_ID_2],
-            NotifCounts(highlight_count=0, unread_count=0, notify_count=1),
+            RoomNotifCounts(
+                NotifCounts(highlight_count=0, unread_count=0, notify_count=1), {}
+            ),
         )
 
         self.persist(
@@ -206,7 +213,9 @@ class SlavedEventStoreTestCase(BaseSlavedStoreTestCase):
         self.check(
             "get_unread_event_push_actions_by_room_for_user",
             [ROOM_ID, USER_ID_2],
-            NotifCounts(highlight_count=1, unread_count=0, notify_count=2),
+            RoomNotifCounts(
+                NotifCounts(highlight_count=1, unread_count=0, notify_count=2), {}
+            ),
         )
 
     def test_get_rooms_for_user_with_stream_ordering(self):
diff --git a/tests/rest/client/test_relations.py b/tests/rest/client/test_relations.py
index 988cdb746d..ddf315b894 100644
--- a/tests/rest/client/test_relations.py
+++ b/tests/rest/client/test_relations.py
@@ -1677,7 +1677,6 @@ class RelationRedactionTestCase(BaseRelationsTestCase):
             {"chunk": [{"type": "m.reaction", "key": "👍", "count": 1}]},
         )
 
-    @unittest.override_config({"experimental_features": {"msc3440_enabled": True}})
     def test_redact_parent_thread(self) -> None:
         """
         Test that thread replies are still available when the root event is redacted.
@@ -1707,3 +1706,165 @@ class RelationRedactionTestCase(BaseRelationsTestCase):
             relations[RelationTypes.THREAD]["latest_event"]["event_id"],
             related_event_id,
         )
+
+
+class ThreadsTestCase(BaseRelationsTestCase):
+    def _get_threads(self, body: JsonDict) -> List[Tuple[str, str]]:
+        return [
+            (
+                ev["event_id"],
+                ev["unsigned"]["m.relations"]["m.thread"]["latest_event"]["event_id"],
+            )
+            for ev in body["chunk"]
+        ]
+
+    def test_threads(self) -> None:
+        """Create threads and ensure the ordering is due to their latest event."""
+        # Create 2 threads.
+        thread_1 = self.parent_id
+        res = self.helper.send(self.room, body="Thread Root!", tok=self.user_token)
+        thread_2 = res["event_id"]
+
+        channel = self._send_relation(RelationTypes.THREAD, "m.room.test")
+        reply_1 = channel.json_body["event_id"]
+        channel = self._send_relation(
+            RelationTypes.THREAD, "m.room.test", parent_id=thread_2
+        )
+        reply_2 = channel.json_body["event_id"]
+
+        # Request the threads in the room.
+        channel = self.make_request(
+            "GET",
+            f"/_matrix/client/v1/rooms/{self.room}/threads",
+            access_token=self.user_token,
+        )
+        self.assertEquals(200, channel.code, channel.json_body)
+        threads = self._get_threads(channel.json_body)
+        self.assertEqual(threads, [(thread_2, reply_2), (thread_1, reply_1)])
+
+        # Update the first thread, the ordering should swap.
+        channel = self._send_relation(RelationTypes.THREAD, "m.room.test")
+        reply_3 = channel.json_body["event_id"]
+
+        channel = self.make_request(
+            "GET",
+            f"/_matrix/client/v1/rooms/{self.room}/threads",
+            access_token=self.user_token,
+        )
+        self.assertEquals(200, channel.code, channel.json_body)
+        # Tuple of (thread ID, latest event ID) for each thread.
+        threads = self._get_threads(channel.json_body)
+        self.assertEqual(threads, [(thread_1, reply_3), (thread_2, reply_2)])
+
+    def test_pagination(self) -> None:
+        """Create threads and paginate through them."""
+        # Create 2 threads.
+        thread_1 = self.parent_id
+        res = self.helper.send(self.room, body="Thread Root!", tok=self.user_token)
+        thread_2 = res["event_id"]
+
+        self._send_relation(RelationTypes.THREAD, "m.room.test")
+        self._send_relation(RelationTypes.THREAD, "m.room.test", parent_id=thread_2)
+
+        # Request the threads in the room.
+        channel = self.make_request(
+            "GET",
+            f"/_matrix/client/v1/rooms/{self.room}/threads?limit=1",
+            access_token=self.user_token,
+        )
+        self.assertEquals(200, channel.code, channel.json_body)
+        thread_roots = [ev["event_id"] for ev in channel.json_body["chunk"]]
+        self.assertEqual(thread_roots, [thread_2])
+
+        # Make sure next_batch has something in it that looks like it could be a
+        # valid token.
+        next_batch = channel.json_body.get("next_batch")
+        self.assertIsInstance(next_batch, str, channel.json_body)
+
+        channel = self.make_request(
+            "GET",
+            f"/_matrix/client/v1/rooms/{self.room}/threads?limit=1&from={next_batch}",
+            access_token=self.user_token,
+        )
+        self.assertEquals(200, channel.code, channel.json_body)
+        thread_roots = [ev["event_id"] for ev in channel.json_body["chunk"]]
+        self.assertEqual(thread_roots, [thread_1], channel.json_body)
+
+        self.assertNotIn("next_batch", channel.json_body, channel.json_body)
+
+    def test_include(self) -> None:
+        """Filtering threads to all or participated in should work."""
+        # Thread 1 has the user as the root event.
+        thread_1 = self.parent_id
+        self._send_relation(
+            RelationTypes.THREAD, "m.room.test", access_token=self.user2_token
+        )
+
+        # Thread 2 has the user replying.
+        res = self.helper.send(self.room, body="Thread Root!", tok=self.user2_token)
+        thread_2 = res["event_id"]
+        self._send_relation(RelationTypes.THREAD, "m.room.test", parent_id=thread_2)
+
+        # Thread 3 has the user not participating in.
+        res = self.helper.send(self.room, body="Another thread!", tok=self.user2_token)
+        thread_3 = res["event_id"]
+        self._send_relation(
+            RelationTypes.THREAD,
+            "m.room.test",
+            access_token=self.user2_token,
+            parent_id=thread_3,
+        )
+
+        # All threads in the room.
+        channel = self.make_request(
+            "GET",
+            f"/_matrix/client/v1/rooms/{self.room}/threads",
+            access_token=self.user_token,
+        )
+        self.assertEquals(200, channel.code, channel.json_body)
+        thread_roots = [ev["event_id"] for ev in channel.json_body["chunk"]]
+        self.assertEqual(
+            thread_roots, [thread_3, thread_2, thread_1], channel.json_body
+        )
+
+        # Only participated threads.
+        channel = self.make_request(
+            "GET",
+            f"/_matrix/client/v1/rooms/{self.room}/threads?include=participated",
+            access_token=self.user_token,
+        )
+        self.assertEquals(200, channel.code, channel.json_body)
+        thread_roots = [ev["event_id"] for ev in channel.json_body["chunk"]]
+        self.assertEqual(thread_roots, [thread_2, thread_1], channel.json_body)
+
+    def test_ignored_user(self) -> None:
+        """Events from ignored users should be ignored."""
+        # Thread 1 has a reply from an ignored user.
+        thread_1 = self.parent_id
+        self._send_relation(
+            RelationTypes.THREAD, "m.room.test", access_token=self.user2_token
+        )
+
+        # Thread 2 is created by an ignored user.
+        res = self.helper.send(self.room, body="Thread Root!", tok=self.user2_token)
+        thread_2 = res["event_id"]
+        self._send_relation(RelationTypes.THREAD, "m.room.test", parent_id=thread_2)
+
+        # Ignore user2.
+        self.get_success(
+            self.store.add_account_data_for_user(
+                self.user_id,
+                AccountDataTypes.IGNORED_USER_LIST,
+                {"ignored_users": {self.user2_id: {}}},
+            )
+        )
+
+        # Only thread 1 is returned.
+        channel = self.make_request(
+            "GET",
+            f"/_matrix/client/v1/rooms/{self.room}/threads",
+            access_token=self.user_token,
+        )
+        self.assertEquals(200, channel.code, channel.json_body)
+        thread_roots = [ev["event_id"] for ev in channel.json_body["chunk"]]
+        self.assertEqual(thread_roots, [thread_1], channel.json_body)
diff --git a/tests/rest/client/test_rooms.py b/tests/rest/client/test_rooms.py
index 5e66b5b26c..71b1637be8 100644
--- a/tests/rest/client/test_rooms.py
+++ b/tests/rest/client/test_rooms.py
@@ -35,7 +35,6 @@ from synapse.api.constants import (
     EventTypes,
     Membership,
     PublicRoomsFilterFields,
-    RelationTypes,
     RoomTypes,
 )
 from synapse.api.errors import Codes, HttpResponseException
@@ -50,6 +49,7 @@ from synapse.util.stringutils import random_string
 
 from tests import unittest
 from tests.http.server._base import make_request_with_cancellation_test
+from tests.storage.test_stream import PaginationTestCase
 from tests.test_utils import make_awaitable
 
 PATH_PREFIX = b"/_matrix/client/api/v1"
@@ -2213,14 +2213,17 @@ class PublicRoomsRoomTypeFilterTestCase(unittest.HomeserverTestCase):
         )
 
     def make_public_rooms_request(
-        self, room_types: Union[List[Union[str, None]], None]
+        self,
+        room_types: Optional[List[Union[str, None]]],
+        instance_id: Optional[str] = None,
     ) -> Tuple[List[Dict[str, Any]], int]:
-        channel = self.make_request(
-            "POST",
-            self.url,
-            {"filter": {PublicRoomsFilterFields.ROOM_TYPES: room_types}},
-            self.token,
-        )
+        body: JsonDict = {"filter": {PublicRoomsFilterFields.ROOM_TYPES: room_types}}
+        if instance_id:
+            body["third_party_instance_id"] = "test|test"
+
+        channel = self.make_request("POST", self.url, body, self.token)
+        self.assertEqual(channel.code, 200)
+
         chunk = channel.json_body["chunk"]
         count = channel.json_body["total_room_count_estimate"]
 
@@ -2230,31 +2233,49 @@ class PublicRoomsRoomTypeFilterTestCase(unittest.HomeserverTestCase):
 
     def test_returns_both_rooms_and_spaces_if_no_filter(self) -> None:
         chunk, count = self.make_public_rooms_request(None)
-
         self.assertEqual(count, 2)
 
+        # Also check if there's no filter property at all in the body.
+        channel = self.make_request("POST", self.url, {}, self.token)
+        self.assertEqual(channel.code, 200)
+        self.assertEqual(len(channel.json_body["chunk"]), 2)
+        self.assertEqual(channel.json_body["total_room_count_estimate"], 2)
+
+        chunk, count = self.make_public_rooms_request(None, "test|test")
+        self.assertEqual(count, 0)
+
     def test_returns_only_rooms_based_on_filter(self) -> None:
         chunk, count = self.make_public_rooms_request([None])
 
         self.assertEqual(count, 1)
         self.assertEqual(chunk[0].get("room_type", None), None)
 
+        chunk, count = self.make_public_rooms_request([None], "test|test")
+        self.assertEqual(count, 0)
+
     def test_returns_only_space_based_on_filter(self) -> None:
         chunk, count = self.make_public_rooms_request(["m.space"])
 
         self.assertEqual(count, 1)
         self.assertEqual(chunk[0].get("room_type", None), "m.space")
 
+        chunk, count = self.make_public_rooms_request(["m.space"], "test|test")
+        self.assertEqual(count, 0)
+
     def test_returns_both_rooms_and_space_based_on_filter(self) -> None:
         chunk, count = self.make_public_rooms_request(["m.space", None])
-
         self.assertEqual(count, 2)
 
+        chunk, count = self.make_public_rooms_request(["m.space", None], "test|test")
+        self.assertEqual(count, 0)
+
     def test_returns_both_rooms_and_spaces_if_array_is_empty(self) -> None:
         chunk, count = self.make_public_rooms_request([])
-
         self.assertEqual(count, 2)
 
+        chunk, count = self.make_public_rooms_request([], "test|test")
+        self.assertEqual(count, 0)
+
 
 class PublicRoomsTestRemoteSearchFallbackTestCase(unittest.HomeserverTestCase):
     """Test that we correctly fallback to local filtering if a remote server
@@ -2894,149 +2915,20 @@ class LabelsTestCase(unittest.HomeserverTestCase):
         return event_id
 
 
-class RelationsTestCase(unittest.HomeserverTestCase):
-    servlets = [
-        synapse.rest.admin.register_servlets_for_client_rest_resource,
-        room.register_servlets,
-        login.register_servlets,
-    ]
-
-    def default_config(self) -> Dict[str, Any]:
-        config = super().default_config()
-        config["experimental_features"] = {"msc3440_enabled": True}
-        return config
-
-    def prepare(self, reactor: MemoryReactor, clock: Clock, hs: HomeServer) -> None:
-        self.user_id = self.register_user("test", "test")
-        self.tok = self.login("test", "test")
-        self.room_id = self.helper.create_room_as(self.user_id, tok=self.tok)
-
-        self.second_user_id = self.register_user("second", "test")
-        self.second_tok = self.login("second", "test")
-        self.helper.join(
-            room=self.room_id, user=self.second_user_id, tok=self.second_tok
-        )
-
-        self.third_user_id = self.register_user("third", "test")
-        self.third_tok = self.login("third", "test")
-        self.helper.join(room=self.room_id, user=self.third_user_id, tok=self.third_tok)
-
-        # An initial event with a relation from second user.
-        res = self.helper.send_event(
-            room_id=self.room_id,
-            type=EventTypes.Message,
-            content={"msgtype": "m.text", "body": "Message 1"},
-            tok=self.tok,
-        )
-        self.event_id_1 = res["event_id"]
-        self.helper.send_event(
-            room_id=self.room_id,
-            type="m.reaction",
-            content={
-                "m.relates_to": {
-                    "rel_type": RelationTypes.ANNOTATION,
-                    "event_id": self.event_id_1,
-                    "key": "👍",
-                }
-            },
-            tok=self.second_tok,
-        )
-
-        # Another event with a relation from third user.
-        res = self.helper.send_event(
-            room_id=self.room_id,
-            type=EventTypes.Message,
-            content={"msgtype": "m.text", "body": "Message 2"},
-            tok=self.tok,
-        )
-        self.event_id_2 = res["event_id"]
-        self.helper.send_event(
-            room_id=self.room_id,
-            type="m.reaction",
-            content={
-                "m.relates_to": {
-                    "rel_type": RelationTypes.REFERENCE,
-                    "event_id": self.event_id_2,
-                }
-            },
-            tok=self.third_tok,
-        )
-
-        # An event with no relations.
-        self.helper.send_event(
-            room_id=self.room_id,
-            type=EventTypes.Message,
-            content={"msgtype": "m.text", "body": "No relations"},
-            tok=self.tok,
-        )
-
-    def _filter_messages(self, filter: JsonDict) -> List[JsonDict]:
+class RelationsTestCase(PaginationTestCase):
+    def _filter_messages(self, filter: JsonDict) -> List[str]:
         """Make a request to /messages with a filter, returns the chunk of events."""
+        from_token = self.get_success(
+            self.from_token.to_string(self.hs.get_datastores().main)
+        )
         channel = self.make_request(
             "GET",
-            "/rooms/%s/messages?filter=%s&dir=b" % (self.room_id, json.dumps(filter)),
+            f"/rooms/{self.room_id}/messages?filter={json.dumps(filter)}&dir=f&from={from_token}",
             access_token=self.tok,
         )
         self.assertEqual(channel.code, HTTPStatus.OK, channel.result)
 
-        return channel.json_body["chunk"]
-
-    def test_filter_relation_senders(self) -> None:
-        # Messages which second user reacted to.
-        filter = {"related_by_senders": [self.second_user_id]}
-        chunk = self._filter_messages(filter)
-        self.assertEqual(len(chunk), 1, chunk)
-        self.assertEqual(chunk[0]["event_id"], self.event_id_1)
-
-        # Messages which third user reacted to.
-        filter = {"related_by_senders": [self.third_user_id]}
-        chunk = self._filter_messages(filter)
-        self.assertEqual(len(chunk), 1, chunk)
-        self.assertEqual(chunk[0]["event_id"], self.event_id_2)
-
-        # Messages which either user reacted to.
-        filter = {"related_by_senders": [self.second_user_id, self.third_user_id]}
-        chunk = self._filter_messages(filter)
-        self.assertEqual(len(chunk), 2, chunk)
-        self.assertCountEqual(
-            [c["event_id"] for c in chunk], [self.event_id_1, self.event_id_2]
-        )
-
-    def test_filter_relation_type(self) -> None:
-        # Messages which have annotations.
-        filter = {"related_by_rel_types": [RelationTypes.ANNOTATION]}
-        chunk = self._filter_messages(filter)
-        self.assertEqual(len(chunk), 1, chunk)
-        self.assertEqual(chunk[0]["event_id"], self.event_id_1)
-
-        # Messages which have references.
-        filter = {"related_by_rel_types": [RelationTypes.REFERENCE]}
-        chunk = self._filter_messages(filter)
-        self.assertEqual(len(chunk), 1, chunk)
-        self.assertEqual(chunk[0]["event_id"], self.event_id_2)
-
-        # Messages which have either annotations or references.
-        filter = {
-            "related_by_rel_types": [
-                RelationTypes.ANNOTATION,
-                RelationTypes.REFERENCE,
-            ]
-        }
-        chunk = self._filter_messages(filter)
-        self.assertEqual(len(chunk), 2, chunk)
-        self.assertCountEqual(
-            [c["event_id"] for c in chunk], [self.event_id_1, self.event_id_2]
-        )
-
-    def test_filter_relation_senders_and_type(self) -> None:
-        # Messages which second user reacted to.
-        filter = {
-            "related_by_senders": [self.second_user_id],
-            "related_by_rel_types": [RelationTypes.ANNOTATION],
-        }
-        chunk = self._filter_messages(filter)
-        self.assertEqual(len(chunk), 1, chunk)
-        self.assertEqual(chunk[0]["event_id"], self.event_id_1)
+        return [ev["event_id"] for ev in channel.json_body["chunk"]]
 
 
 class ContextTestCase(unittest.HomeserverTestCase):
diff --git a/tests/rest/client/test_typing.py b/tests/rest/client/test_typing.py
index 61b66d7685..fdc433a8b5 100644
--- a/tests/rest/client/test_typing.py
+++ b/tests/rest/client/test_typing.py
@@ -59,7 +59,8 @@ class RoomTypingTestCase(unittest.HomeserverTestCase):
             self.event_source.get_new_events(
                 user=UserID.from_string(self.user_id),
                 from_key=0,
-                limit=None,
+                # Limit is unused.
+                limit=0,
                 room_ids=[self.room_id],
                 is_guest=False,
             )
diff --git a/tests/rest/media/v1/test_oembed.py b/tests/rest/media/v1/test_oembed.py
index f38d7225f8..319ae8b1cc 100644
--- a/tests/rest/media/v1/test_oembed.py
+++ b/tests/rest/media/v1/test_oembed.py
@@ -14,6 +14,8 @@
 
 import json
 
+from parameterized import parameterized
+
 from twisted.test.proto_helpers import MemoryReactor
 
 from synapse.rest.media.v1.oembed import OEmbedProvider, OEmbedResult
@@ -23,8 +25,16 @@ from synapse.util import Clock
 
 from tests.unittest import HomeserverTestCase
 
+try:
+    import lxml
+except ImportError:
+    lxml = None
+
 
 class OEmbedTests(HomeserverTestCase):
+    if not lxml:
+        skip = "url preview feature requires lxml"
+
     def prepare(self, reactor: MemoryReactor, clock: Clock, hs: HomeServer) -> None:
         self.oembed = OEmbedProvider(hs)
 
@@ -36,7 +46,7 @@ class OEmbedTests(HomeserverTestCase):
     def test_version(self) -> None:
         """Accept versions that are similar to 1.0 as a string or int (or missing)."""
         for version in ("1.0", 1.0, 1):
-            result = self.parse_response({"version": version, "type": "link"})
+            result = self.parse_response({"version": version})
             # An empty Open Graph response is an error, ensure the URL is included.
             self.assertIn("og:url", result.open_graph_result)
 
@@ -49,3 +59,94 @@ class OEmbedTests(HomeserverTestCase):
             result = self.parse_response({"version": version, "type": "link"})
             # An empty Open Graph response is an error, ensure the URL is included.
             self.assertEqual({}, result.open_graph_result)
+
+    def test_cache_age(self) -> None:
+        """Ensure a cache-age is parsed properly."""
+        # Correct-ish cache ages are allowed.
+        for cache_age in ("1", 1.0, 1):
+            result = self.parse_response({"cache_age": cache_age})
+            self.assertEqual(result.cache_age, 1000)
+
+        # Invalid cache ages are ignored.
+        for cache_age in ("invalid", {}):
+            result = self.parse_response({"cache_age": cache_age})
+            self.assertIsNone(result.cache_age)
+
+        # Cache age is optional.
+        result = self.parse_response({})
+        self.assertIsNone(result.cache_age)
+
+    @parameterized.expand(
+        [
+            ("title", "title"),
+            ("provider_name", "site_name"),
+            ("thumbnail_url", "image"),
+        ],
+        name_func=lambda func, num, p: f"{func.__name__}_{p.args[0]}",
+    )
+    def test_property(self, oembed_property: str, open_graph_property: str) -> None:
+        """Test properties which must be strings."""
+        result = self.parse_response({oembed_property: "test"})
+        self.assertIn(f"og:{open_graph_property}", result.open_graph_result)
+        self.assertEqual(result.open_graph_result[f"og:{open_graph_property}"], "test")
+
+        result = self.parse_response({oembed_property: 1})
+        self.assertNotIn(f"og:{open_graph_property}", result.open_graph_result)
+
+    def test_author_name(self) -> None:
+        """Test the author_name property."""
+        result = self.parse_response({"author_name": "test"})
+        self.assertEqual(result.author_name, "test")
+
+        result = self.parse_response({"author_name": 1})
+        self.assertIsNone(result.author_name)
+
+    def test_rich(self) -> None:
+        """Test a type of rich."""
+        result = self.parse_response({"html": "test<img src='foo'>", "type": "rich"})
+        self.assertIn("og:description", result.open_graph_result)
+        self.assertIn("og:image", result.open_graph_result)
+        self.assertEqual(result.open_graph_result["og:description"], "test")
+        self.assertEqual(result.open_graph_result["og:image"], "foo")
+
+        result = self.parse_response({"type": "rich"})
+        self.assertNotIn("og:description", result.open_graph_result)
+
+        result = self.parse_response({"html": 1, "type": "rich"})
+        self.assertNotIn("og:description", result.open_graph_result)
+
+    def test_photo(self) -> None:
+        """Test a type of photo."""
+        result = self.parse_response({"url": "test", "type": "photo"})
+        self.assertIn("og:image", result.open_graph_result)
+        self.assertEqual(result.open_graph_result["og:image"], "test")
+
+        result = self.parse_response({"type": "photo"})
+        self.assertNotIn("og:image", result.open_graph_result)
+
+        result = self.parse_response({"url": 1, "type": "photo"})
+        self.assertNotIn("og:image", result.open_graph_result)
+
+    def test_video(self) -> None:
+        """Test a type of video."""
+        result = self.parse_response({"html": "test", "type": "video"})
+        self.assertIn("og:type", result.open_graph_result)
+        self.assertEqual(result.open_graph_result["og:type"], "video.other")
+        self.assertIn("og:description", result.open_graph_result)
+        self.assertEqual(result.open_graph_result["og:description"], "test")
+
+        result = self.parse_response({"type": "video"})
+        self.assertIn("og:type", result.open_graph_result)
+        self.assertEqual(result.open_graph_result["og:type"], "video.other")
+        self.assertNotIn("og:description", result.open_graph_result)
+
+        result = self.parse_response({"url": 1, "type": "video"})
+        self.assertIn("og:type", result.open_graph_result)
+        self.assertEqual(result.open_graph_result["og:type"], "video.other")
+        self.assertNotIn("og:description", result.open_graph_result)
+
+    def test_link(self) -> None:
+        """Test type of link."""
+        result = self.parse_response({"type": "link"})
+        self.assertIn("og:type", result.open_graph_result)
+        self.assertEqual(result.open_graph_result["og:type"], "website")
diff --git a/tests/storage/databases/main/test_events_worker.py b/tests/storage/databases/main/test_events_worker.py
index 32a798d74b..5773172ab8 100644
--- a/tests/storage/databases/main/test_events_worker.py
+++ b/tests/storage/databases/main/test_events_worker.py
@@ -90,18 +90,6 @@ class HaveSeenEventsTestCase(unittest.HomeserverTestCase):
             self.assertEqual(res, {self.event_ids[0]})
             self.assertEqual(ctx.get_resource_usage().db_txn_count, 0)
 
-    def test_query_via_event_cache(self):
-        # fetch an event into the event cache
-        self.get_success(self.store.get_event(self.event_ids[0]))
-
-        # looking it up should now cause no db hits
-        with LoggingContext(name="test") as ctx:
-            res = self.get_success(
-                self.store.have_seen_events(self.room_id, [self.event_ids[0]])
-            )
-            self.assertEqual(res, {self.event_ids[0]})
-            self.assertEqual(ctx.get_resource_usage().db_txn_count, 0)
-
     def test_persisting_event_invalidates_cache(self):
         """
         Test to make sure that the `have_seen_event` cache
diff --git a/tests/storage/test_event_federation.py b/tests/storage/test_event_federation.py
index 59b8910907..853db930d6 100644
--- a/tests/storage/test_event_federation.py
+++ b/tests/storage/test_event_federation.py
@@ -27,6 +27,8 @@ from synapse.api.room_versions import (
     RoomVersion,
 )
 from synapse.events import _EventInternalMetadata
+from synapse.rest import admin
+from synapse.rest.client import login, room
 from synapse.server import HomeServer
 from synapse.storage.database import LoggingTransaction
 from synapse.types import JsonDict
@@ -43,6 +45,12 @@ class _BackfillSetupInfo:
 
 
 class EventFederationWorkerStoreTestCase(tests.unittest.HomeserverTestCase):
+    servlets = [
+        admin.register_servlets,
+        room.register_servlets,
+        login.register_servlets,
+    ]
+
     def prepare(self, reactor: MemoryReactor, clock: Clock, hs: HomeServer) -> None:
         self.store = hs.get_datastores().main
 
@@ -1122,6 +1130,62 @@ class EventFederationWorkerStoreTestCase(tests.unittest.HomeserverTestCase):
         backfill_event_ids = [backfill_point[0] for backfill_point in backfill_points]
         self.assertEqual(backfill_event_ids, ["insertion_eventA"])
 
+    def test_get_event_ids_to_not_pull_from_backoff(
+        self,
+    ):
+        """
+        Test to make sure only event IDs we should backoff from are returned.
+        """
+        # Create the room
+        user_id = self.register_user("alice", "test")
+        tok = self.login("alice", "test")
+        room_id = self.helper.create_room_as(room_creator=user_id, tok=tok)
+
+        self.get_success(
+            self.store.record_event_failed_pull_attempt(
+                room_id, "$failed_event_id", "fake cause"
+            )
+        )
+
+        event_ids_to_backoff = self.get_success(
+            self.store.get_event_ids_to_not_pull_from_backoff(
+                room_id=room_id, event_ids=["$failed_event_id", "$normal_event_id"]
+            )
+        )
+
+        self.assertEqual(event_ids_to_backoff, ["$failed_event_id"])
+
+    def test_get_event_ids_to_not_pull_from_backoff_retry_after_backoff_duration(
+        self,
+    ):
+        """
+        Test to make sure no event IDs are returned after the backoff duration has
+        elapsed.
+        """
+        # Create the room
+        user_id = self.register_user("alice", "test")
+        tok = self.login("alice", "test")
+        room_id = self.helper.create_room_as(room_creator=user_id, tok=tok)
+
+        self.get_success(
+            self.store.record_event_failed_pull_attempt(
+                room_id, "$failed_event_id", "fake cause"
+            )
+        )
+
+        # Now advance time by 2 hours so we wait long enough for the single failed
+        # attempt (2^1 hours).
+        self.reactor.advance(datetime.timedelta(hours=2).total_seconds())
+
+        event_ids_to_backoff = self.get_success(
+            self.store.get_event_ids_to_not_pull_from_backoff(
+                room_id=room_id, event_ids=["$failed_event_id", "$normal_event_id"]
+            )
+        )
+        # Since this function only returns events we should backoff from, time has
+        # elapsed past the backoff range so there is no events to backoff from.
+        self.assertEqual(event_ids_to_backoff, [])
+
 
 @attr.s
 class FakeEvent:
diff --git a/tests/storage/test_event_push_actions.py b/tests/storage/test_event_push_actions.py
index 473c965e19..ee48920f84 100644
--- a/tests/storage/test_event_push_actions.py
+++ b/tests/storage/test_event_push_actions.py
@@ -12,14 +12,16 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
-from typing import Tuple
+from typing import Optional, Tuple
 
 from twisted.test.proto_helpers import MemoryReactor
 
+from synapse.api.constants import MAIN_TIMELINE, RelationTypes
 from synapse.rest import admin
 from synapse.rest.client import login, room
 from synapse.server import HomeServer
 from synapse.storage.databases.main.event_push_actions import NotifCounts
+from synapse.types import JsonDict
 from synapse.util import Clock
 
 from tests.unittest import HomeserverTestCase
@@ -64,16 +66,23 @@ class EventPushActionsStoreTestCase(HomeserverTestCase):
         user_id, token, _, other_token, room_id = self._create_users_and_room()
 
         # Create two events, one of which is a highlight.
-        self.helper.send_event(
+        first_event_id = self.helper.send_event(
             room_id,
             type="m.room.message",
             content={"msgtype": "m.text", "body": "msg"},
             tok=other_token,
-        )
-        event_id = self.helper.send_event(
+        )["event_id"]
+        second_event_id = self.helper.send_event(
             room_id,
             type="m.room.message",
-            content={"msgtype": "m.text", "body": user_id},
+            content={
+                "msgtype": "m.text",
+                "body": user_id,
+                "m.relates_to": {
+                    "rel_type": RelationTypes.THREAD,
+                    "event_id": first_event_id,
+                },
+            },
             tok=other_token,
         )["event_id"]
 
@@ -93,13 +102,13 @@ class EventPushActionsStoreTestCase(HomeserverTestCase):
         )
         self.assertEqual(2, len(email_actions))
 
-        # Send a receipt, which should clear any actions.
+        # Send a receipt, which should clear the first action.
         self.get_success(
             self.store.insert_receipt(
                 room_id,
                 "m.read",
                 user_id=user_id,
-                event_ids=[event_id],
+                event_ids=[first_event_id],
                 thread_id=None,
                 data={},
             )
@@ -109,6 +118,30 @@ class EventPushActionsStoreTestCase(HomeserverTestCase):
                 user_id, 0, 1000, 20
             )
         )
+        self.assertEqual(1, len(http_actions))
+        email_actions = self.get_success(
+            self.store.get_unread_push_actions_for_user_in_range_for_email(
+                user_id, 0, 1000, 20
+            )
+        )
+        self.assertEqual(1, len(email_actions))
+
+        # Send a thread receipt to clear the thread action.
+        self.get_success(
+            self.store.insert_receipt(
+                room_id,
+                "m.read",
+                user_id=user_id,
+                event_ids=[second_event_id],
+                thread_id=first_event_id,
+                data={},
+            )
+        )
+        http_actions = self.get_success(
+            self.store.get_unread_push_actions_for_user_in_range_for_http(
+                user_id, 0, 1000, 20
+            )
+        )
         self.assertEqual([], http_actions)
         email_actions = self.get_success(
             self.store.get_unread_push_actions_for_user_in_range_for_email(
@@ -133,13 +166,14 @@ class EventPushActionsStoreTestCase(HomeserverTestCase):
                 )
             )
             self.assertEqual(
-                counts,
+                counts.main_timeline,
                 NotifCounts(
                     notify_count=noitf_count,
                     unread_count=0,
                     highlight_count=highlight_count,
                 ),
             )
+            self.assertEqual(counts.threads, {})
 
         def _create_event(highlight: bool = False) -> str:
             result = self.helper.send_event(
@@ -186,6 +220,7 @@ class EventPushActionsStoreTestCase(HomeserverTestCase):
         _assert_counts(0, 0)
 
         _create_event()
+        _assert_counts(1, 0)
         _rotate()
         _assert_counts(1, 0)
 
@@ -236,6 +271,444 @@ class EventPushActionsStoreTestCase(HomeserverTestCase):
         _rotate()
         _assert_counts(0, 0)
 
+    def test_count_aggregation_threads(self) -> None:
+        """
+        This is essentially the same test as test_count_aggregation, but adds
+        events to the main timeline and to a thread.
+        """
+
+        user_id, token, _, other_token, room_id = self._create_users_and_room()
+        thread_id: str
+
+        last_event_id: str
+
+        def _assert_counts(
+            noitf_count: int,
+            highlight_count: int,
+            thread_notif_count: int,
+            thread_highlight_count: int,
+        ) -> None:
+            counts = self.get_success(
+                self.store.db_pool.runInteraction(
+                    "get-unread-counts",
+                    self.store._get_unread_counts_by_receipt_txn,
+                    room_id,
+                    user_id,
+                )
+            )
+            self.assertEqual(
+                counts.main_timeline,
+                NotifCounts(
+                    notify_count=noitf_count,
+                    unread_count=0,
+                    highlight_count=highlight_count,
+                ),
+            )
+            if thread_notif_count or thread_highlight_count:
+                self.assertEqual(
+                    counts.threads,
+                    {
+                        thread_id: NotifCounts(
+                            notify_count=thread_notif_count,
+                            unread_count=0,
+                            highlight_count=thread_highlight_count,
+                        ),
+                    },
+                )
+            else:
+                self.assertEqual(counts.threads, {})
+
+        def _create_event(
+            highlight: bool = False, thread_id: Optional[str] = None
+        ) -> str:
+            content: JsonDict = {
+                "msgtype": "m.text",
+                "body": user_id if highlight else "msg",
+            }
+            if thread_id:
+                content["m.relates_to"] = {
+                    "rel_type": "m.thread",
+                    "event_id": thread_id,
+                }
+
+            result = self.helper.send_event(
+                room_id,
+                type="m.room.message",
+                content=content,
+                tok=other_token,
+            )
+            nonlocal last_event_id
+            last_event_id = result["event_id"]
+            return last_event_id
+
+        def _rotate() -> None:
+            self.get_success(self.store._rotate_notifs())
+
+        def _mark_read(event_id: str, thread_id: str = MAIN_TIMELINE) -> None:
+            self.get_success(
+                self.store.insert_receipt(
+                    room_id,
+                    "m.read",
+                    user_id=user_id,
+                    event_ids=[event_id],
+                    thread_id=thread_id,
+                    data={},
+                )
+            )
+
+        _assert_counts(0, 0, 0, 0)
+        thread_id = _create_event()
+        _assert_counts(1, 0, 0, 0)
+        _rotate()
+        _assert_counts(1, 0, 0, 0)
+
+        _create_event(thread_id=thread_id)
+        _assert_counts(1, 0, 1, 0)
+        _rotate()
+        _assert_counts(1, 0, 1, 0)
+
+        _create_event()
+        _assert_counts(2, 0, 1, 0)
+        _rotate()
+        _assert_counts(2, 0, 1, 0)
+
+        event_id = _create_event(thread_id=thread_id)
+        _assert_counts(2, 0, 2, 0)
+        _rotate()
+        _assert_counts(2, 0, 2, 0)
+
+        _create_event()
+        _create_event(thread_id=thread_id)
+        _mark_read(event_id)
+        _assert_counts(1, 0, 3, 0)
+        _mark_read(event_id, thread_id)
+        _assert_counts(1, 0, 1, 0)
+
+        _mark_read(last_event_id)
+        _mark_read(last_event_id, thread_id)
+        _assert_counts(0, 0, 0, 0)
+
+        _create_event()
+        _create_event(thread_id=thread_id)
+        _assert_counts(1, 0, 1, 0)
+        _rotate()
+        _assert_counts(1, 0, 1, 0)
+
+        # Delete old event push actions, this should not affect the (summarised) count.
+        self.get_success(self.store._remove_old_push_actions_that_have_rotated())
+        _assert_counts(1, 0, 1, 0)
+
+        _mark_read(last_event_id)
+        _mark_read(last_event_id, thread_id)
+        _assert_counts(0, 0, 0, 0)
+
+        _create_event(True)
+        _assert_counts(1, 1, 0, 0)
+        _rotate()
+        _assert_counts(1, 1, 0, 0)
+
+        event_id = _create_event(True, thread_id)
+        _assert_counts(1, 1, 1, 1)
+        _rotate()
+        _assert_counts(1, 1, 1, 1)
+
+        # Check that adding another notification and rotating after highlight
+        # works.
+        _create_event()
+        _rotate()
+        _assert_counts(2, 1, 1, 1)
+
+        _create_event(thread_id=thread_id)
+        _rotate()
+        _assert_counts(2, 1, 2, 1)
+
+        # Check that sending read receipts at different points results in the
+        # right counts.
+        _mark_read(event_id)
+        _assert_counts(1, 0, 2, 1)
+        _mark_read(event_id, thread_id)
+        _assert_counts(1, 0, 1, 0)
+        _mark_read(last_event_id)
+        _assert_counts(0, 0, 1, 0)
+        _mark_read(last_event_id, thread_id)
+        _assert_counts(0, 0, 0, 0)
+
+        _create_event(True)
+        _create_event(True, thread_id)
+        _assert_counts(1, 1, 1, 1)
+        _mark_read(last_event_id)
+        _mark_read(last_event_id, thread_id)
+        _assert_counts(0, 0, 0, 0)
+        _rotate()
+        _assert_counts(0, 0, 0, 0)
+
+    def test_count_aggregation_mixed(self) -> None:
+        """
+        This is essentially the same test as test_count_aggregation_threads, but
+        sends both unthreaded and threaded receipts.
+        """
+
+        user_id, token, _, other_token, room_id = self._create_users_and_room()
+        thread_id: str
+
+        last_event_id: str
+
+        def _assert_counts(
+            noitf_count: int,
+            highlight_count: int,
+            thread_notif_count: int,
+            thread_highlight_count: int,
+        ) -> None:
+            counts = self.get_success(
+                self.store.db_pool.runInteraction(
+                    "get-unread-counts",
+                    self.store._get_unread_counts_by_receipt_txn,
+                    room_id,
+                    user_id,
+                )
+            )
+            self.assertEqual(
+                counts.main_timeline,
+                NotifCounts(
+                    notify_count=noitf_count,
+                    unread_count=0,
+                    highlight_count=highlight_count,
+                ),
+            )
+            if thread_notif_count or thread_highlight_count:
+                self.assertEqual(
+                    counts.threads,
+                    {
+                        thread_id: NotifCounts(
+                            notify_count=thread_notif_count,
+                            unread_count=0,
+                            highlight_count=thread_highlight_count,
+                        ),
+                    },
+                )
+            else:
+                self.assertEqual(counts.threads, {})
+
+        def _create_event(
+            highlight: bool = False, thread_id: Optional[str] = None
+        ) -> str:
+            content: JsonDict = {
+                "msgtype": "m.text",
+                "body": user_id if highlight else "msg",
+            }
+            if thread_id:
+                content["m.relates_to"] = {
+                    "rel_type": "m.thread",
+                    "event_id": thread_id,
+                }
+
+            result = self.helper.send_event(
+                room_id,
+                type="m.room.message",
+                content=content,
+                tok=other_token,
+            )
+            nonlocal last_event_id
+            last_event_id = result["event_id"]
+            return last_event_id
+
+        def _rotate() -> None:
+            self.get_success(self.store._rotate_notifs())
+
+        def _mark_read(event_id: str, thread_id: Optional[str] = None) -> None:
+            self.get_success(
+                self.store.insert_receipt(
+                    room_id,
+                    "m.read",
+                    user_id=user_id,
+                    event_ids=[event_id],
+                    thread_id=thread_id,
+                    data={},
+                )
+            )
+
+        _assert_counts(0, 0, 0, 0)
+        thread_id = _create_event()
+        _assert_counts(1, 0, 0, 0)
+        _rotate()
+        _assert_counts(1, 0, 0, 0)
+
+        _create_event(thread_id=thread_id)
+        _assert_counts(1, 0, 1, 0)
+        _rotate()
+        _assert_counts(1, 0, 1, 0)
+
+        _create_event()
+        _assert_counts(2, 0, 1, 0)
+        _rotate()
+        _assert_counts(2, 0, 1, 0)
+
+        event_id = _create_event(thread_id=thread_id)
+        _assert_counts(2, 0, 2, 0)
+        _rotate()
+        _assert_counts(2, 0, 2, 0)
+
+        _create_event()
+        _create_event(thread_id=thread_id)
+        _mark_read(event_id)
+        _assert_counts(1, 0, 1, 0)
+
+        _mark_read(last_event_id, MAIN_TIMELINE)
+        _mark_read(last_event_id, thread_id)
+        _assert_counts(0, 0, 0, 0)
+
+        _create_event()
+        _create_event(thread_id=thread_id)
+        _assert_counts(1, 0, 1, 0)
+        _rotate()
+        _assert_counts(1, 0, 1, 0)
+
+        # Delete old event push actions, this should not affect the (summarised) count.
+        self.get_success(self.store._remove_old_push_actions_that_have_rotated())
+        _assert_counts(1, 0, 1, 0)
+
+        _mark_read(last_event_id)
+        _assert_counts(0, 0, 0, 0)
+
+        _create_event(True)
+        _assert_counts(1, 1, 0, 0)
+        _rotate()
+        _assert_counts(1, 1, 0, 0)
+
+        event_id = _create_event(True, thread_id)
+        _assert_counts(1, 1, 1, 1)
+        _rotate()
+        _assert_counts(1, 1, 1, 1)
+
+        # Check that adding another notification and rotating after highlight
+        # works.
+        _create_event()
+        _rotate()
+        _assert_counts(2, 1, 1, 1)
+
+        _create_event(thread_id=thread_id)
+        _rotate()
+        _assert_counts(2, 1, 2, 1)
+
+        # Check that sending read receipts at different points results in the
+        # right counts.
+        _mark_read(event_id)
+        _assert_counts(1, 0, 1, 0)
+        _mark_read(event_id, MAIN_TIMELINE)
+        _assert_counts(1, 0, 1, 0)
+        _mark_read(last_event_id, MAIN_TIMELINE)
+        _assert_counts(0, 0, 1, 0)
+        _mark_read(last_event_id, thread_id)
+        _assert_counts(0, 0, 0, 0)
+
+        _create_event(True)
+        _create_event(True, thread_id)
+        _assert_counts(1, 1, 1, 1)
+        _mark_read(last_event_id)
+        _assert_counts(0, 0, 0, 0)
+        _rotate()
+        _assert_counts(0, 0, 0, 0)
+
+    def test_recursive_thread(self) -> None:
+        """
+        Events related to events in a thread should still be considered part of
+        that thread.
+        """
+
+        # Create a user to receive notifications and send receipts.
+        user_id = self.register_user("user1235", "pass")
+        token = self.login("user1235", "pass")
+
+        # And another users to send events.
+        other_id = self.register_user("other", "pass")
+        other_token = self.login("other", "pass")
+
+        # Create a room and put both users in it.
+        room_id = self.helper.create_room_as(user_id, tok=token)
+        self.helper.join(room_id, other_id, tok=other_token)
+
+        # Update the user's push rules to care about reaction events.
+        self.get_success(
+            self.store.add_push_rule(
+                user_id,
+                "related_events",
+                priority_class=5,
+                conditions=[
+                    {"kind": "event_match", "key": "type", "pattern": "m.reaction"}
+                ],
+                actions=["notify"],
+            )
+        )
+
+        def _create_event(type: str, content: JsonDict) -> str:
+            result = self.helper.send_event(
+                room_id, type=type, content=content, tok=other_token
+            )
+            return result["event_id"]
+
+        def _assert_counts(noitf_count: int, thread_notif_count: int) -> None:
+            counts = self.get_success(
+                self.store.db_pool.runInteraction(
+                    "get-unread-counts",
+                    self.store._get_unread_counts_by_receipt_txn,
+                    room_id,
+                    user_id,
+                )
+            )
+            self.assertEqual(
+                counts.main_timeline,
+                NotifCounts(
+                    notify_count=noitf_count, unread_count=0, highlight_count=0
+                ),
+            )
+            if thread_notif_count:
+                self.assertEqual(
+                    counts.threads,
+                    {
+                        thread_id: NotifCounts(
+                            notify_count=thread_notif_count,
+                            unread_count=0,
+                            highlight_count=0,
+                        ),
+                    },
+                )
+            else:
+                self.assertEqual(counts.threads, {})
+
+        # Create a root event.
+        thread_id = _create_event(
+            "m.room.message", {"msgtype": "m.text", "body": "msg"}
+        )
+        _assert_counts(1, 0)
+
+        # Reply, creating a thread.
+        reply_id = _create_event(
+            "m.room.message",
+            {
+                "msgtype": "m.text",
+                "body": "msg",
+                "m.relates_to": {
+                    "rel_type": "m.thread",
+                    "event_id": thread_id,
+                },
+            },
+        )
+        _assert_counts(1, 1)
+
+        # Create an event related to a thread event, this should still appear in
+        # the thread.
+        _create_event(
+            type="m.reaction",
+            content={
+                "m.relates_to": {
+                    "rel_type": "m.annotation",
+                    "event_id": reply_id,
+                    "key": "A",
+                }
+            },
+        )
+        _assert_counts(1, 2)
+
     def test_find_first_stream_ordering_after_ts(self) -> None:
         def add_event(so: int, ts: int) -> None:
             self.get_success(
diff --git a/tests/storage/test_relations.py b/tests/storage/test_relations.py
new file mode 100644
index 0000000000..cd1d00208b
--- /dev/null
+++ b/tests/storage/test_relations.py
@@ -0,0 +1,111 @@
+# Copyright 2022 The Matrix.org Foundation C.I.C.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+from twisted.test.proto_helpers import MemoryReactor
+
+from synapse.api.constants import MAIN_TIMELINE
+from synapse.server import HomeServer
+from synapse.util import Clock
+
+from tests import unittest
+
+
+class RelationsStoreTestCase(unittest.HomeserverTestCase):
+    def prepare(self, reactor: MemoryReactor, clock: Clock, hs: HomeServer) -> None:
+        """
+        Creates a DAG:
+
+            A <---[m.thread]-- B <--[m.annotation]-- C
+            ^
+            |--[m.reference]-- D <--[m.annotation]-- E
+
+            F <--[m.annotation]-- G
+
+        """
+        self._main_store = self.hs.get_datastores().main
+
+        self._create_relation("A", "B", "m.thread")
+        self._create_relation("B", "C", "m.annotation")
+        self._create_relation("A", "D", "m.reference")
+        self._create_relation("D", "E", "m.annotation")
+        self._create_relation("F", "G", "m.annotation")
+
+    def _create_relation(self, parent_id: str, event_id: str, rel_type: str) -> None:
+        self.get_success(
+            self._main_store.db_pool.simple_insert(
+                table="event_relations",
+                values={
+                    "event_id": event_id,
+                    "relates_to_id": parent_id,
+                    "relation_type": rel_type,
+                },
+            )
+        )
+
+    def test_get_thread_id(self) -> None:
+        """
+        Ensure that get_thread_id only searches up the tree for threads.
+        """
+        # The thread itself and children of it return the thread.
+        thread_id = self.get_success(self._main_store.get_thread_id("B"))
+        self.assertEqual("A", thread_id)
+
+        thread_id = self.get_success(self._main_store.get_thread_id("C"))
+        self.assertEqual("A", thread_id)
+
+        # But the root and events related to the root do not.
+        thread_id = self.get_success(self._main_store.get_thread_id("A"))
+        self.assertEqual(MAIN_TIMELINE, thread_id)
+
+        thread_id = self.get_success(self._main_store.get_thread_id("D"))
+        self.assertEqual(MAIN_TIMELINE, thread_id)
+
+        thread_id = self.get_success(self._main_store.get_thread_id("E"))
+        self.assertEqual(MAIN_TIMELINE, thread_id)
+
+        # Events which are not related to a thread at all should return the
+        # main timeline.
+        thread_id = self.get_success(self._main_store.get_thread_id("F"))
+        self.assertEqual(MAIN_TIMELINE, thread_id)
+
+        thread_id = self.get_success(self._main_store.get_thread_id("G"))
+        self.assertEqual(MAIN_TIMELINE, thread_id)
+
+    def test_get_thread_id_for_receipts(self) -> None:
+        """
+        Ensure that get_thread_id_for_receipts searches up and down the tree for a thread.
+        """
+        # All of the events are considered related to this thread.
+        thread_id = self.get_success(self._main_store.get_thread_id_for_receipts("A"))
+        self.assertEqual("A", thread_id)
+
+        thread_id = self.get_success(self._main_store.get_thread_id_for_receipts("B"))
+        self.assertEqual("A", thread_id)
+
+        thread_id = self.get_success(self._main_store.get_thread_id_for_receipts("C"))
+        self.assertEqual("A", thread_id)
+
+        thread_id = self.get_success(self._main_store.get_thread_id_for_receipts("D"))
+        self.assertEqual("A", thread_id)
+
+        thread_id = self.get_success(self._main_store.get_thread_id_for_receipts("E"))
+        self.assertEqual("A", thread_id)
+
+        # Events which are not related to a thread at all should return the
+        # main timeline.
+        thread_id = self.get_success(self._main_store.get_thread_id("F"))
+        self.assertEqual(MAIN_TIMELINE, thread_id)
+
+        thread_id = self.get_success(self._main_store.get_thread_id("G"))
+        self.assertEqual(MAIN_TIMELINE, thread_id)
diff --git a/tests/storage/test_stream.py b/tests/storage/test_stream.py
index 78663a53fe..34fa810cf6 100644
--- a/tests/storage/test_stream.py
+++ b/tests/storage/test_stream.py
@@ -16,7 +16,6 @@ from typing import List
 
 from synapse.api.constants import EventTypes, RelationTypes
 from synapse.api.filtering import Filter
-from synapse.events import EventBase
 from synapse.rest import admin
 from synapse.rest.client import login, room
 from synapse.types import JsonDict
@@ -40,7 +39,7 @@ class PaginationTestCase(HomeserverTestCase):
 
     def default_config(self):
         config = super().default_config()
-        config["experimental_features"] = {"msc3440_enabled": True}
+        config["experimental_features"] = {"msc3874_enabled": True}
         return config
 
     def prepare(self, reactor, clock, homeserver):
@@ -58,6 +57,11 @@ class PaginationTestCase(HomeserverTestCase):
         self.third_tok = self.login("third", "test")
         self.helper.join(room=self.room_id, user=self.third_user_id, tok=self.third_tok)
 
+        # Store a token which is after all the room creation events.
+        self.from_token = self.get_success(
+            self.hs.get_event_sources().get_current_token_for_pagination(self.room_id)
+        )
+
         # An initial event with a relation from second user.
         res = self.helper.send_event(
             room_id=self.room_id,
@@ -66,7 +70,7 @@ class PaginationTestCase(HomeserverTestCase):
             tok=self.tok,
         )
         self.event_id_1 = res["event_id"]
-        self.helper.send_event(
+        res = self.helper.send_event(
             room_id=self.room_id,
             type="m.reaction",
             content={
@@ -78,6 +82,7 @@ class PaginationTestCase(HomeserverTestCase):
             },
             tok=self.second_tok,
         )
+        self.event_id_annotation = res["event_id"]
 
         # Another event with a relation from third user.
         res = self.helper.send_event(
@@ -87,7 +92,7 @@ class PaginationTestCase(HomeserverTestCase):
             tok=self.tok,
         )
         self.event_id_2 = res["event_id"]
-        self.helper.send_event(
+        res = self.helper.send_event(
             room_id=self.room_id,
             type="m.reaction",
             content={
@@ -98,68 +103,59 @@ class PaginationTestCase(HomeserverTestCase):
             },
             tok=self.third_tok,
         )
+        self.event_id_reference = res["event_id"]
 
         # An event with no relations.
-        self.helper.send_event(
+        res = self.helper.send_event(
             room_id=self.room_id,
             type=EventTypes.Message,
             content={"msgtype": "m.text", "body": "No relations"},
             tok=self.tok,
         )
+        self.event_id_none = res["event_id"]
 
-    def _filter_messages(self, filter: JsonDict) -> List[EventBase]:
+    def _filter_messages(self, filter: JsonDict) -> List[str]:
         """Make a request to /messages with a filter, returns the chunk of events."""
 
-        from_token = self.get_success(
-            self.hs.get_event_sources().get_current_token_for_pagination(self.room_id)
-        )
-
         events, next_key = self.get_success(
             self.hs.get_datastores().main.paginate_room_events(
                 room_id=self.room_id,
-                from_key=from_token.room_key,
+                from_key=self.from_token.room_key,
                 to_key=None,
-                direction="b",
+                direction="f",
                 limit=10,
                 event_filter=Filter(self.hs, filter),
             )
         )
 
-        return events
+        return [ev.event_id for ev in events]
 
     def test_filter_relation_senders(self):
         # Messages which second user reacted to.
         filter = {"related_by_senders": [self.second_user_id]}
         chunk = self._filter_messages(filter)
-        self.assertEqual(len(chunk), 1, chunk)
-        self.assertEqual(chunk[0].event_id, self.event_id_1)
+        self.assertEqual(chunk, [self.event_id_1])
 
         # Messages which third user reacted to.
         filter = {"related_by_senders": [self.third_user_id]}
         chunk = self._filter_messages(filter)
-        self.assertEqual(len(chunk), 1, chunk)
-        self.assertEqual(chunk[0].event_id, self.event_id_2)
+        self.assertEqual(chunk, [self.event_id_2])
 
         # Messages which either user reacted to.
         filter = {"related_by_senders": [self.second_user_id, self.third_user_id]}
         chunk = self._filter_messages(filter)
-        self.assertEqual(len(chunk), 2, chunk)
-        self.assertCountEqual(
-            [c.event_id for c in chunk], [self.event_id_1, self.event_id_2]
-        )
+        self.assertCountEqual(chunk, [self.event_id_1, self.event_id_2])
 
     def test_filter_relation_type(self):
         # Messages which have annotations.
         filter = {"related_by_rel_types": [RelationTypes.ANNOTATION]}
         chunk = self._filter_messages(filter)
-        self.assertEqual(len(chunk), 1, chunk)
-        self.assertEqual(chunk[0].event_id, self.event_id_1)
+        self.assertEqual(chunk, [self.event_id_1])
 
         # Messages which have references.
         filter = {"related_by_rel_types": [RelationTypes.REFERENCE]}
         chunk = self._filter_messages(filter)
-        self.assertEqual(len(chunk), 1, chunk)
-        self.assertEqual(chunk[0].event_id, self.event_id_2)
+        self.assertEqual(chunk, [self.event_id_2])
 
         # Messages which have either annotations or references.
         filter = {
@@ -169,10 +165,7 @@ class PaginationTestCase(HomeserverTestCase):
             ]
         }
         chunk = self._filter_messages(filter)
-        self.assertEqual(len(chunk), 2, chunk)
-        self.assertCountEqual(
-            [c.event_id for c in chunk], [self.event_id_1, self.event_id_2]
-        )
+        self.assertCountEqual(chunk, [self.event_id_1, self.event_id_2])
 
     def test_filter_relation_senders_and_type(self):
         # Messages which second user reacted to.
@@ -181,8 +174,7 @@ class PaginationTestCase(HomeserverTestCase):
             "related_by_rel_types": [RelationTypes.ANNOTATION],
         }
         chunk = self._filter_messages(filter)
-        self.assertEqual(len(chunk), 1, chunk)
-        self.assertEqual(chunk[0].event_id, self.event_id_1)
+        self.assertEqual(chunk, [self.event_id_1])
 
     def test_duplicate_relation(self):
         """An event should only be returned once if there are multiple relations to it."""
@@ -201,5 +193,65 @@ class PaginationTestCase(HomeserverTestCase):
 
         filter = {"related_by_senders": [self.second_user_id]}
         chunk = self._filter_messages(filter)
-        self.assertEqual(len(chunk), 1, chunk)
-        self.assertEqual(chunk[0].event_id, self.event_id_1)
+        self.assertEqual(chunk, [self.event_id_1])
+
+    def test_filter_rel_types(self) -> None:
+        # Messages which are annotations.
+        filter = {"org.matrix.msc3874.rel_types": [RelationTypes.ANNOTATION]}
+        chunk = self._filter_messages(filter)
+        self.assertEqual(chunk, [self.event_id_annotation])
+
+        # Messages which are references.
+        filter = {"org.matrix.msc3874.rel_types": [RelationTypes.REFERENCE]}
+        chunk = self._filter_messages(filter)
+        self.assertEqual(chunk, [self.event_id_reference])
+
+        # Messages which are either annotations or references.
+        filter = {
+            "org.matrix.msc3874.rel_types": [
+                RelationTypes.ANNOTATION,
+                RelationTypes.REFERENCE,
+            ]
+        }
+        chunk = self._filter_messages(filter)
+        self.assertCountEqual(
+            chunk,
+            [self.event_id_annotation, self.event_id_reference],
+        )
+
+    def test_filter_not_rel_types(self) -> None:
+        # Messages which are not annotations.
+        filter = {"org.matrix.msc3874.not_rel_types": [RelationTypes.ANNOTATION]}
+        chunk = self._filter_messages(filter)
+        self.assertEqual(
+            chunk,
+            [
+                self.event_id_1,
+                self.event_id_2,
+                self.event_id_reference,
+                self.event_id_none,
+            ],
+        )
+
+        # Messages which are not references.
+        filter = {"org.matrix.msc3874.not_rel_types": [RelationTypes.REFERENCE]}
+        chunk = self._filter_messages(filter)
+        self.assertEqual(
+            chunk,
+            [
+                self.event_id_1,
+                self.event_id_annotation,
+                self.event_id_2,
+                self.event_id_none,
+            ],
+        )
+
+        # Messages which are neither annotations or references.
+        filter = {
+            "org.matrix.msc3874.not_rel_types": [
+                RelationTypes.ANNOTATION,
+                RelationTypes.REFERENCE,
+            ]
+        }
+        chunk = self._filter_messages(filter)
+        self.assertEqual(chunk, [self.event_id_1, self.event_id_2, self.event_id_none])
author	Erik Johnston <erik@matrix.org>	2022-10-18 10:55:09 +0100
committer	Erik Johnston <erik@matrix.org>	2022-10-18 10:55:09 +0100
commit	1235316645b3167495cd936601d474e6f9c4e5a7 (patch)
tree	500957b38e5ae9b28570734afbc7ad72908e3efa
parent	Merge remote-tracking branch 'origin/release-v1.69' into matrix-org-hotfixes (diff)
parent	Allow poetry-core 1.3.2 (#14217) (diff)
download	synapse-1235316645b3167495cd936601d474e6f9c4e5a7.tar.xz